co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G65820

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070207: protein homotrimerization	0.00E+00
2	GO:0042430: indole-containing compound metabolic process	0.00E+00
3	GO:0080184: response to phenylpropanoid	0.00E+00
4	GO:0030149: sphingolipid catabolic process	0.00E+00
5	GO:0023052: signaling	0.00E+00
6	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
7	GO:0042362: fat-soluble vitamin biosynthetic process	0.00E+00
8	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
9	GO:0006721: terpenoid metabolic process	0.00E+00
10	GO:0001881: receptor recycling	0.00E+00
11	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
12	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
13	GO:0006511: ubiquitin-dependent protein catabolic process	1.96E-12
14	GO:0051603: proteolysis involved in cellular protein catabolic process	3.79E-07
15	GO:0055114: oxidation-reduction process	1.72E-05
16	GO:0006099: tricarboxylic acid cycle	2.27E-05
17	GO:0043248: proteasome assembly	1.80E-04
18	GO:0010043: response to zinc ion	1.98E-04
19	GO:0015992: proton transport	2.13E-04
20	GO:0009853: photorespiration	2.31E-04
21	GO:0046686: response to cadmium ion	2.99E-04
22	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	3.16E-04
23	GO:0016487: farnesol metabolic process	3.60E-04
24	GO:0009852: auxin catabolic process	3.60E-04
25	GO:1901349: glucosinolate transport	3.60E-04
26	GO:0090449: phloem glucosinolate loading	3.60E-04
27	GO:0010265: SCF complex assembly	3.60E-04
28	GO:0042964: thioredoxin reduction	3.60E-04
29	GO:0015798: myo-inositol transport	3.60E-04
30	GO:0015991: ATP hydrolysis coupled proton transport	3.78E-04
31	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.97E-04
32	GO:0006102: isocitrate metabolic process	3.97E-04
33	GO:0015986: ATP synthesis coupled proton transport	4.60E-04
34	GO:0006452: translational frameshifting	7.83E-04
35	GO:0009915: phloem sucrose loading	7.83E-04
36	GO:0006101: citrate metabolic process	7.83E-04
37	GO:0015786: UDP-glucose transport	7.83E-04
38	GO:0019752: carboxylic acid metabolic process	7.83E-04
39	GO:0051788: response to misfolded protein	7.83E-04
40	GO:0080026: response to indolebutyric acid	7.83E-04
41	GO:0045905: positive regulation of translational termination	7.83E-04
42	GO:0045901: positive regulation of translational elongation	7.83E-04
43	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	7.83E-04
44	GO:0046939: nucleotide phosphorylation	7.83E-04
45	GO:0008333: endosome to lysosome transport	1.27E-03
46	GO:0045793: positive regulation of cell size	1.27E-03
47	GO:0015783: GDP-fucose transport	1.27E-03
48	GO:0034227: tRNA thio-modification	1.27E-03
49	GO:0006107: oxaloacetate metabolic process	1.83E-03
50	GO:0009647: skotomorphogenesis	1.83E-03
51	GO:0072334: UDP-galactose transmembrane transport	1.83E-03
52	GO:0009963: positive regulation of flavonoid biosynthetic process	1.83E-03
53	GO:0006168: adenine salvage	1.83E-03
54	GO:0071786: endoplasmic reticulum tubular network organization	1.83E-03
55	GO:0080024: indolebutyric acid metabolic process	1.83E-03
56	GO:0001676: long-chain fatty acid metabolic process	1.83E-03
57	GO:0032877: positive regulation of DNA endoreduplication	1.83E-03
58	GO:0046836: glycolipid transport	1.83E-03
59	GO:0006166: purine ribonucleoside salvage	1.83E-03
60	GO:0009735: response to cytokinin	1.85E-03
61	GO:0006487: protein N-linked glycosylation	1.85E-03
62	GO:0006631: fatty acid metabolic process	2.05E-03
63	GO:0061077: chaperone-mediated protein folding	2.25E-03
64	GO:0051781: positive regulation of cell division	2.45E-03
65	GO:0010363: regulation of plant-type hypersensitive response	2.45E-03
66	GO:0032366: intracellular sterol transport	2.45E-03
67	GO:0009651: response to salt stress	2.60E-03
68	GO:0009697: salicylic acid biosynthetic process	3.14E-03
69	GO:0036065: fucosylation	3.14E-03
70	GO:0005513: detection of calcium ion	3.14E-03
71	GO:0097428: protein maturation by iron-sulfur cluster transfer	3.14E-03
72	GO:0006097: glyoxylate cycle	3.14E-03
73	GO:1902183: regulation of shoot apical meristem development	3.14E-03
74	GO:0044209: AMP salvage	3.14E-03
75	GO:0002238: response to molecule of fungal origin	3.88E-03
76	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	3.88E-03
77	GO:0042254: ribosome biogenesis	4.41E-03
78	GO:0010193: response to ozone	4.55E-03
79	GO:1901001: negative regulation of response to salt stress	4.67E-03
80	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	4.67E-03
81	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	4.67E-03
82	GO:0010189: vitamin E biosynthetic process	4.67E-03
83	GO:0030163: protein catabolic process	5.18E-03
84	GO:0048528: post-embryonic root development	5.52E-03
85	GO:0006744: ubiquinone biosynthetic process	5.52E-03
86	GO:1900056: negative regulation of leaf senescence	5.52E-03
87	GO:0022904: respiratory electron transport chain	5.52E-03
88	GO:0010044: response to aluminum ion	5.52E-03
89	GO:0009642: response to light intensity	6.41E-03
90	GO:0009690: cytokinin metabolic process	6.41E-03
91	GO:0006506: GPI anchor biosynthetic process	6.41E-03
92	GO:0048658: anther wall tapetum development	6.41E-03
93	GO:0031540: regulation of anthocyanin biosynthetic process	6.41E-03
94	GO:0022900: electron transport chain	7.36E-03
95	GO:0019430: removal of superoxide radicals	7.36E-03
96	GO:0006950: response to stress	7.76E-03
97	GO:0045454: cell redox homeostasis	7.82E-03
98	GO:0042744: hydrogen peroxide catabolic process	8.20E-03
99	GO:0098656: anion transmembrane transport	8.35E-03
100	GO:0046685: response to arsenic-containing substance	8.35E-03
101	GO:0009821: alkaloid biosynthetic process	8.35E-03
102	GO:0009245: lipid A biosynthetic process	8.35E-03
103	GO:0080144: amino acid homeostasis	8.35E-03
104	GO:0006754: ATP biosynthetic process	8.35E-03
105	GO:0009060: aerobic respiration	8.35E-03
106	GO:0015780: nucleotide-sugar transport	8.35E-03
107	GO:0009817: defense response to fungus, incompatible interaction	8.60E-03
108	GO:0009832: plant-type cell wall biogenesis	9.04E-03
109	GO:0000103: sulfate assimilation	1.05E-02
110	GO:0006032: chitin catabolic process	1.05E-02
111	GO:0043069: negative regulation of programmed cell death	1.05E-02
112	GO:0072593: reactive oxygen species metabolic process	1.16E-02
113	GO:0000272: polysaccharide catabolic process	1.16E-02
114	GO:0008361: regulation of cell size	1.28E-02
115	GO:0006820: anion transport	1.28E-02
116	GO:0002213: defense response to insect	1.28E-02
117	GO:0016925: protein sumoylation	1.28E-02
118	GO:0009617: response to bacterium	1.31E-02
119	GO:0006807: nitrogen compound metabolic process	1.40E-02
120	GO:0006108: malate metabolic process	1.40E-02
121	GO:0006006: glucose metabolic process	1.40E-02
122	GO:0006094: gluconeogenesis	1.40E-02
123	GO:0009926: auxin polar transport	1.41E-02
124	GO:0007034: vacuolar transport	1.52E-02
125	GO:0010223: secondary shoot formation	1.52E-02
126	GO:0009266: response to temperature stimulus	1.52E-02
127	GO:0009934: regulation of meristem structural organization	1.52E-02
128	GO:0009969: xyloglucan biosynthetic process	1.65E-02
129	GO:0007030: Golgi organization	1.65E-02
130	GO:0009901: anther dehiscence	1.65E-02
131	GO:0090351: seedling development	1.65E-02
132	GO:0006855: drug transmembrane transport	1.65E-02
133	GO:0006636: unsaturated fatty acid biosynthetic process	1.78E-02
134	GO:0006486: protein glycosylation	1.91E-02
135	GO:0009116: nucleoside metabolic process	1.92E-02
136	GO:0006406: mRNA export from nucleus	1.92E-02
137	GO:2000377: regulation of reactive oxygen species metabolic process	1.92E-02
138	GO:0008299: isoprenoid biosynthetic process	2.06E-02
139	GO:0048511: rhythmic process	2.20E-02
140	GO:0010431: seed maturation	2.20E-02
141	GO:0006096: glycolytic process	2.26E-02
142	GO:0016226: iron-sulfur cluster assembly	2.35E-02
143	GO:0035428: hexose transmembrane transport	2.35E-02
144	GO:0019748: secondary metabolic process	2.35E-02
145	GO:0080167: response to karrikin	2.39E-02
146	GO:0016192: vesicle-mediated transport	2.55E-02
147	GO:0006979: response to oxidative stress	2.61E-02
148	GO:0010584: pollen exine formation	2.65E-02
149	GO:0019722: calcium-mediated signaling	2.65E-02
150	GO:0010089: xylem development	2.65E-02
151	GO:0016117: carotenoid biosynthetic process	2.81E-02
152	GO:0042147: retrograde transport, endosome to Golgi	2.81E-02
153	GO:0042631: cellular response to water deprivation	2.97E-02
154	GO:0080022: primary root development	2.97E-02
155	GO:0034220: ion transmembrane transport	2.97E-02
156	GO:0000413: protein peptidyl-prolyl isomerization	2.97E-02
157	GO:0010051: xylem and phloem pattern formation	2.97E-02
158	GO:0010118: stomatal movement	2.97E-02
159	GO:0006520: cellular amino acid metabolic process	3.13E-02
160	GO:0006662: glycerol ether metabolic process	3.13E-02
161	GO:0046323: glucose import	3.13E-02
162	GO:0006869: lipid transport	3.36E-02
163	GO:0006623: protein targeting to vacuole	3.47E-02
164	GO:0048825: cotyledon development	3.47E-02
165	GO:0080156: mitochondrial mRNA modification	3.64E-02
166	GO:0000302: response to reactive oxygen species	3.64E-02
167	GO:0010252: auxin homeostasis	4.17E-02
168	GO:0000910: cytokinesis	4.54E-02
169	GO:0009615: response to virus	4.72E-02
170	GO:0010228: vegetative to reproductive phase transition of meristem	4.89E-02
171	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.91E-02
172	GO:0009607: response to biotic stimulus	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
2	GO:0050152: omega-amidase activity	0.00E+00
3	GO:0010176: homogentisate phytyltransferase activity	0.00E+00
4	GO:0003796: lysozyme activity	0.00E+00
5	GO:0033961: cis-stilbene-oxide hydrolase activity	0.00E+00
6	GO:0047886: farnesol dehydrogenase activity	0.00E+00
7	GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity	0.00E+00
8	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
9	GO:0004298: threonine-type endopeptidase activity	5.25E-28
10	GO:0008233: peptidase activity	1.29E-15
11	GO:0004129: cytochrome-c oxidase activity	1.34E-06
12	GO:0008137: NADH dehydrogenase (ubiquinone) activity	4.70E-05
13	GO:0004576: oligosaccharyl transferase activity	8.00E-05
14	GO:0004659: prenyltransferase activity	8.00E-05
15	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.25E-04
16	GO:0050897: cobalt ion binding	1.98E-04
17	GO:0004656: procollagen-proline 4-dioxygenase activity	2.44E-04
18	GO:0004347: glucose-6-phosphate isomerase activity	3.60E-04
19	GO:0070401: NADP+ binding	3.60E-04
20	GO:0090448: glucosinolate:proton symporter activity	3.60E-04
21	GO:0016229: steroid dehydrogenase activity	3.60E-04
22	GO:0005507: copper ion binding	3.92E-04
23	GO:0004047: aminomethyltransferase activity	7.83E-04
24	GO:0003994: aconitate hydratase activity	7.83E-04
25	GO:0050347: trans-octaprenyltranstransferase activity	7.83E-04
26	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	7.83E-04
27	GO:0008805: carbon-monoxide oxygenase activity	7.83E-04
28	GO:0005366: myo-inositol:proton symporter activity	7.83E-04
29	GO:0008517: folic acid transporter activity	7.83E-04
30	GO:0046961: proton-transporting ATPase activity, rotational mechanism	9.22E-04
31	GO:0008794: arsenate reductase (glutaredoxin) activity	9.22E-04
32	GO:0004557: alpha-galactosidase activity	1.27E-03
33	GO:0005457: GDP-fucose transmembrane transporter activity	1.27E-03
34	GO:0052692: raffinose alpha-galactosidase activity	1.27E-03
35	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.65E-03
36	GO:0017089: glycolipid transporter activity	1.83E-03
37	GO:0019201: nucleotide kinase activity	1.83E-03
38	GO:0003999: adenine phosphoribosyltransferase activity	1.83E-03
39	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.83E-03
40	GO:0005460: UDP-glucose transmembrane transporter activity	1.83E-03
41	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.83E-03
42	GO:0005528: FK506 binding	1.85E-03
43	GO:0031418: L-ascorbic acid binding	1.85E-03
44	GO:0051539: 4 iron, 4 sulfur cluster binding	1.94E-03
45	GO:0051861: glycolipid binding	2.45E-03
46	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.45E-03
47	GO:0050302: indole-3-acetaldehyde oxidase activity	2.45E-03
48	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.45E-03
49	GO:0004301: epoxide hydrolase activity	2.45E-03
50	GO:0010011: auxin binding	2.45E-03
51	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.77E-03
52	GO:0005459: UDP-galactose transmembrane transporter activity	3.14E-03
53	GO:0008177: succinate dehydrogenase (ubiquinone) activity	3.14E-03
54	GO:0004040: amidase activity	3.14E-03
55	GO:0000104: succinate dehydrogenase activity	3.14E-03
56	GO:0031386: protein tag	3.14E-03
57	GO:0051538: 3 iron, 4 sulfur cluster binding	3.14E-03
58	GO:0009055: electron carrier activity	3.17E-03
59	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.68E-03
60	GO:0031177: phosphopantetheine binding	3.88E-03
61	GO:0004791: thioredoxin-disulfide reductase activity	3.96E-03
62	GO:0004601: peroxidase activity	4.29E-03
63	GO:0004017: adenylate kinase activity	4.67E-03
64	GO:0000035: acyl binding	4.67E-03
65	GO:0102391: decanoate--CoA ligase activity	4.67E-03
66	GO:0004602: glutathione peroxidase activity	4.67E-03
67	GO:0015035: protein disulfide oxidoreductase activity	5.41E-03
68	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	5.52E-03
69	GO:0016831: carboxy-lyase activity	5.52E-03
70	GO:0005338: nucleotide-sugar transmembrane transporter activity	5.52E-03
71	GO:0008121: ubiquinol-cytochrome-c reductase activity	5.52E-03
72	GO:0008320: protein transmembrane transporter activity	5.52E-03
73	GO:0004467: long-chain fatty acid-CoA ligase activity	5.52E-03
74	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	6.41E-03
75	GO:0052747: sinapyl alcohol dehydrogenase activity	6.41E-03
76	GO:0043022: ribosome binding	6.41E-03
77	GO:0004033: aldo-keto reductase (NADP) activity	6.41E-03
78	GO:0004869: cysteine-type endopeptidase inhibitor activity	6.41E-03
79	GO:0015288: porin activity	6.41E-03
80	GO:0015078: hydrogen ion transmembrane transporter activity	7.36E-03
81	GO:0008308: voltage-gated anion channel activity	7.36E-03
82	GO:0008417: fucosyltransferase activity	8.35E-03
83	GO:0000989: transcription factor activity, transcription factor binding	8.35E-03
84	GO:0045309: protein phosphorylated amino acid binding	9.38E-03
85	GO:0016844: strictosidine synthase activity	9.38E-03
86	GO:0004568: chitinase activity	1.05E-02
87	GO:0019904: protein domain specific binding	1.16E-02
88	GO:0008559: xenobiotic-transporting ATPase activity	1.16E-02
89	GO:0004161: dimethylallyltranstransferase activity	1.16E-02
90	GO:0003735: structural constituent of ribosome	1.28E-02
91	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.28E-02
92	GO:0004022: alcohol dehydrogenase (NAD) activity	1.40E-02
93	GO:0004089: carbonate dehydratase activity	1.40E-02
94	GO:0004175: endopeptidase activity	1.52E-02
95	GO:0008266: poly(U) RNA binding	1.52E-02
96	GO:0051287: NAD binding	1.71E-02
97	GO:0016788: hydrolase activity, acting on ester bonds	1.87E-02
98	GO:0016887: ATPase activity	2.08E-02
99	GO:0020037: heme binding	2.12E-02
100	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.33E-02
101	GO:0008514: organic anion transmembrane transporter activity	2.65E-02
102	GO:0047134: protein-disulfide reductase activity	2.81E-02
103	GO:0005355: glucose transmembrane transporter activity	3.30E-02
104	GO:0050662: coenzyme binding	3.30E-02
105	GO:0019843: rRNA binding	3.40E-02
106	GO:0004872: receptor activity	3.47E-02
107	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.99E-02
108	GO:0005351: sugar:proton symporter activity	4.57E-02
109	GO:0051213: dioxygenase activity	4.72E-02
110	GO:0015250: water channel activity	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	2.09E-28
2	GO:0005839: proteasome core complex	5.25E-28
3	GO:0005774: vacuolar membrane	5.53E-14
4	GO:0019773: proteasome core complex, alpha-subunit complex	6.78E-14
5	GO:0005747: mitochondrial respiratory chain complex I	5.83E-11
6	GO:0005773: vacuole	2.37E-10
7	GO:0005829: cytosol	3.08E-08
8	GO:0005783: endoplasmic reticulum	4.25E-07
9	GO:0005753: mitochondrial proton-transporting ATP synthase complex	4.35E-06
10	GO:0045271: respiratory chain complex I	8.79E-06
11	GO:0045273: respiratory chain complex II	1.24E-05
12	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	8.00E-05
13	GO:0005788: endoplasmic reticulum lumen	1.05E-04
14	GO:0008250: oligosaccharyltransferase complex	1.25E-04
15	GO:0016020: membrane	1.47E-04
16	GO:0070469: respiratory chain	1.86E-04
17	GO:0005789: endoplasmic reticulum membrane	2.82E-04
18	GO:0019774: proteasome core complex, beta-subunit complex	3.60E-04
19	GO:0009510: plasmodesmatal desmotubule	3.60E-04
20	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	3.97E-04
21	GO:0031966: mitochondrial membrane	5.02E-04
22	GO:0022626: cytosolic ribosome	5.61E-04
23	GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain	7.83E-04
24	GO:0045281: succinate dehydrogenase complex	7.83E-04
25	GO:0008541: proteasome regulatory particle, lid subcomplex	9.22E-04
26	GO:0005794: Golgi apparatus	9.60E-04
27	GO:0005751: mitochondrial respiratory chain complex IV	1.27E-03
28	GO:0046861: glyoxysomal membrane	1.27E-03
29	GO:0005750: mitochondrial respiratory chain complex III	1.34E-03
30	GO:0000325: plant-type vacuole	1.46E-03
31	GO:0022625: cytosolic large ribosomal subunit	1.54E-03
32	GO:0033180: proton-transporting V-type ATPase, V1 domain	1.83E-03
33	GO:0071782: endoplasmic reticulum tubular network	1.83E-03
34	GO:0005758: mitochondrial intermembrane space	1.85E-03
35	GO:0033179: proton-transporting V-type ATPase, V0 domain	2.45E-03
36	GO:0016471: vacuolar proton-transporting V-type ATPase complex	2.45E-03
37	GO:0005739: mitochondrion	2.77E-03
38	GO:0005746: mitochondrial respiratory chain	3.14E-03
39	GO:0030904: retromer complex	3.88E-03
40	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	3.88E-03
41	GO:0005771: multivesicular body	3.88E-03
42	GO:0009536: plastid	4.54E-03
43	GO:0005886: plasma membrane	4.69E-03
44	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	5.52E-03
45	GO:0032580: Golgi cisterna membrane	5.52E-03
46	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	6.41E-03
47	GO:0009514: glyoxysome	7.36E-03
48	GO:0046930: pore complex	7.36E-03
49	GO:0031090: organelle membrane	8.35E-03
50	GO:0005759: mitochondrial matrix	9.29E-03
51	GO:0005840: ribosome	9.70E-03
52	GO:0015934: large ribosomal subunit	9.96E-03
53	GO:0005737: cytoplasm	9.97E-03
54	GO:0005740: mitochondrial envelope	1.05E-02
55	GO:0016021: integral component of membrane	1.30E-02
56	GO:0005741: mitochondrial outer membrane	2.20E-02
57	GO:0005618: cell wall	2.33E-02
58	GO:0005777: peroxisome	3.11E-02
59	GO:0009507: chloroplast	3.44E-02
60	GO:0009504: cell plate	3.47E-02
61	GO:0009506: plasmodesma	4.68E-02