co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G66840

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010202: response to low fluence red light stimulus	0.00E+00
2	GO:0017012: protein-phytochromobilin linkage	0.00E+00
3	GO:0009902: chloroplast relocation	2.64E-06
4	GO:1902265: abscisic acid homeostasis	4.88E-05
5	GO:0009585: red, far-red light phototransduction	9.08E-05
6	GO:0010617: circadian regulation of calcium ion oscillation	1.20E-04
7	GO:0007154: cell communication	1.20E-04
8	GO:0019441: tryptophan catabolic process to kynurenine	1.20E-04
9	GO:0080183: response to photooxidative stress	1.20E-04
10	GO:0043100: pyrimidine nucleobase salvage	1.20E-04
11	GO:0031022: nuclear migration along microfilament	2.06E-04
12	GO:1901562: response to paraquat	2.06E-04
13	GO:0071492: cellular response to UV-A	2.06E-04
14	GO:0044375: regulation of peroxisome size	2.06E-04
15	GO:0009584: detection of visible light	3.01E-04
16	GO:0010148: transpiration	3.01E-04
17	GO:0009765: photosynthesis, light harvesting	4.04E-04
18	GO:0009649: entrainment of circadian clock	4.04E-04
19	GO:0009687: abscisic acid metabolic process	4.04E-04
20	GO:0070534: protein K63-linked ubiquitination	4.04E-04
21	GO:0071486: cellular response to high light intensity	4.04E-04
22	GO:0010029: regulation of seed germination	4.74E-04
23	GO:0010236: plastoquinone biosynthetic process	5.13E-04
24	GO:0006301: postreplication repair	6.29E-04
25	GO:0010304: PSII associated light-harvesting complex II catabolic process	6.29E-04
26	GO:0009637: response to blue light	7.29E-04
27	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	7.50E-04
28	GO:0017148: negative regulation of translation	7.50E-04
29	GO:0009903: chloroplast avoidance movement	7.50E-04
30	GO:0050790: regulation of catalytic activity	8.75E-04
31	GO:0010374: stomatal complex development	8.75E-04
32	GO:0010161: red light signaling pathway	8.75E-04
33	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.01E-03
34	GO:0030091: protein repair	1.01E-03
35	GO:0009231: riboflavin biosynthetic process	1.01E-03
36	GO:0016559: peroxisome fission	1.01E-03
37	GO:0015996: chlorophyll catabolic process	1.14E-03
38	GO:0051603: proteolysis involved in cellular protein catabolic process	1.27E-03
39	GO:0015780: nucleotide-sugar transport	1.28E-03
40	GO:0009638: phototropism	1.43E-03
41	GO:0006325: chromatin organization	1.59E-03
42	GO:0045036: protein targeting to chloroplast	1.59E-03
43	GO:0030048: actin filament-based movement	2.08E-03
44	GO:2000028: regulation of photoperiodism, flowering	2.08E-03
45	GO:0050826: response to freezing	2.08E-03
46	GO:0009718: anthocyanin-containing compound biosynthetic process	2.08E-03
47	GO:0009266: response to temperature stimulus	2.26E-03
48	GO:0007031: peroxisome organization	2.44E-03
49	GO:0051017: actin filament bundle assembly	2.81E-03
50	GO:0008299: isoprenoid biosynthetic process	3.01E-03
51	GO:0009693: ethylene biosynthetic process	3.61E-03
52	GO:0006012: galactose metabolic process	3.61E-03
53	GO:0042391: regulation of membrane potential	4.26E-03
54	GO:0006520: cellular amino acid metabolic process	4.48E-03
55	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	5.18E-03
56	GO:0009630: gravitropism	5.42E-03
57	GO:1901657: glycosyl compound metabolic process	5.66E-03
58	GO:0006464: cellular protein modification process	5.91E-03
59	GO:0006508: proteolysis	6.00E-03
60	GO:0046777: protein autophosphorylation	6.02E-03
61	GO:0015979: photosynthesis	6.43E-03
62	GO:0006468: protein phosphorylation	7.06E-03
63	GO:0010411: xyloglucan metabolic process	7.48E-03
64	GO:0018298: protein-chromophore linkage	8.03E-03
65	GO:0010218: response to far red light	8.60E-03
66	GO:0009867: jasmonic acid mediated signaling pathway	9.47E-03
67	GO:0005975: carbohydrate metabolic process	1.00E-02
68	GO:0009640: photomorphogenesis	1.13E-02
69	GO:0008643: carbohydrate transport	1.20E-02
70	GO:0031347: regulation of defense response	1.30E-02
71	GO:0006952: defense response	1.47E-02
72	GO:0009620: response to fungus	1.68E-02
73	GO:0009058: biosynthetic process	2.18E-02
74	GO:0007623: circadian rhythm	2.65E-02
75	GO:0006470: protein dephosphorylation	2.91E-02
76	GO:0009617: response to bacterium	3.00E-02
77	GO:0006970: response to osmotic stress	3.81E-02
78	GO:0009409: response to cold	4.05E-02
79	GO:0080167: response to karrikin	4.21E-02
80	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.31E-02
81	GO:0045454: cell redox homeostasis	4.78E-02
82	GO:0045892: negative regulation of transcription, DNA-templated	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
2	GO:0031517: red light photoreceptor activity	0.00E+00
3	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
4	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
5	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
6	GO:0008106: alcohol dehydrogenase (NADP+) activity	1.36E-06
7	GO:0042802: identical protein binding	3.36E-05
8	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	4.88E-05
9	GO:0010313: phytochrome binding	4.88E-05
10	GO:1990841: promoter-specific chromatin binding	4.88E-05
11	GO:0031516: far-red light photoreceptor activity	4.88E-05
12	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	4.88E-05
13	GO:0046480: galactolipid galactosyltransferase activity	4.88E-05
14	GO:0080079: cellobiose glucosidase activity	4.88E-05
15	GO:0004871: signal transducer activity	1.10E-04
16	GO:0050347: trans-octaprenyltranstransferase activity	1.20E-04
17	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	1.20E-04
18	GO:0004061: arylformamidase activity	1.20E-04
19	GO:0009883: red or far-red light photoreceptor activity	1.20E-04
20	GO:0043425: bHLH transcription factor binding	1.20E-04
21	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	1.20E-04
22	GO:0010277: chlorophyllide a oxygenase [overall] activity	2.06E-04
23	GO:0003935: GTP cyclohydrolase II activity	2.06E-04
24	GO:0008020: G-protein coupled photoreceptor activity	2.06E-04
25	GO:0048027: mRNA 5'-UTR binding	3.01E-04
26	GO:0004672: protein kinase activity	3.84E-04
27	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	6.29E-04
28	GO:0005261: cation channel activity	7.50E-04
29	GO:0005338: nucleotide-sugar transmembrane transporter activity	8.75E-04
30	GO:0004185: serine-type carboxypeptidase activity	9.27E-04
31	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	1.01E-03
32	GO:0004034: aldose 1-epimerase activity	1.01E-03
33	GO:0004673: protein histidine kinase activity	1.59E-03
34	GO:0008378: galactosyltransferase activity	1.91E-03
35	GO:0000155: phosphorelay sensor kinase activity	2.08E-03
36	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.26E-03
37	GO:0030553: cGMP binding	2.44E-03
38	GO:0030552: cAMP binding	2.44E-03
39	GO:0005216: ion channel activity	3.01E-03
40	GO:0004176: ATP-dependent peptidase activity	3.20E-03
41	GO:0030551: cyclic nucleotide binding	4.26E-03
42	GO:0005249: voltage-gated potassium channel activity	4.26E-03
43	GO:0016853: isomerase activity	4.71E-03
44	GO:0048038: quinone binding	5.18E-03
45	GO:0004518: nuclease activity	5.42E-03
46	GO:0004197: cysteine-type endopeptidase activity	5.42E-03
47	GO:0008483: transaminase activity	6.16E-03
48	GO:0008237: metallopeptidase activity	6.16E-03
49	GO:0016413: O-acetyltransferase activity	6.42E-03
50	GO:0016168: chlorophyll binding	6.94E-03
51	GO:0030247: polysaccharide binding	7.48E-03
52	GO:0008236: serine-type peptidase activity	7.75E-03
53	GO:0016491: oxidoreductase activity	8.35E-03
54	GO:0004222: metalloendopeptidase activity	8.60E-03
55	GO:0008422: beta-glucosidase activity	1.01E-02
56	GO:0051537: 2 iron, 2 sulfur cluster binding	1.20E-02
57	GO:0004674: protein serine/threonine kinase activity	1.23E-02
58	GO:0016298: lipase activity	1.43E-02
59	GO:0031625: ubiquitin protein ligase binding	1.50E-02
60	GO:0008234: cysteine-type peptidase activity	1.50E-02
61	GO:0022857: transmembrane transporter activity	1.72E-02
62	GO:0015035: protein disulfide oxidoreductase activity	1.83E-02
63	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.95E-02
64	GO:0030170: pyridoxal phosphate binding	2.27E-02
65	GO:0015297: antiporter activity	2.56E-02
66	GO:0016788: hydrolase activity, acting on ester bonds	3.66E-02
67	GO:0046872: metal ion binding	3.92E-02
68	GO:0061630: ubiquitin protein ligase activity	4.36E-02
69	GO:0052689: carboxylic ester hydrolase activity	4.52E-02
70	GO:0042803: protein homodimerization activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0005764: lysosome	8.25E-05
2	GO:0009526: plastid envelope	4.04E-04
3	GO:0031372: UBC13-MMS2 complex	4.04E-04
4	GO:0031359: integral component of chloroplast outer membrane	8.75E-04
5	GO:0005779: integral component of peroxisomal membrane	1.14E-03
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.28E-03
7	GO:0016604: nuclear body	1.43E-03
8	GO:0009536: plastid	1.49E-03
9	GO:0005834: heterotrimeric G-protein complex	1.54E-03
10	GO:0005884: actin filament	1.75E-03
11	GO:0009535: chloroplast thylakoid membrane	3.72E-03
12	GO:0009507: chloroplast	4.15E-03
13	GO:0009523: photosystem II	4.94E-03
14	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	4.99E-03
15	GO:0005778: peroxisomal membrane	6.16E-03
16	GO:0009707: chloroplast outer membrane	8.03E-03
17	GO:0005886: plasma membrane	9.43E-03
18	GO:0009941: chloroplast envelope	1.14E-02
19	GO:0005773: vacuole	1.37E-02
20	GO:0016607: nuclear speck	1.61E-02
21	GO:0005777: peroxisome	1.70E-02
22	GO:0005829: cytosol	1.71E-02
23	GO:0009706: chloroplast inner membrane	1.79E-02
24	GO:0010287: plastoglobule	2.02E-02
25	GO:0005783: endoplasmic reticulum	2.07E-02
26	GO:0005623: cell	2.14E-02
27	GO:0005615: extracellular space	2.87E-02
28	GO:0046658: anchored component of plasma membrane	3.23E-02
29	GO:0031969: chloroplast membrane	4.21E-02