GO Enrichment Analysis of Co-expressed Genes with
AT1G64880
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1904874: positive regulation of telomerase RNA localization to Cajal body | 0.00E+00 |
| 2 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 3 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 4 | GO:1990258: histone glutamine methylation | 0.00E+00 |
| 5 | GO:0051050: positive regulation of transport | 0.00E+00 |
| 6 | GO:0031120: snRNA pseudouridine synthesis | 0.00E+00 |
| 7 | GO:0031591: wybutosine biosynthetic process | 0.00E+00 |
| 8 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 9 | GO:0031118: rRNA pseudouridine synthesis | 0.00E+00 |
| 10 | GO:0000740: nuclear membrane fusion | 0.00E+00 |
| 11 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 12 | GO:0045041: protein import into mitochondrial intermembrane space | 0.00E+00 |
| 13 | GO:0000494: box C/D snoRNA 3'-end processing | 0.00E+00 |
| 14 | GO:0006412: translation | 1.06E-37 |
| 15 | GO:0006364: rRNA processing | 7.86E-13 |
| 16 | GO:0006458: 'de novo' protein folding | 9.98E-09 |
| 17 | GO:0000027: ribosomal large subunit assembly | 2.89E-08 |
| 18 | GO:0042254: ribosome biogenesis | 2.78E-07 |
| 19 | GO:0042026: protein refolding | 1.68E-06 |
| 20 | GO:0048569: post-embryonic animal organ development | 2.51E-06 |
| 21 | GO:0061077: chaperone-mediated protein folding | 2.74E-06 |
| 22 | GO:0008033: tRNA processing | 7.03E-06 |
| 23 | GO:0010197: polar nucleus fusion | 8.28E-06 |
| 24 | GO:0010162: seed dormancy process | 1.51E-05 |
| 25 | GO:0006626: protein targeting to mitochondrion | 3.04E-05 |
| 26 | GO:0009553: embryo sac development | 3.59E-05 |
| 27 | GO:0031167: rRNA methylation | 6.05E-05 |
| 28 | GO:0001731: formation of translation preinitiation complex | 8.88E-05 |
| 29 | GO:0007005: mitochondrion organization | 9.74E-05 |
| 30 | GO:0000245: spliceosomal complex assembly | 1.23E-04 |
| 31 | GO:0009955: adaxial/abaxial pattern specification | 1.23E-04 |
| 32 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.32E-04 |
| 33 | GO:0006169: adenosine salvage | 2.32E-04 |
| 34 | GO:0006407: rRNA export from nucleus | 2.32E-04 |
| 35 | GO:0035266: meristem growth | 2.32E-04 |
| 36 | GO:0006177: GMP biosynthetic process | 2.32E-04 |
| 37 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.32E-04 |
| 38 | GO:0080156: mitochondrial mRNA modification | 2.37E-04 |
| 39 | GO:0001510: RNA methylation | 2.55E-04 |
| 40 | GO:0009735: response to cytokinin | 5.09E-04 |
| 41 | GO:0009967: positive regulation of signal transduction | 5.15E-04 |
| 42 | GO:0006435: threonyl-tRNA aminoacylation | 5.15E-04 |
| 43 | GO:0045859: regulation of protein kinase activity | 5.15E-04 |
| 44 | GO:2000072: regulation of defense response to fungus, incompatible interaction | 5.15E-04 |
| 45 | GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 5.15E-04 |
| 46 | GO:0010198: synergid death | 5.15E-04 |
| 47 | GO:0006446: regulation of translational initiation | 7.26E-04 |
| 48 | GO:0006954: inflammatory response | 8.37E-04 |
| 49 | GO:0002181: cytoplasmic translation | 8.37E-04 |
| 50 | GO:0042256: mature ribosome assembly | 8.37E-04 |
| 51 | GO:0030150: protein import into mitochondrial matrix | 9.95E-04 |
| 52 | GO:0009944: polarity specification of adaxial/abaxial axis | 9.95E-04 |
| 53 | GO:0008283: cell proliferation | 1.01E-03 |
| 54 | GO:0006164: purine nucleotide biosynthetic process | 1.19E-03 |
| 55 | GO:0009855: determination of bilateral symmetry | 1.19E-03 |
| 56 | GO:0051131: chaperone-mediated protein complex assembly | 1.19E-03 |
| 57 | GO:0009558: embryo sac cellularization | 1.19E-03 |
| 58 | GO:0006515: misfolded or incompletely synthesized protein catabolic process | 1.19E-03 |
| 59 | GO:0007004: telomere maintenance via telomerase | 1.19E-03 |
| 60 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.19E-03 |
| 61 | GO:0009294: DNA mediated transformation | 1.42E-03 |
| 62 | GO:0042273: ribosomal large subunit biogenesis | 1.59E-03 |
| 63 | GO:0044209: AMP salvage | 2.03E-03 |
| 64 | GO:0016554: cytidine to uridine editing | 2.50E-03 |
| 65 | GO:0000741: karyogamy | 2.50E-03 |
| 66 | GO:0000470: maturation of LSU-rRNA | 2.50E-03 |
| 67 | GO:0000398: mRNA splicing, via spliceosome | 2.75E-03 |
| 68 | GO:0016444: somatic cell DNA recombination | 3.00E-03 |
| 69 | GO:0080186: developmental vegetative growth | 3.54E-03 |
| 70 | GO:0001522: pseudouridine synthesis | 4.10E-03 |
| 71 | GO:0000028: ribosomal small subunit assembly | 4.10E-03 |
| 72 | GO:0001558: regulation of cell growth | 4.70E-03 |
| 73 | GO:0043562: cellular response to nitrogen levels | 4.70E-03 |
| 74 | GO:0010311: lateral root formation | 4.73E-03 |
| 75 | GO:0048507: meristem development | 5.32E-03 |
| 76 | GO:0006189: 'de novo' IMP biosynthetic process | 5.32E-03 |
| 77 | GO:0007338: single fertilization | 5.32E-03 |
| 78 | GO:0010449: root meristem growth | 5.97E-03 |
| 79 | GO:0000387: spliceosomal snRNP assembly | 5.97E-03 |
| 80 | GO:0030422: production of siRNA involved in RNA interference | 6.65E-03 |
| 81 | GO:0006259: DNA metabolic process | 6.65E-03 |
| 82 | GO:0006913: nucleocytoplasmic transport | 7.35E-03 |
| 83 | GO:0010015: root morphogenesis | 7.35E-03 |
| 84 | GO:0006820: anion transport | 8.08E-03 |
| 85 | GO:0009965: leaf morphogenesis | 8.27E-03 |
| 86 | GO:2000012: regulation of auxin polar transport | 8.84E-03 |
| 87 | GO:0010073: meristem maintenance | 1.30E-02 |
| 88 | GO:0051302: regulation of cell division | 1.30E-02 |
| 89 | GO:0016569: covalent chromatin modification | 1.33E-02 |
| 90 | GO:0006334: nucleosome assembly | 1.39E-02 |
| 91 | GO:0006457: protein folding | 1.42E-02 |
| 92 | GO:0006396: RNA processing | 1.46E-02 |
| 93 | GO:0071215: cellular response to abscisic acid stimulus | 1.57E-02 |
| 94 | GO:0046686: response to cadmium ion | 1.81E-02 |
| 95 | GO:0010501: RNA secondary structure unwinding | 1.87E-02 |
| 96 | GO:0010305: leaf vascular tissue pattern formation | 1.97E-02 |
| 97 | GO:0009960: endosperm development | 1.97E-02 |
| 98 | GO:0009790: embryo development | 2.08E-02 |
| 99 | GO:0006635: fatty acid beta-oxidation | 2.29E-02 |
| 100 | GO:0016032: viral process | 2.40E-02 |
| 101 | GO:0009567: double fertilization forming a zygote and endosperm | 2.62E-02 |
| 102 | GO:0016579: protein deubiquitination | 2.86E-02 |
| 103 | GO:0042128: nitrate assimilation | 3.22E-02 |
| 104 | GO:0016049: cell growth | 3.47E-02 |
| 105 | GO:0006811: ion transport | 3.85E-02 |
| 106 | GO:0015031: protein transport | 3.90E-02 |
| 107 | GO:0048527: lateral root development | 3.98E-02 |
| 108 | GO:0000724: double-strand break repair via homologous recombination | 4.12E-02 |
| 109 | GO:0006099: tricarboxylic acid cycle | 4.39E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034513: box H/ACA snoRNA binding | 0.00E+00 |
| 2 | GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity | 0.00E+00 |
| 3 | GO:0102522: tRNA 4-demethylwyosine alpha-amino-alpha-carboxypropyltransferase activity | 0.00E+00 |
| 4 | GO:1990259: histone-glutamine methyltransferase activity | 0.00E+00 |
| 5 | GO:0003735: structural constituent of ribosome | 5.80E-48 |
| 6 | GO:0003723: RNA binding | 2.24E-13 |
| 7 | GO:0030515: snoRNA binding | 9.12E-11 |
| 8 | GO:0019843: rRNA binding | 4.73E-10 |
| 9 | GO:0003729: mRNA binding | 7.19E-10 |
| 10 | GO:0044183: protein binding involved in protein folding | 3.28E-09 |
| 11 | GO:0051082: unfolded protein binding | 2.55E-06 |
| 12 | GO:0008649: rRNA methyltransferase activity | 9.11E-06 |
| 13 | GO:0008097: 5S rRNA binding | 2.08E-05 |
| 14 | GO:0004407: histone deacetylase activity | 6.28E-05 |
| 15 | GO:0003746: translation elongation factor activity | 7.43E-05 |
| 16 | GO:0031369: translation initiation factor binding | 8.88E-05 |
| 17 | GO:0000166: nucleotide binding | 1.30E-04 |
| 18 | GO:0004679: AMP-activated protein kinase activity | 2.32E-04 |
| 19 | GO:0004001: adenosine kinase activity | 2.32E-04 |
| 20 | GO:0048037: cofactor binding | 2.32E-04 |
| 21 | GO:0042134: rRNA primary transcript binding | 2.32E-04 |
| 22 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 5.15E-04 |
| 23 | GO:0070361: mitochondrial light strand promoter anti-sense binding | 5.15E-04 |
| 24 | GO:0005078: MAP-kinase scaffold activity | 5.15E-04 |
| 25 | GO:0035241: protein-arginine omega-N monomethyltransferase activity | 5.15E-04 |
| 26 | GO:0004829: threonine-tRNA ligase activity | 5.15E-04 |
| 27 | GO:0043141: ATP-dependent 5'-3' DNA helicase activity | 5.15E-04 |
| 28 | GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity | 5.15E-04 |
| 29 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 5.15E-04 |
| 30 | GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity | 5.15E-04 |
| 31 | GO:0003938: IMP dehydrogenase activity | 5.15E-04 |
| 32 | GO:0070034: telomerase RNA binding | 5.15E-04 |
| 33 | GO:0009982: pseudouridine synthase activity | 6.45E-04 |
| 34 | GO:0050897: cobalt ion binding | 6.58E-04 |
| 35 | GO:0008469: histone-arginine N-methyltransferase activity | 8.37E-04 |
| 36 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 8.37E-04 |
| 37 | GO:0005507: copper ion binding | 1.22E-03 |
| 38 | GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity | 2.50E-03 |
| 39 | GO:0019887: protein kinase regulator activity | 3.00E-03 |
| 40 | GO:0008235: metalloexopeptidase activity | 3.54E-03 |
| 41 | GO:0004004: ATP-dependent RNA helicase activity | 4.07E-03 |
| 42 | GO:0015288: porin activity | 4.10E-03 |
| 43 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 4.50E-03 |
| 44 | GO:0008308: voltage-gated anion channel activity | 4.70E-03 |
| 45 | GO:0003678: DNA helicase activity | 5.32E-03 |
| 46 | GO:0000049: tRNA binding | 8.08E-03 |
| 47 | GO:0005524: ATP binding | 8.45E-03 |
| 48 | GO:0000175: 3'-5'-exoribonuclease activity | 8.84E-03 |
| 49 | GO:0015266: protein channel activity | 8.84E-03 |
| 50 | GO:0031072: heat shock protein binding | 8.84E-03 |
| 51 | GO:0051087: chaperone binding | 1.30E-02 |
| 52 | GO:0036459: thiol-dependent ubiquitinyl hydrolase activity | 1.39E-02 |
| 53 | GO:0004176: ATP-dependent peptidase activity | 1.39E-02 |
| 54 | GO:0008026: ATP-dependent helicase activity | 1.50E-02 |
| 55 | GO:0004812: aminoacyl-tRNA ligase activity | 1.77E-02 |
| 56 | GO:0010181: FMN binding | 2.07E-02 |
| 57 | GO:0003743: translation initiation factor activity | 2.87E-02 |
| 58 | GO:0008236: serine-type peptidase activity | 3.47E-02 |
| 59 | GO:0008168: methyltransferase activity | 3.65E-02 |
| 60 | GO:0003697: single-stranded DNA binding | 4.25E-02 |
| 61 | GO:0042393: histone binding | 4.67E-02 |
| 62 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.67E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0072589: box H/ACA scaRNP complex | 0.00E+00 |
| 2 | GO:0005832: chaperonin-containing T-complex | 0.00E+00 |
| 3 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 4 | GO:0090661: box H/ACA telomerase RNP complex | 0.00E+00 |
| 5 | GO:0005730: nucleolus | 1.92E-31 |
| 6 | GO:0022626: cytosolic ribosome | 5.40E-29 |
| 7 | GO:0005840: ribosome | 2.07E-27 |
| 8 | GO:0022625: cytosolic large ribosomal subunit | 1.92E-25 |
| 9 | GO:0005829: cytosol | 4.84E-16 |
| 10 | GO:0022627: cytosolic small ribosomal subunit | 5.82E-16 |
| 11 | GO:0015934: large ribosomal subunit | 2.43E-14 |
| 12 | GO:0032040: small-subunit processome | 5.02E-09 |
| 13 | GO:0005774: vacuolar membrane | 2.52E-08 |
| 14 | GO:0015030: Cajal body | 1.49E-07 |
| 15 | GO:0031428: box C/D snoRNP complex | 9.57E-07 |
| 16 | GO:0005739: mitochondrion | 1.05E-06 |
| 17 | GO:0005773: vacuole | 2.43E-06 |
| 18 | GO:0009506: plasmodesma | 6.51E-06 |
| 19 | GO:0031429: box H/ACA snoRNP complex | 2.08E-05 |
| 20 | GO:0016282: eukaryotic 43S preinitiation complex | 8.88E-05 |
| 21 | GO:0005759: mitochondrial matrix | 1.05E-04 |
| 22 | GO:0005737: cytoplasm | 1.09E-04 |
| 23 | GO:0033290: eukaryotic 48S preinitiation complex | 1.23E-04 |
| 24 | GO:0030686: 90S preribosome | 2.32E-04 |
| 25 | GO:0005742: mitochondrial outer membrane translocase complex | 2.55E-04 |
| 26 | GO:0005747: mitochondrial respiratory chain complex I | 2.78E-04 |
| 27 | GO:0005852: eukaryotic translation initiation factor 3 complex | 4.97E-04 |
| 28 | GO:0071010: prespliceosome | 5.15E-04 |
| 29 | GO:0019013: viral nucleocapsid | 6.45E-04 |
| 30 | GO:0034715: pICln-Sm protein complex | 8.37E-04 |
| 31 | GO:0034719: SMN-Sm protein complex | 8.37E-04 |
| 32 | GO:0015935: small ribosomal subunit | 1.20E-03 |
| 33 | GO:0005682: U5 snRNP | 1.59E-03 |
| 34 | GO:0005834: heterotrimeric G-protein complex | 1.97E-03 |
| 35 | GO:0000178: exosome (RNase complex) | 2.03E-03 |
| 36 | GO:0005687: U4 snRNP | 2.03E-03 |
| 37 | GO:0097526: spliceosomal tri-snRNP complex | 2.03E-03 |
| 38 | GO:0009507: chloroplast | 2.33E-03 |
| 39 | GO:0000243: commitment complex | 2.50E-03 |
| 40 | GO:0005732: small nucleolar ribonucleoprotein complex | 2.56E-03 |
| 41 | GO:0016363: nuclear matrix | 3.00E-03 |
| 42 | GO:0005689: U12-type spliceosomal complex | 3.00E-03 |
| 43 | GO:0030687: preribosome, large subunit precursor | 3.54E-03 |
| 44 | GO:0046930: pore complex | 4.70E-03 |
| 45 | GO:0005618: cell wall | 5.18E-03 |
| 46 | GO:0005685: U1 snRNP | 5.32E-03 |
| 47 | GO:0016604: nuclear body | 5.97E-03 |
| 48 | GO:0071011: precatalytic spliceosome | 5.97E-03 |
| 49 | GO:0005686: U2 snRNP | 6.65E-03 |
| 50 | GO:0071013: catalytic step 2 spliceosome | 7.35E-03 |
| 51 | GO:0048471: perinuclear region of cytoplasm | 7.35E-03 |
| 52 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 9.00E-03 |
| 53 | GO:0016020: membrane | 9.61E-03 |
| 54 | GO:0005681: spliceosomal complex | 1.18E-02 |
| 55 | GO:0005758: mitochondrial intermembrane space | 1.21E-02 |
| 56 | GO:0005741: mitochondrial outer membrane | 1.39E-02 |
| 57 | GO:0005743: mitochondrial inner membrane | 1.58E-02 |
| 58 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 1.67E-02 |
| 59 | GO:0016592: mediator complex | 2.40E-02 |
| 60 | GO:0030529: intracellular ribonucleoprotein complex | 2.98E-02 |
| 61 | GO:0009536: plastid | 3.71E-02 |