co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G64640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006114: glycerol biosynthetic process	0.00E+00
2	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
3	GO:0015717: triose phosphate transport	0.00E+00
4	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
5	GO:0030155: regulation of cell adhesion	0.00E+00
6	GO:0015979: photosynthesis	3.13E-13
7	GO:0009773: photosynthetic electron transport in photosystem I	2.12E-08
8	GO:0018298: protein-chromophore linkage	9.26E-08
9	GO:0009768: photosynthesis, light harvesting in photosystem I	1.55E-07
10	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.13E-07
11	GO:0010206: photosystem II repair	1.07E-06
12	GO:0006000: fructose metabolic process	1.95E-06
13	GO:0006094: gluconeogenesis	4.21E-06
14	GO:0010021: amylopectin biosynthetic process	8.78E-06
15	GO:0061077: chaperone-mediated protein folding	1.31E-05
16	GO:0042549: photosystem II stabilization	2.21E-05
17	GO:0009769: photosynthesis, light harvesting in photosystem II	4.27E-05
18	GO:0006002: fructose 6-phosphate metabolic process	7.06E-05
19	GO:0043686: co-translational protein modification	9.88E-05
20	GO:0016311: dephosphorylation	1.03E-04
21	GO:0019684: photosynthesis, light reaction	1.48E-04
22	GO:0005986: sucrose biosynthetic process	1.98E-04
23	GO:0010207: photosystem II assembly	2.25E-04
24	GO:0035304: regulation of protein dephosphorylation	2.32E-04
25	GO:0018026: peptidyl-lysine monomethylation	2.32E-04
26	GO:0097054: L-glutamate biosynthetic process	2.32E-04
27	GO:0035436: triose phosphate transmembrane transport	3.86E-04
28	GO:0005977: glycogen metabolic process	3.86E-04
29	GO:0048281: inflorescence morphogenesis	3.86E-04
30	GO:0010148: transpiration	5.54E-04
31	GO:0006537: glutamate biosynthetic process	5.54E-04
32	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.54E-04
33	GO:0006020: inositol metabolic process	5.54E-04
34	GO:0071484: cellular response to light intensity	5.54E-04
35	GO:0019252: starch biosynthetic process	7.16E-04
36	GO:0015713: phosphoglycerate transport	7.37E-04
37	GO:0006021: inositol biosynthetic process	7.37E-04
38	GO:0019676: ammonia assimilation cycle	7.37E-04
39	GO:0015976: carbon utilization	7.37E-04
40	GO:0051322: anaphase	7.37E-04
41	GO:0009765: photosynthesis, light harvesting	7.37E-04
42	GO:0006109: regulation of carbohydrate metabolic process	7.37E-04
43	GO:0015994: chlorophyll metabolic process	7.37E-04
44	GO:0010600: regulation of auxin biosynthetic process	7.37E-04
45	GO:0031365: N-terminal protein amino acid modification	9.32E-04
46	GO:0010027: thylakoid membrane organization	1.09E-03
47	GO:0046855: inositol phosphate dephosphorylation	1.14E-03
48	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.14E-03
49	GO:0042793: transcription from plastid promoter	1.14E-03
50	GO:0009635: response to herbicide	1.14E-03
51	GO:0009643: photosynthetic acclimation	1.14E-03
52	GO:0006458: 'de novo' protein folding	1.36E-03
53	GO:0030488: tRNA methylation	1.36E-03
54	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.36E-03
55	GO:0042026: protein refolding	1.36E-03
56	GO:0010218: response to far red light	1.54E-03
57	GO:0009416: response to light stimulus	1.56E-03
58	GO:0070370: cellular heat acclimation	1.59E-03
59	GO:0009645: response to low light intensity stimulus	1.59E-03
60	GO:0010103: stomatal complex morphogenesis	1.59E-03
61	GO:0010196: nonphotochemical quenching	1.59E-03
62	GO:0009637: response to blue light	1.77E-03
63	GO:0016559: peroxisome fission	1.84E-03
64	GO:0010928: regulation of auxin mediated signaling pathway	1.84E-03
65	GO:0005978: glycogen biosynthetic process	1.84E-03
66	GO:0009642: response to light intensity	1.84E-03
67	GO:0001558: regulation of cell growth	2.10E-03
68	GO:0010114: response to red light	2.27E-03
69	GO:0006098: pentose-phosphate shunt	2.37E-03
70	GO:0009644: response to high light intensity	2.45E-03
71	GO:0005982: starch metabolic process	2.65E-03
72	GO:0010205: photoinhibition	2.65E-03
73	GO:0048829: root cap development	2.95E-03
74	GO:0031627: telomeric loop formation	2.95E-03
75	GO:0009089: lysine biosynthetic process via diaminopimelate	3.25E-03
76	GO:0009073: aromatic amino acid family biosynthetic process	3.25E-03
77	GO:0043085: positive regulation of catalytic activity	3.25E-03
78	GO:0009750: response to fructose	3.25E-03
79	GO:0045037: protein import into chloroplast stroma	3.57E-03
80	GO:0006790: sulfur compound metabolic process	3.57E-03
81	GO:0005983: starch catabolic process	3.57E-03
82	GO:0006096: glycolytic process	3.59E-03
83	GO:0010628: positive regulation of gene expression	3.89E-03
84	GO:0009767: photosynthetic electron transport chain	3.89E-03
85	GO:0019253: reductive pentose-phosphate cycle	4.22E-03
86	GO:0006302: double-strand break repair	4.22E-03
87	GO:0010020: chloroplast fission	4.22E-03
88	GO:0046854: phosphatidylinositol phosphorylation	4.57E-03
89	GO:0005985: sucrose metabolic process	4.57E-03
90	GO:0009944: polarity specification of adaxial/abaxial axis	5.28E-03
91	GO:0051302: regulation of cell division	5.65E-03
92	GO:0051321: meiotic cell cycle	6.03E-03
93	GO:0019915: lipid storage	6.03E-03
94	GO:0009269: response to desiccation	6.03E-03
95	GO:0001944: vasculature development	6.82E-03
96	GO:0009693: ethylene biosynthetic process	6.82E-03
97	GO:0006810: transport	8.15E-03
98	GO:0006662: glycerol ether metabolic process	8.50E-03
99	GO:0071554: cell wall organization or biogenesis	9.85E-03
100	GO:0009658: chloroplast organization	1.15E-02
101	GO:0000910: cytokinesis	1.23E-02
102	GO:0009627: systemic acquired resistance	1.38E-02
103	GO:0009737: response to abscisic acid	1.43E-02
104	GO:0015995: chlorophyll biosynthetic process	1.43E-02
105	GO:0009813: flavonoid biosynthetic process	1.60E-02
106	GO:0009834: plant-type secondary cell wall biogenesis	1.65E-02
107	GO:0010119: regulation of stomatal movement	1.71E-02
108	GO:0009853: photorespiration	1.82E-02
109	GO:0034599: cellular response to oxidative stress	1.88E-02
110	GO:0042742: defense response to bacterium	1.92E-02
111	GO:0006631: fatty acid metabolic process	2.06E-02
112	GO:0009744: response to sucrose	2.18E-02
113	GO:0009965: leaf morphogenesis	2.37E-02
114	GO:0009664: plant-type cell wall organization	2.57E-02
115	GO:0009585: red, far-red light phototransduction	2.70E-02
116	GO:0006364: rRNA processing	2.70E-02
117	GO:0009409: response to cold	2.81E-02
118	GO:0043086: negative regulation of catalytic activity	3.04E-02
119	GO:0009735: response to cytokinin	3.43E-02
120	GO:0006396: RNA processing	3.54E-02
121	GO:0009790: embryo development	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
2	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
3	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
4	GO:0031409: pigment binding	9.51E-08
5	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.13E-07
6	GO:0016168: chlorophyll binding	2.64E-06
7	GO:0042586: peptide deformylase activity	9.88E-05
8	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	9.88E-05
9	GO:0016041: glutamate synthase (ferredoxin) activity	9.88E-05
10	GO:0010242: oxygen evolving activity	9.88E-05
11	GO:0008266: poly(U) RNA binding	2.25E-04
12	GO:0003844: 1,4-alpha-glucan branching enzyme activity	2.32E-04
13	GO:0019156: isoamylase activity	2.32E-04
14	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	2.32E-04
15	GO:0047746: chlorophyllase activity	2.32E-04
16	GO:0052832: inositol monophosphate 3-phosphatase activity	2.32E-04
17	GO:0008934: inositol monophosphate 1-phosphatase activity	2.32E-04
18	GO:0052833: inositol monophosphate 4-phosphatase activity	2.32E-04
19	GO:0005528: FK506 binding	3.16E-04
20	GO:0005504: fatty acid binding	3.86E-04
21	GO:0071917: triose-phosphate transmembrane transporter activity	3.86E-04
22	GO:0004324: ferredoxin-NADP+ reductase activity	3.86E-04
23	GO:0043169: cation binding	3.86E-04
24	GO:0003913: DNA photolyase activity	3.86E-04
25	GO:0016851: magnesium chelatase activity	5.54E-04
26	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	5.54E-04
27	GO:0045430: chalcone isomerase activity	7.37E-04
28	GO:0042277: peptide binding	7.37E-04
29	GO:0015120: phosphoglycerate transmembrane transporter activity	7.37E-04
30	GO:0016279: protein-lysine N-methyltransferase activity	7.37E-04
31	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	7.37E-04
32	GO:0019199: transmembrane receptor protein kinase activity	7.37E-04
33	GO:0003959: NADPH dehydrogenase activity	9.32E-04
34	GO:0051538: 3 iron, 4 sulfur cluster binding	9.32E-04
35	GO:0004556: alpha-amylase activity	1.14E-03
36	GO:0004462: lactoylglutathione lyase activity	1.14E-03
37	GO:0004332: fructose-bisphosphate aldolase activity	1.14E-03
38	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.36E-03
39	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.36E-03
40	GO:0009881: photoreceptor activity	1.59E-03
41	GO:0046872: metal ion binding	1.76E-03
42	GO:0004033: aldo-keto reductase (NADP) activity	1.84E-03
43	GO:0008173: RNA methyltransferase activity	2.10E-03
44	GO:0005198: structural molecule activity	2.54E-03
45	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.64E-03
46	GO:0008047: enzyme activator activity	2.95E-03
47	GO:0044183: protein binding involved in protein folding	3.25E-03
48	GO:0003691: double-stranded telomeric DNA binding	3.25E-03
49	GO:0004089: carbonate dehydratase activity	3.89E-03
50	GO:0031072: heat shock protein binding	3.89E-03
51	GO:0016787: hydrolase activity	3.92E-03
52	GO:0051082: unfolded protein binding	4.31E-03
53	GO:0004857: enzyme inhibitor activity	5.28E-03
54	GO:0008408: 3'-5' exonuclease activity	6.03E-03
55	GO:0003756: protein disulfide isomerase activity	7.23E-03
56	GO:0047134: protein-disulfide reductase activity	7.64E-03
57	GO:0008017: microtubule binding	7.77E-03
58	GO:0004791: thioredoxin-disulfide reductase activity	8.94E-03
59	GO:0042802: identical protein binding	9.44E-03
60	GO:0048038: quinone binding	9.85E-03
61	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.08E-02
62	GO:0000287: magnesium ion binding	1.13E-02
63	GO:0016413: O-acetyltransferase activity	1.23E-02
64	GO:0030145: manganese ion binding	1.71E-02
65	GO:0005509: calcium ion binding	1.74E-02
66	GO:0003993: acid phosphatase activity	1.88E-02
67	GO:0003924: GTPase activity	2.11E-02
68	GO:0016491: oxidoreductase activity	2.72E-02
69	GO:0015035: protein disulfide oxidoreductase activity	3.54E-02
70	GO:0019843: rRNA binding	4.07E-02
71	GO:0003735: structural constituent of ribosome	4.52E-02
72	GO:0008565: protein transporter activity	4.62E-02
73	GO:0005515: protein binding	4.65E-02
74	GO:0015297: antiporter activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0010368: chloroplast isoamylase complex	0.00E+00
3	GO:0009507: chloroplast	7.50E-35
4	GO:0009534: chloroplast thylakoid	9.97E-28
5	GO:0009535: chloroplast thylakoid membrane	4.84E-23
6	GO:0009941: chloroplast envelope	1.43E-19
7	GO:0009570: chloroplast stroma	2.83E-19
8	GO:0009579: thylakoid	4.95E-18
9	GO:0010287: plastoglobule	1.51E-12
10	GO:0009543: chloroplast thylakoid lumen	3.78E-09
11	GO:0030095: chloroplast photosystem II	5.52E-08
12	GO:0031977: thylakoid lumen	2.88E-07
13	GO:0009522: photosystem I	7.37E-07
14	GO:0030076: light-harvesting complex	6.43E-06
15	GO:0009654: photosystem II oxygen evolving complex	1.11E-05
16	GO:0019898: extrinsic component of membrane	3.77E-05
17	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	8.74E-05
18	GO:0000791: euchromatin	9.88E-05
19	GO:0009783: photosystem II antenna complex	9.88E-05
20	GO:0048046: apoplast	2.18E-04
21	GO:0030870: Mre11 complex	2.32E-04
22	GO:0000427: plastid-encoded plastid RNA polymerase complex	2.32E-04
23	GO:0042651: thylakoid membrane	3.49E-04
24	GO:0010007: magnesium chelatase complex	3.86E-04
25	GO:0009523: photosystem II	7.16E-04
26	GO:0009517: PSII associated light-harvesting complex II	7.37E-04
27	GO:0000795: synaptonemal complex	9.32E-04
28	GO:0009501: amyloplast	1.84E-03
29	GO:0009538: photosystem I reaction center	1.84E-03
30	GO:0000783: nuclear telomere cap complex	2.10E-03
31	GO:0009508: plastid chromosome	3.89E-03
32	GO:0009574: preprophase band	3.89E-03
33	GO:0009706: chloroplast inner membrane	4.31E-03
34	GO:0005623: cell	5.53E-03
35	GO:0015935: small ribosomal subunit	6.03E-03
36	GO:0009536: plastid	6.20E-03
37	GO:0000785: chromatin	1.03E-02
38	GO:0010319: stromule	1.18E-02
39	GO:0009295: nucleoid	1.18E-02
40	GO:0009707: chloroplast outer membrane	1.54E-02
41	GO:0009524: phragmoplast	4.22E-02
42	GO:0005759: mitochondrial matrix	4.78E-02