Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G65610

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042430: indole-containing compound metabolic process0.00E+00
2GO:0030149: sphingolipid catabolic process0.00E+00
3GO:0019458: methionine catabolic process via 2-oxobutanoate0.00E+00
4GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
5GO:0033587: shikimate biosynthetic process0.00E+00
6GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
7GO:0016102: diterpenoid biosynthetic process0.00E+00
8GO:1900409: positive regulation of cellular response to oxidative stress0.00E+00
9GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
10GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
11GO:0007160: cell-matrix adhesion0.00E+00
12GO:0009264: deoxyribonucleotide catabolic process0.00E+00
13GO:0055114: oxidation-reduction process1.27E-07
14GO:0006099: tricarboxylic acid cycle6.17E-06
15GO:0006979: response to oxidative stress8.68E-06
16GO:0042744: hydrogen peroxide catabolic process1.01E-05
17GO:0009651: response to salt stress1.04E-05
18GO:0001676: long-chain fatty acid metabolic process2.38E-05
19GO:0006869: lipid transport2.54E-05
20GO:0046686: response to cadmium ion4.81E-05
21GO:0006564: L-serine biosynthetic process6.89E-05
22GO:0006097: glyoxylate cycle6.89E-05
23GO:0009058: biosynthetic process9.14E-05
24GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c1.82E-04
25GO:0006102: isocitrate metabolic process2.32E-04
26GO:0019343: cysteine biosynthetic process via cystathionine2.51E-04
27GO:1901430: positive regulation of syringal lignin biosynthetic process2.51E-04
28GO:0071266: 'de novo' L-methionine biosynthetic process2.51E-04
29GO:1901349: glucosinolate transport2.51E-04
30GO:0090449: phloem glucosinolate loading2.51E-04
31GO:0019346: transsulfuration2.51E-04
32GO:0015812: gamma-aminobutyric acid transport2.51E-04
33GO:0042964: thioredoxin reduction2.51E-04
34GO:0032491: detection of molecule of fungal origin2.51E-04
35GO:0019605: butyrate metabolic process2.51E-04
36GO:0010201: response to continuous far red light stimulus by the high-irradiance response system2.51E-04
37GO:0006106: fumarate metabolic process2.51E-04
38GO:0006083: acetate metabolic process2.51E-04
39GO:1990542: mitochondrial transmembrane transport2.51E-04
40GO:0009820: alkaloid metabolic process2.51E-04
41GO:0010365: positive regulation of ethylene biosynthetic process2.51E-04
42GO:0006101: citrate metabolic process5.53E-04
43GO:0002240: response to molecule of oomycetes origin5.53E-04
44GO:0015786: UDP-glucose transport5.53E-04
45GO:0019752: carboxylic acid metabolic process5.53E-04
46GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine5.53E-04
47GO:0071497: cellular response to freezing5.53E-04
48GO:0045905: positive regulation of translational termination5.53E-04
49GO:0043132: NAD transport5.53E-04
50GO:1990069: stomatal opening5.53E-04
51GO:0045901: positive regulation of translational elongation5.53E-04
52GO:0006123: mitochondrial electron transport, cytochrome c to oxygen5.53E-04
53GO:0006452: translational frameshifting5.53E-04
54GO:0006807: nitrogen compound metabolic process7.18E-04
55GO:0002237: response to molecule of bacterial origin8.08E-04
56GO:0006413: translational initiation8.83E-04
57GO:0006954: inflammatory response8.99E-04
58GO:0008652: cellular amino acid biosynthetic process8.99E-04
59GO:0046417: chorismate metabolic process8.99E-04
60GO:0044375: regulation of peroxisome size8.99E-04
61GO:0015783: GDP-fucose transport8.99E-04
62GO:0009753: response to jasmonic acid1.23E-03
63GO:0072334: UDP-galactose transmembrane transport1.28E-03
64GO:0010971: positive regulation of G2/M transition of mitotic cell cycle1.28E-03
65GO:0015858: nucleoside transport1.28E-03
66GO:0051289: protein homotetramerization1.28E-03
67GO:0046836: glycolipid transport1.28E-03
68GO:0009413: response to flooding1.28E-03
69GO:0009636: response to toxic substance1.34E-03
70GO:0015992: proton transport1.34E-03
71GO:0048511: rhythmic process1.34E-03
72GO:0032968: positive regulation of transcription elongation from RNA polymerase II promoter1.71E-03
73GO:0051781: positive regulation of cell division1.71E-03
74GO:0051365: cellular response to potassium ion starvation1.71E-03
75GO:0042631: cellular response to water deprivation2.02E-03
76GO:0006520: cellular amino acid metabolic process2.18E-03
77GO:0000304: response to singlet oxygen2.19E-03
78GO:0097428: protein maturation by iron-sulfur cluster transfer2.19E-03
79GO:1902183: regulation of shoot apical meristem development2.19E-03
80GO:0010193: response to ozone2.68E-03
81GO:0009228: thiamine biosynthetic process2.70E-03
82GO:0002238: response to molecule of fungal origin2.70E-03
83GO:0044550: secondary metabolite biosynthetic process2.99E-03
84GO:0009611: response to wounding3.11E-03
85GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.24E-03
86GO:0030643: cellular phosphate ion homeostasis3.24E-03
87GO:0010019: chloroplast-nucleus signaling pathway3.24E-03
88GO:0009648: photoperiodism3.24E-03
89GO:1900057: positive regulation of leaf senescence3.82E-03
90GO:0050829: defense response to Gram-negative bacterium3.82E-03
91GO:0009610: response to symbiotic fungus3.82E-03
92GO:0080027: response to herbivore3.82E-03
93GO:0098869: cellular oxidant detoxification3.82E-03
94GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.44E-03
95GO:0009642: response to light intensity4.44E-03
96GO:0009850: auxin metabolic process4.44E-03
97GO:0009737: response to abscisic acid4.66E-03
98GO:0040008: regulation of growth5.00E-03
99GO:0019430: removal of superoxide radicals5.08E-03
100GO:0007186: G-protein coupled receptor signaling pathway5.08E-03
101GO:0006367: transcription initiation from RNA polymerase II promoter5.08E-03
102GO:0010497: plasmodesmata-mediated intercellular transport5.08E-03
103GO:0010204: defense response signaling pathway, resistance gene-independent5.08E-03
104GO:0006972: hyperosmotic response5.08E-03
105GO:0006098: pentose-phosphate shunt5.75E-03
106GO:0010112: regulation of systemic acquired resistance5.75E-03
107GO:0006754: ATP biosynthetic process5.75E-03
108GO:0009060: aerobic respiration5.75E-03
109GO:0015780: nucleotide-sugar transport5.75E-03
110GO:0046685: response to arsenic-containing substance5.75E-03
111GO:0009051: pentose-phosphate shunt, oxidative branch5.75E-03
112GO:2000280: regulation of root development6.46E-03
113GO:0048354: mucilage biosynthetic process involved in seed coat development6.46E-03
114GO:0009617: response to bacterium6.64E-03
115GO:0009970: cellular response to sulfate starvation7.20E-03
116GO:0006032: chitin catabolic process7.20E-03
117GO:0010192: mucilage biosynthetic process7.20E-03
118GO:0006631: fatty acid metabolic process7.59E-03
119GO:0009682: induced systemic resistance7.96E-03
120GO:0072593: reactive oxygen species metabolic process7.96E-03
121GO:0009073: aromatic amino acid family biosynthetic process7.96E-03
122GO:0000272: polysaccharide catabolic process7.96E-03
123GO:0016485: protein processing7.96E-03
124GO:0006820: anion transport8.75E-03
125GO:0006108: malate metabolic process9.57E-03
126GO:0006006: glucose metabolic process9.57E-03
127GO:0009414: response to water deprivation9.85E-03
128GO:0006508: proteolysis1.02E-02
129GO:0009809: lignin biosynthetic process1.11E-02
130GO:0042343: indole glucosinolate metabolic process1.13E-02
131GO:0090351: seedling development1.13E-02
132GO:0006857: oligopeptide transport1.19E-02
133GO:0000162: tryptophan biosynthetic process1.22E-02
134GO:0006874: cellular calcium ion homeostasis1.41E-02
135GO:0009620: response to fungus1.45E-02
136GO:0098542: defense response to other organism1.50E-02
137GO:0016226: iron-sulfur cluster assembly1.60E-02
138GO:0071456: cellular response to hypoxia1.60E-02
139GO:0009409: response to cold1.73E-02
140GO:0006817: phosphate ion transport1.81E-02
141GO:0009561: megagametogenesis1.81E-02
142GO:0010089: xylem development1.81E-02
143GO:0010584: pollen exine formation1.81E-02
144GO:0008284: positive regulation of cell proliferation1.92E-02
145GO:0009751: response to salicylic acid1.96E-02
146GO:0010118: stomatal movement2.02E-02
147GO:0015991: ATP hydrolysis coupled proton transport2.02E-02
148GO:0010197: polar nucleus fusion2.14E-02
149GO:0048868: pollen tube development2.14E-02
150GO:0009749: response to glucose2.36E-02
151GO:0000302: response to reactive oxygen species2.48E-02
152GO:0050832: defense response to fungus2.53E-02
153GO:0030163: protein catabolic process2.72E-02
154GO:0010150: leaf senescence2.75E-02
155GO:0019760: glucosinolate metabolic process2.85E-02
156GO:0010029: regulation of seed germination3.36E-02
157GO:0010411: xyloglucan metabolic process3.62E-02
158GO:0009735: response to cytokinin3.65E-02
159GO:0016311: dephosphorylation3.76E-02
160GO:0016049: cell growth3.76E-02
161GO:0009817: defense response to fungus, incompatible interaction3.90E-02
162GO:0009813: flavonoid biosynthetic process4.04E-02
163GO:0009407: toxin catabolic process4.18E-02
164GO:0006811: ion transport4.18E-02
165GO:0010119: regulation of stomatal movement4.32E-02
166GO:0009853: photorespiration4.61E-02
167GO:0009723: response to ethylene4.89E-02
RankGO TermAdjusted P value
1GO:0070401: NADP+ binding0.00E+00
2GO:0010211: IAA-Leu conjugate hydrolase activity0.00E+00
3GO:0080013: (E,E)-geranyllinalool synthase activity0.00E+00
4GO:0010210: IAA-Phe conjugate hydrolase activity0.00E+00
5GO:0044610: FMN transmembrane transporter activity0.00E+00
6GO:0003796: lysozyme activity0.00E+00
7GO:0016229: steroid dehydrogenase activity0.00E+00
8GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
9GO:0018826: methionine gamma-lyase activity0.00E+00
10GO:0008117: sphinganine-1-phosphate aldolase activity0.00E+00
11GO:0004617: phosphoglycerate dehydrogenase activity2.91E-06
12GO:0004033: aldo-keto reductase (NADP) activity5.04E-06
13GO:0004601: peroxidase activity5.46E-06
14GO:0020037: heme binding9.22E-06
15GO:0008289: lipid binding9.15E-05
16GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity1.01E-04
17GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity1.01E-04
18GO:0102391: decanoate--CoA ligase activity1.39E-04
19GO:0004467: long-chain fatty acid-CoA ligase activity1.82E-04
20GO:0003743: translation initiation factor activity2.19E-04
21GO:0047760: butyrate-CoA ligase activity2.51E-04
22GO:0004048: anthranilate phosphoribosyltransferase activity2.51E-04
23GO:0015185: gamma-aminobutyric acid transmembrane transporter activity2.51E-04
24GO:0015230: FAD transmembrane transporter activity2.51E-04
25GO:0090448: glucosinolate:proton symporter activity2.51E-04
26GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity2.51E-04
27GO:0004333: fumarate hydratase activity2.51E-04
28GO:0004123: cystathionine gamma-lyase activity2.51E-04
29GO:0003987: acetate-CoA ligase activity2.51E-04
30GO:0010013: N-1-naphthylphthalamic acid binding2.51E-04
31GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity2.51E-04
32GO:0047517: 1,4-beta-D-xylan synthase activity5.53E-04
33GO:0004106: chorismate mutase activity5.53E-04
34GO:0019172: glyoxalase III activity5.53E-04
35GO:0008517: folic acid transporter activity5.53E-04
36GO:0015228: coenzyme A transmembrane transporter activity5.53E-04
37GO:0004618: phosphoglycerate kinase activity5.53E-04
38GO:0004047: aminomethyltransferase activity5.53E-04
39GO:0003994: aconitate hydratase activity5.53E-04
40GO:0051724: NAD transporter activity5.53E-04
41GO:0030170: pyridoxal phosphate binding7.07E-04
42GO:0003962: cystathionine gamma-synthase activity8.99E-04
43GO:0008253: 5'-nucleotidase activity8.99E-04
44GO:0004148: dihydrolipoyl dehydrogenase activity8.99E-04
45GO:0005457: GDP-fucose transmembrane transporter activity8.99E-04
46GO:0019201: nucleotide kinase activity1.28E-03
47GO:0004108: citrate (Si)-synthase activity1.28E-03
48GO:0004449: isocitrate dehydrogenase (NAD+) activity1.28E-03
49GO:0005460: UDP-glucose transmembrane transporter activity1.28E-03
50GO:0008106: alcohol dehydrogenase (NADP+) activity1.28E-03
51GO:0017077: oxidative phosphorylation uncoupler activity1.28E-03
52GO:0001872: (1->3)-beta-D-glucan binding1.28E-03
53GO:0017089: glycolipid transporter activity1.28E-03
54GO:0051287: NAD binding1.48E-03
55GO:0005507: copper ion binding1.53E-03
56GO:0008022: protein C-terminus binding1.71E-03
57GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances1.71E-03
58GO:0004930: G-protein coupled receptor activity1.71E-03
59GO:0015368: calcium:cation antiporter activity1.71E-03
60GO:0004345: glucose-6-phosphate dehydrogenase activity1.71E-03
61GO:0051861: glycolipid binding1.71E-03
62GO:0015369: calcium:proton antiporter activity1.71E-03
63GO:0005199: structural constituent of cell wall2.18E-03
64GO:0005459: UDP-galactose transmembrane transporter activity2.19E-03
65GO:0080122: AMP transmembrane transporter activity2.19E-03
66GO:0016208: AMP binding2.70E-03
67GO:0016688: L-ascorbate peroxidase activity2.70E-03
68GO:0008200: ion channel inhibitor activity2.70E-03
69GO:0004017: adenylate kinase activity3.24E-03
70GO:0005347: ATP transmembrane transporter activity3.24E-03
71GO:0004656: procollagen-proline 4-dioxygenase activity3.24E-03
72GO:0015217: ADP transmembrane transporter activity3.24E-03
73GO:0016597: amino acid binding3.65E-03
74GO:0016831: carboxy-lyase activity3.82E-03
75GO:0005338: nucleotide-sugar transmembrane transporter activity3.82E-03
76GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen3.90E-03
77GO:0043022: ribosome binding4.44E-03
78GO:0015491: cation:cation antiporter activity4.44E-03
79GO:0015288: porin activity4.44E-03
80GO:0008308: voltage-gated anion channel activity5.08E-03
81GO:0008135: translation factor activity, RNA binding5.08E-03
82GO:0004222: metalloendopeptidase activity5.56E-03
83GO:0071949: FAD binding5.75E-03
84GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism5.75E-03
85GO:0030145: manganese ion binding5.83E-03
86GO:0016844: strictosidine synthase activity6.46E-03
87GO:0004568: chitinase activity7.20E-03
88GO:0004177: aminopeptidase activity7.96E-03
89GO:0008559: xenobiotic-transporting ATPase activity7.96E-03
90GO:0015198: oligopeptide transporter activity8.75E-03
91GO:0000287: magnesium ion binding9.03E-03
92GO:0005506: iron ion binding9.99E-03
93GO:0008083: growth factor activity1.04E-02
94GO:0004970: ionotropic glutamate receptor activity1.13E-02
95GO:0005217: intracellular ligand-gated ion channel activity1.13E-02
96GO:0004190: aspartic-type endopeptidase activity1.13E-02
97GO:0004867: serine-type endopeptidase inhibitor activity1.13E-02
98GO:0003824: catalytic activity1.21E-02
99GO:0008134: transcription factor binding1.31E-02
100GO:0031418: L-ascorbic acid binding1.31E-02
101GO:0045735: nutrient reservoir activity1.32E-02
102GO:0046872: metal ion binding1.41E-02
103GO:0004298: threonine-type endopeptidase activity1.50E-02
104GO:0010333: terpene synthase activity1.50E-02
105GO:0008514: organic anion transmembrane transporter activity1.81E-02
106GO:0019825: oxygen binding1.94E-02
107GO:0004252: serine-type endopeptidase activity2.21E-02
108GO:0004791: thioredoxin-disulfide reductase activity2.25E-02
109GO:0016762: xyloglucan:xyloglucosyl transferase activity2.48E-02
110GO:0016791: phosphatase activity2.85E-02
111GO:0008237: metallopeptidase activity2.97E-02
112GO:0051213: dioxygenase activity3.23E-02
113GO:0030247: polysaccharide binding3.62E-02
114GO:0016798: hydrolase activity, acting on glycosyl bonds3.62E-02
115GO:0050897: cobalt ion binding4.32E-02
116GO:0016788: hydrolase activity, acting on ester bonds4.32E-02
117GO:0003746: translation elongation factor activity4.61E-02
118GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.61E-02
119GO:0003993: acid phosphatase activity4.76E-02
120GO:0016491: oxidoreductase activity4.83E-02
121GO:0008422: beta-glucosidase activity4.90E-02
122GO:0004712: protein serine/threonine/tyrosine kinase activity4.90E-02
RankGO TermAdjusted P value
1GO:0008305: integrin complex0.00E+00
2GO:0005774: vacuolar membrane7.71E-09
3GO:0005618: cell wall8.53E-07
4GO:0046861: glyoxysomal membrane1.05E-05
5GO:0005576: extracellular region7.05E-05
6GO:0005829: cytosol8.44E-05
7GO:0005759: mitochondrial matrix1.32E-04
8GO:0009506: plasmodesma1.46E-04
9GO:0005777: peroxisome2.45E-04
10GO:0045252: oxoglutarate dehydrogenase complex2.51E-04
11GO:0045239: tricarboxylic acid cycle enzyme complex2.51E-04
12GO:0009514: glyoxysome2.86E-04
13GO:0005750: mitochondrial respiratory chain complex III8.08E-04
14GO:0009530: primary cell wall8.99E-04
15GO:0005758: mitochondrial intermembrane space1.11E-03
16GO:0005741: mitochondrial outer membrane1.34E-03
17GO:0009536: plastid1.40E-03
18GO:0016471: vacuolar proton-transporting V-type ATPase complex1.71E-03
19GO:0005794: Golgi apparatus2.63E-03
20GO:0005851: eukaryotic translation initiation factor 2B complex2.70E-03
21GO:0009986: cell surface3.82E-03
22GO:0005783: endoplasmic reticulum4.36E-03
23GO:0009707: chloroplast outer membrane5.04E-03
24GO:0005779: integral component of peroxisomal membrane5.08E-03
25GO:0046930: pore complex5.08E-03
26GO:0048046: apoplast5.54E-03
27GO:0000325: plant-type vacuole5.83E-03
28GO:0031225: anchored component of membrane6.53E-03
29GO:0000502: proteasome complex1.11E-02
30GO:0005886: plasma membrane1.12E-02
31GO:0070469: respiratory chain1.41E-02
32GO:0016020: membrane1.47E-02
33GO:0005839: proteasome core complex1.50E-02
34GO:0005743: mitochondrial inner membrane1.82E-02
35GO:0009570: chloroplast stroma2.15E-02
36GO:0071944: cell periphery2.72E-02
37GO:0005778: peroxisomal membrane2.97E-02
38GO:0005615: extracellular space3.08E-02
39GO:0005773: vacuole3.19E-02
40GO:0046658: anchored component of plasma membrane3.64E-02
41GO:0009505: plant-type cell wall4.50E-02
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Gene type



Gene DE type