co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G64970

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090470: shoot organ boundary specification	0.00E+00
2	GO:0010336: gibberellic acid homeostasis	0.00E+00
3	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
4	GO:0046294: formaldehyde catabolic process	0.00E+00
5	GO:0016093: polyprenol metabolic process	0.00E+00
6	GO:0010477: response to sulfur dioxide	0.00E+00
7	GO:0009661: chromoplast organization	0.00E+00
8	GO:0071244: cellular response to carbon dioxide	0.00E+00
9	GO:0033317: pantothenate biosynthetic process from valine	0.00E+00
10	GO:0018293: protein-FAD linkage	0.00E+00
11	GO:0034553: mitochondrial respiratory chain complex II assembly	0.00E+00
12	GO:0032780: negative regulation of ATPase activity	0.00E+00
13	GO:0055114: oxidation-reduction process	4.01E-11
14	GO:0071483: cellular response to blue light	5.61E-05
15	GO:0006508: proteolysis	8.45E-05
16	GO:0006555: methionine metabolic process	1.29E-04
17	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.29E-04
18	GO:0019509: L-methionine salvage from methylthioadenosine	1.76E-04
19	GO:0050790: regulation of catalytic activity	2.30E-04
20	GO:0010036: response to boron-containing substance	2.92E-04
21	GO:0046467: membrane lipid biosynthetic process	2.92E-04
22	GO:0071461: cellular response to redox state	2.92E-04
23	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	2.92E-04
24	GO:0006835: dicarboxylic acid transport	2.92E-04
25	GO:0051603: proteolysis involved in cellular protein catabolic process	3.65E-04
26	GO:0051453: regulation of intracellular pH	5.10E-04
27	GO:2000030: regulation of response to red or far red light	6.40E-04
28	GO:0080005: photosystem stoichiometry adjustment	6.40E-04
29	GO:0006898: receptor-mediated endocytosis	6.40E-04
30	GO:0007154: cell communication	6.40E-04
31	GO:1904143: positive regulation of carotenoid biosynthetic process	6.40E-04
32	GO:0080183: response to photooxidative stress	6.40E-04
33	GO:0043100: pyrimidine nucleobase salvage	6.40E-04
34	GO:0042754: negative regulation of circadian rhythm	6.40E-04
35	GO:0010343: singlet oxygen-mediated programmed cell death	6.40E-04
36	GO:0019419: sulfate reduction	1.04E-03
37	GO:1901562: response to paraquat	1.04E-03
38	GO:0015940: pantothenate biosynthetic process	1.04E-03
39	GO:0071836: nectar secretion	1.04E-03
40	GO:0044375: regulation of peroxisome size	1.04E-03
41	GO:0045454: cell redox homeostasis	1.12E-03
42	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.48E-03
43	GO:0010148: transpiration	1.48E-03
44	GO:2001141: regulation of RNA biosynthetic process	1.48E-03
45	GO:0046713: borate transport	1.48E-03
46	GO:0010371: regulation of gibberellin biosynthetic process	1.48E-03
47	GO:0015994: chlorophyll metabolic process	1.99E-03
48	GO:0071585: detoxification of cadmium ion	1.99E-03
49	GO:0015846: polyamine transport	1.99E-03
50	GO:0009902: chloroplast relocation	1.99E-03
51	GO:0042938: dipeptide transport	1.99E-03
52	GO:0010021: amylopectin biosynthetic process	1.99E-03
53	GO:0006646: phosphatidylethanolamine biosynthetic process	1.99E-03
54	GO:0070534: protein K63-linked ubiquitination	1.99E-03
55	GO:0015743: malate transport	1.99E-03
56	GO:0000304: response to singlet oxygen	2.54E-03
57	GO:0016120: carotene biosynthetic process	2.54E-03
58	GO:0009904: chloroplast accumulation movement	2.54E-03
59	GO:0010236: plastoquinone biosynthetic process	2.54E-03
60	GO:0009658: chloroplast organization	2.66E-03
61	GO:0006520: cellular amino acid metabolic process	2.71E-03
62	GO:1902456: regulation of stomatal opening	3.14E-03
63	GO:0010190: cytochrome b6f complex assembly	3.14E-03
64	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	3.14E-03
65	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	3.14E-03
66	GO:0006301: postreplication repair	3.14E-03
67	GO:1901001: negative regulation of response to salt stress	3.77E-03
68	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	3.77E-03
69	GO:0009903: chloroplast avoidance movement	3.77E-03
70	GO:0009648: photoperiodism	3.77E-03
71	GO:0070370: cellular heat acclimation	4.45E-03
72	GO:0010038: response to metal ion	4.45E-03
73	GO:0006955: immune response	4.45E-03
74	GO:0009058: biosynthetic process	4.99E-03
75	GO:0030091: protein repair	5.17E-03
76	GO:0050821: protein stabilization	5.17E-03
77	GO:0006102: isocitrate metabolic process	5.17E-03
78	GO:0016559: peroxisome fission	5.17E-03
79	GO:0042128: nitrate assimilation	5.38E-03
80	GO:0071482: cellular response to light stimulus	5.92E-03
81	GO:0015996: chlorophyll catabolic process	5.92E-03
82	GO:0048574: long-day photoperiodism, flowering	5.92E-03
83	GO:0010100: negative regulation of photomorphogenesis	5.92E-03
84	GO:0009821: alkaloid biosynthetic process	6.71E-03
85	GO:0010206: photosystem II repair	6.71E-03
86	GO:0034765: regulation of ion transmembrane transport	6.71E-03
87	GO:0007568: aging	7.28E-03
88	GO:0010205: photoinhibition	7.54E-03
89	GO:0009098: leucine biosynthetic process	7.54E-03
90	GO:0034599: cellular response to oxidative stress	8.35E-03
91	GO:0006099: tricarboxylic acid cycle	8.35E-03
92	GO:0009970: cellular response to sulfate starvation	8.40E-03
93	GO:0006995: cellular response to nitrogen starvation	8.40E-03
94	GO:0000103: sulfate assimilation	8.40E-03
95	GO:0045036: protein targeting to chloroplast	8.40E-03
96	GO:0009773: photosynthetic electron transport in photosystem I	9.30E-03
97	GO:0008285: negative regulation of cell proliferation	9.30E-03
98	GO:0006879: cellular iron ion homeostasis	9.30E-03
99	GO:0006352: DNA-templated transcription, initiation	9.30E-03
100	GO:0000272: polysaccharide catabolic process	9.30E-03
101	GO:0016485: protein processing	9.30E-03
102	GO:0006790: sulfur compound metabolic process	1.02E-02
103	GO:0015706: nitrate transport	1.02E-02
104	GO:0009640: photomorphogenesis	1.03E-02
105	GO:0009785: blue light signaling pathway	1.12E-02
106	GO:0009767: photosynthetic electron transport chain	1.12E-02
107	GO:0005986: sucrose biosynthetic process	1.12E-02
108	GO:0046686: response to cadmium ion	1.14E-02
109	GO:0010207: photosystem II assembly	1.22E-02
110	GO:0007015: actin filament organization	1.22E-02
111	GO:0007031: peroxisome organization	1.32E-02
112	GO:0006071: glycerol metabolic process	1.43E-02
113	GO:0051017: actin filament bundle assembly	1.54E-02
114	GO:0009909: regulation of flower development	1.54E-02
115	GO:0006487: protein N-linked glycosylation	1.54E-02
116	GO:0019344: cysteine biosynthetic process	1.54E-02
117	GO:0008299: isoprenoid biosynthetic process	1.65E-02
118	GO:0010073: meristem maintenance	1.65E-02
119	GO:0061077: chaperone-mediated protein folding	1.76E-02
120	GO:0031408: oxylipin biosynthetic process	1.76E-02
121	GO:0044550: secondary metabolite biosynthetic process	1.79E-02
122	GO:0010017: red or far-red light signaling pathway	1.88E-02
123	GO:0016226: iron-sulfur cluster assembly	1.88E-02
124	GO:0009693: ethylene biosynthetic process	2.00E-02
125	GO:0010227: floral organ abscission	2.00E-02
126	GO:0006012: galactose metabolic process	2.00E-02
127	GO:0006817: phosphate ion transport	2.12E-02
128	GO:0042391: regulation of membrane potential	2.37E-02
129	GO:0080022: primary root development	2.37E-02
130	GO:0006662: glycerol ether metabolic process	2.50E-02
131	GO:0010182: sugar mediated signaling pathway	2.50E-02
132	GO:0009741: response to brassinosteroid	2.50E-02
133	GO:0006814: sodium ion transport	2.64E-02
134	GO:0042752: regulation of circadian rhythm	2.64E-02
135	GO:0019252: starch biosynthetic process	2.77E-02
136	GO:0008654: phospholipid biosynthetic process	2.77E-02
137	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.91E-02
138	GO:0019761: glucosinolate biosynthetic process	3.05E-02
139	GO:0030163: protein catabolic process	3.19E-02
140	GO:0006464: cellular protein modification process	3.34E-02
141	GO:0007623: circadian rhythm	3.43E-02
142	GO:0071805: potassium ion transmembrane transport	3.48E-02
143	GO:0016126: sterol biosynthetic process	3.78E-02
144	GO:0010027: thylakoid membrane organization	3.78E-02
145	GO:0015995: chlorophyll biosynthetic process	4.25E-02
146	GO:0010411: xyloglucan metabolic process	4.25E-02
147	GO:0006950: response to stress	4.25E-02
148	GO:0018298: protein-chromophore linkage	4.57E-02
149	GO:0008219: cell death	4.57E-02
150	GO:0009407: toxin catabolic process	4.89E-02
151	GO:0006811: ion transport	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
2	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
3	GO:0050486: intramolecular transferase activity, transferring hydroxy groups	0.00E+00
4	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
5	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
6	GO:0017153: sodium:dicarboxylate symporter activity	0.00E+00
7	GO:0008482: sulfite oxidase activity	0.00E+00
8	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
9	GO:0042030: ATPase inhibitor activity	0.00E+00
10	GO:0004592: pantoate-beta-alanine ligase activity	0.00E+00
11	GO:0016491: oxidoreductase activity	2.85E-08
12	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.39E-05
13	GO:0004180: carboxypeptidase activity	1.39E-05
14	GO:0008106: alcohol dehydrogenase (NADP+) activity	3.12E-05
15	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	3.12E-05
16	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.29E-04
17	GO:0004176: ATP-dependent peptidase activity	1.38E-04
18	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	2.92E-04
19	GO:0016780: phosphotransferase activity, for other substituted phosphate groups	2.92E-04
20	GO:0008802: betaine-aldehyde dehydrogenase activity	2.92E-04
21	GO:0080139: borate efflux transmembrane transporter activity	2.92E-04
22	GO:0016783: sulfurtransferase activity	2.92E-04
23	GO:0004307: ethanolaminephosphotransferase activity	2.92E-04
24	GO:0004328: formamidase activity	2.92E-04
25	GO:0045153: electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity	2.92E-04
26	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	2.92E-04
27	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.92E-04
28	GO:0004197: cysteine-type endopeptidase activity	4.03E-04
29	GO:0008237: metallopeptidase activity	5.13E-04
30	GO:0033201: alpha-1,4-glucan synthase activity	6.40E-04
31	GO:0015173: aromatic amino acid transmembrane transporter activity	6.40E-04
32	GO:0050347: trans-octaprenyltranstransferase activity	6.40E-04
33	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	6.40E-04
34	GO:0009973: adenylyl-sulfate reductase activity	6.40E-04
35	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	6.40E-04
36	GO:0030572: phosphatidyltransferase activity	6.40E-04
37	GO:0004046: aminoacylase activity	6.40E-04
38	GO:0004142: diacylglycerol cholinephosphotransferase activity	6.40E-04
39	GO:0003988: acetyl-CoA C-acyltransferase activity	6.40E-04
40	GO:0004450: isocitrate dehydrogenase (NADP+) activity	6.40E-04
41	GO:0015179: L-amino acid transmembrane transporter activity	6.40E-04
42	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	6.40E-04
43	GO:0008236: serine-type peptidase activity	7.81E-04
44	GO:0004222: metalloendopeptidase activity	9.39E-04
45	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.04E-03
46	GO:0046524: sucrose-phosphate synthase activity	1.04E-03
47	GO:0004373: glycogen (starch) synthase activity	1.04E-03
48	GO:0003913: DNA photolyase activity	1.04E-03
49	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.04E-03
50	GO:0004557: alpha-galactosidase activity	1.04E-03
51	GO:0003861: 3-isopropylmalate dehydratase activity	1.04E-03
52	GO:0004096: catalase activity	1.04E-03
53	GO:0000254: C-4 methylsterol oxidase activity	1.48E-03
54	GO:0015175: neutral amino acid transmembrane transporter activity	1.48E-03
55	GO:0004416: hydroxyacylglutathione hydrolase activity	1.48E-03
56	GO:0004792: thiosulfate sulfurtransferase activity	1.48E-03
57	GO:0015203: polyamine transmembrane transporter activity	1.48E-03
58	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.48E-03
59	GO:0046715: borate transmembrane transporter activity	1.48E-03
60	GO:0016987: sigma factor activity	1.99E-03
61	GO:0015210: uracil transmembrane transporter activity	1.99E-03
62	GO:0009011: starch synthase activity	1.99E-03
63	GO:0004301: epoxide hydrolase activity	1.99E-03
64	GO:0001053: plastid sigma factor activity	1.99E-03
65	GO:0042936: dipeptide transporter activity	1.99E-03
66	GO:0005452: inorganic anion exchanger activity	2.54E-03
67	GO:0008177: succinate dehydrogenase (ubiquinone) activity	2.54E-03
68	GO:0030151: molybdenum ion binding	2.54E-03
69	GO:0015301: anion:anion antiporter activity	2.54E-03
70	GO:0008234: cysteine-type peptidase activity	2.55E-03
71	GO:0010181: FMN binding	2.91E-03
72	GO:0016853: isomerase activity	2.91E-03
73	GO:0004709: MAP kinase kinase kinase activity	3.14E-03
74	GO:0000293: ferric-chelate reductase activity	3.14E-03
75	GO:0004029: aldehyde dehydrogenase (NAD) activity	3.14E-03
76	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	3.14E-03
77	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	3.14E-03
78	GO:0016161: beta-amylase activity	3.77E-03
79	GO:0016157: sucrose synthase activity	3.77E-03
80	GO:0005242: inward rectifier potassium channel activity	3.77E-03
81	GO:0051920: peroxiredoxin activity	3.77E-03
82	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.80E-03
83	GO:0020037: heme binding	3.96E-03
84	GO:0016621: cinnamoyl-CoA reductase activity	4.45E-03
85	GO:0009881: photoreceptor activity	4.45E-03
86	GO:0015140: malate transmembrane transporter activity	4.45E-03
87	GO:0005506: iron ion binding	4.64E-03
88	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	5.17E-03
89	GO:0004034: aldose 1-epimerase activity	5.17E-03
90	GO:0016209: antioxidant activity	5.17E-03
91	GO:0008889: glycerophosphodiester phosphodiesterase activity	6.71E-03
92	GO:0000989: transcription factor activity, transcription factor binding	6.71E-03
93	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	6.71E-03
94	GO:0015174: basic amino acid transmembrane transporter activity	7.54E-03
95	GO:0016844: strictosidine synthase activity	7.54E-03
96	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	7.54E-03
97	GO:0051539: 4 iron, 4 sulfur cluster binding	9.10E-03
98	GO:0042802: identical protein binding	9.56E-03
99	GO:0004364: glutathione transferase activity	9.90E-03
100	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.12E-02
101	GO:0005315: inorganic phosphate transmembrane transporter activity	1.12E-02
102	GO:0031072: heat shock protein binding	1.12E-02
103	GO:0015293: symporter activity	1.16E-02
104	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.20E-02
105	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.22E-02
106	GO:0051287: NAD binding	1.25E-02
107	GO:0016788: hydrolase activity, acting on ester bonds	1.26E-02
108	GO:0016887: ATPase activity	1.30E-02
109	GO:0005528: FK506 binding	1.54E-02
110	GO:0015171: amino acid transmembrane transporter activity	1.54E-02
111	GO:0005215: transporter activity	1.80E-02
112	GO:0016746: transferase activity, transferring acyl groups	2.05E-02
113	GO:0015035: protein disulfide oxidoreductase activity	2.05E-02
114	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.23E-02
115	GO:0047134: protein-disulfide reductase activity	2.25E-02
116	GO:0030551: cyclic nucleotide binding	2.37E-02
117	GO:0005249: voltage-gated potassium channel activity	2.37E-02
118	GO:0008080: N-acetyltransferase activity	2.50E-02
119	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.50E-02
120	GO:0050662: coenzyme binding	2.64E-02
121	GO:0004791: thioredoxin-disulfide reductase activity	2.64E-02
122	GO:0019825: oxygen binding	2.69E-02
123	GO:0030170: pyridoxal phosphate binding	2.76E-02
124	GO:0048038: quinone binding	2.91E-02
125	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.91E-02
126	GO:0015297: antiporter activity	3.28E-02
127	GO:0016791: phosphatase activity	3.34E-02
128	GO:0008483: transaminase activity	3.48E-02
129	GO:0016413: O-acetyltransferase activity	3.63E-02
130	GO:0004721: phosphoprotein phosphatase activity	4.25E-02
131	GO:0030247: polysaccharide binding	4.25E-02
132	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.35E-02
133	GO:0015238: drug transmembrane transporter activity	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0097708: intracellular vesicle	0.00E+00
2	GO:0009507: chloroplast	5.90E-09
3	GO:0005777: peroxisome	1.92E-06
4	GO:0005773: vacuole	3.80E-06
5	GO:0005764: lysosome	6.23E-05
6	GO:0009501: amyloplast	2.91E-04
7	GO:0043674: columella	2.92E-04
8	GO:0031972: chloroplast intermembrane space	2.92E-04
9	GO:0031969: chloroplast membrane	8.19E-04
10	GO:0009535: chloroplast thylakoid membrane	1.04E-03
11	GO:0016328: lateral plasma membrane	1.04E-03
12	GO:0009532: plastid stroma	1.66E-03
13	GO:0009526: plastid envelope	1.99E-03
14	GO:0031372: UBC13-MMS2 complex	1.99E-03
15	GO:0009536: plastid	2.29E-03
16	GO:0005746: mitochondrial respiratory chain	2.54E-03
17	GO:0009941: chloroplast envelope	2.75E-03
18	GO:0005747: mitochondrial respiratory chain complex I	2.89E-03
19	GO:0009706: chloroplast inner membrane	3.51E-03
20	GO:0009840: chloroplastic endopeptidase Clp complex	3.77E-03
21	GO:0010319: stromule	4.30E-03
22	GO:0031982: vesicle	5.17E-03
23	GO:0005779: integral component of peroxisomal membrane	5.92E-03
24	GO:0009514: glyoxysome	5.92E-03
25	GO:0005615: extracellular space	8.12E-03
26	GO:0005884: actin filament	9.30E-03
27	GO:0005750: mitochondrial respiratory chain complex III	1.22E-02
28	GO:0042651: thylakoid membrane	1.65E-02
29	GO:0005739: mitochondrion	2.27E-02
30	GO:0010287: plastoglobule	2.36E-02
31	GO:0009543: chloroplast thylakoid lumen	2.49E-02
32	GO:0005829: cytosol	2.66E-02
33	GO:0005759: mitochondrial matrix	3.13E-02
34	GO:0005778: peroxisomal membrane	3.48E-02
35	GO:0009570: chloroplast stroma	3.52E-02
36	GO:0016021: integral component of membrane	3.76E-02
37	GO:0005887: integral component of plasma membrane	3.85E-02