co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G64490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0001881: receptor recycling	0.00E+00
2	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
3	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
4	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
5	GO:0015746: citrate transport	0.00E+00
6	GO:0042430: indole-containing compound metabolic process	0.00E+00
7	GO:0070918: production of small RNA involved in gene silencing by RNA	0.00E+00
8	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
9	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
10	GO:0006412: translation	4.67E-63
11	GO:0042254: ribosome biogenesis	6.70E-28
12	GO:0000027: ribosomal large subunit assembly	4.90E-07
13	GO:0009735: response to cytokinin	1.54E-05
14	GO:0009963: positive regulation of flavonoid biosynthetic process	7.17E-05
15	GO:0009853: photorespiration	4.39E-04
16	GO:2001006: regulation of cellulose biosynthetic process	4.70E-04
17	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.70E-04
18	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.70E-04
19	GO:1901349: glucosinolate transport	4.70E-04
20	GO:0031539: positive regulation of anthocyanin metabolic process	4.70E-04
21	GO:0009852: auxin catabolic process	4.70E-04
22	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	4.70E-04
23	GO:0006407: rRNA export from nucleus	4.70E-04
24	GO:0090449: phloem glucosinolate loading	4.70E-04
25	GO:0000028: ribosomal small subunit assembly	5.86E-04
26	GO:0098656: anion transmembrane transport	8.55E-04
27	GO:0009245: lipid A biosynthetic process	8.55E-04
28	GO:0045905: positive regulation of translational termination	1.01E-03
29	GO:0071668: plant-type cell wall assembly	1.01E-03
30	GO:0045901: positive regulation of translational elongation	1.01E-03
31	GO:0019222: regulation of metabolic process	1.01E-03
32	GO:0006452: translational frameshifting	1.01E-03
33	GO:0006432: phenylalanyl-tRNA aminoacylation	1.01E-03
34	GO:0051603: proteolysis involved in cellular protein catabolic process	1.08E-03
35	GO:0006820: anion transport	1.55E-03
36	GO:0045793: positive regulation of cell size	1.65E-03
37	GO:0042256: mature ribosome assembly	1.65E-03
38	GO:1902626: assembly of large subunit precursor of preribosome	1.65E-03
39	GO:0008333: endosome to lysosome transport	1.65E-03
40	GO:0009150: purine ribonucleotide metabolic process	1.65E-03
41	GO:0006626: protein targeting to mitochondrion	1.76E-03
42	GO:0032877: positive regulation of DNA endoreduplication	2.39E-03
43	GO:0046836: glycolipid transport	2.39E-03
44	GO:1902358: sulfate transmembrane transport	2.39E-03
45	GO:0006166: purine ribonucleoside salvage	2.39E-03
46	GO:0070301: cellular response to hydrogen peroxide	2.39E-03
47	GO:0006107: oxaloacetate metabolic process	2.39E-03
48	GO:0006241: CTP biosynthetic process	2.39E-03
49	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.39E-03
50	GO:0006165: nucleoside diphosphate phosphorylation	2.39E-03
51	GO:0006228: UTP biosynthetic process	2.39E-03
52	GO:0006168: adenine salvage	2.39E-03
53	GO:0006487: protein N-linked glycosylation	2.75E-03
54	GO:0051781: positive regulation of cell division	3.22E-03
55	GO:0051365: cellular response to potassium ion starvation	3.22E-03
56	GO:0042274: ribosomal small subunit biogenesis	3.22E-03
57	GO:0006183: GTP biosynthetic process	3.22E-03
58	GO:0010363: regulation of plant-type hypersensitive response	3.22E-03
59	GO:0006621: protein retention in ER lumen	3.22E-03
60	GO:0032366: intracellular sterol transport	3.22E-03
61	GO:0009926: auxin polar transport	3.78E-03
62	GO:0005513: detection of calcium ion	4.13E-03
63	GO:1902183: regulation of shoot apical meristem development	4.13E-03
64	GO:0044209: AMP salvage	4.13E-03
65	GO:0006855: drug transmembrane transport	4.60E-03
66	GO:0015991: ATP hydrolysis coupled proton transport	5.09E-03
67	GO:0042631: cellular response to water deprivation	5.09E-03
68	GO:0045040: protein import into mitochondrial outer membrane	5.11E-03
69	GO:0003006: developmental process involved in reproduction	5.11E-03
70	GO:0006574: valine catabolic process	5.11E-03
71	GO:0015986: ATP synthesis coupled proton transport	5.91E-03
72	GO:0009648: photoperiodism	6.17E-03
73	GO:1901001: negative regulation of response to salt stress	6.17E-03
74	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	6.17E-03
75	GO:0000302: response to reactive oxygen species	6.79E-03
76	GO:0010044: response to aluminum ion	7.30E-03
77	GO:0032880: regulation of protein localization	7.30E-03
78	GO:1900056: negative regulation of leaf senescence	7.30E-03
79	GO:0009651: response to salt stress	7.82E-03
80	GO:0048658: anther wall tapetum development	8.49E-03
81	GO:0009231: riboflavin biosynthetic process	8.49E-03
82	GO:0009787: regulation of abscisic acid-activated signaling pathway	8.49E-03
83	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	8.49E-03
84	GO:0009642: response to light intensity	8.49E-03
85	GO:0009690: cytokinin metabolic process	8.49E-03
86	GO:0006506: GPI anchor biosynthetic process	8.49E-03
87	GO:0006511: ubiquitin-dependent protein catabolic process	8.92E-03
88	GO:0044030: regulation of DNA methylation	9.75E-03
89	GO:0009808: lignin metabolic process	9.75E-03
90	GO:0010099: regulation of photomorphogenesis	9.75E-03
91	GO:0010204: defense response signaling pathway, resistance gene-independent	9.75E-03
92	GO:0080167: response to karrikin	1.10E-02
93	GO:0009060: aerobic respiration	1.11E-02
94	GO:0015780: nucleotide-sugar transport	1.11E-02
95	GO:0009821: alkaloid biosynthetic process	1.11E-02
96	GO:0080144: amino acid homeostasis	1.11E-02
97	GO:0000387: spliceosomal snRNP assembly	1.25E-02
98	GO:0009409: response to cold	1.33E-02
99	GO:0043069: negative regulation of programmed cell death	1.39E-02
100	GO:0006995: cellular response to nitrogen starvation	1.39E-02
101	GO:0006032: chitin catabolic process	1.39E-02
102	GO:0045454: cell redox homeostasis	1.44E-02
103	GO:0072593: reactive oxygen species metabolic process	1.54E-02
104	GO:0000272: polysaccharide catabolic process	1.54E-02
105	GO:0006413: translational initiation	1.60E-02
106	GO:0016925: protein sumoylation	1.70E-02
107	GO:0008361: regulation of cell size	1.70E-02
108	GO:0006790: sulfur compound metabolic process	1.70E-02
109	GO:0046686: response to cadmium ion	1.79E-02
110	GO:0006006: glucose metabolic process	1.86E-02
111	GO:0050826: response to freezing	1.86E-02
112	GO:0010102: lateral root morphogenesis	1.86E-02
113	GO:0006807: nitrogen compound metabolic process	1.86E-02
114	GO:0006108: malate metabolic process	1.86E-02
115	GO:0010223: secondary shoot formation	2.03E-02
116	GO:0009934: regulation of meristem structural organization	2.03E-02
117	GO:0002237: response to molecule of bacterial origin	2.03E-02
118	GO:0010020: chloroplast fission	2.03E-02
119	GO:0007034: vacuolar transport	2.03E-02
120	GO:0009617: response to bacterium	2.19E-02
121	GO:0010039: response to iron ion	2.20E-02
122	GO:0009644: response to high light intensity	2.29E-02
123	GO:0006071: glycerol metabolic process	2.38E-02
124	GO:0042753: positive regulation of circadian rhythm	2.38E-02
125	GO:0009116: nucleoside metabolic process	2.56E-02
126	GO:0030150: protein import into mitochondrial matrix	2.56E-02
127	GO:0006289: nucleotide-excision repair	2.56E-02
128	GO:0031347: regulation of defense response	2.57E-02
129	GO:0015992: proton transport	2.94E-02
130	GO:0048511: rhythmic process	2.94E-02
131	GO:0061077: chaperone-mediated protein folding	2.94E-02
132	GO:0006306: DNA methylation	2.94E-02
133	GO:0006857: oligopeptide transport	3.06E-02
134	GO:0007005: mitochondrion organization	3.13E-02
135	GO:0010017: red or far-red light signaling pathway	3.13E-02
136	GO:0016226: iron-sulfur cluster assembly	3.13E-02
137	GO:0040007: growth	3.33E-02
138	GO:0010089: xylem development	3.54E-02
139	GO:0010584: pollen exine formation	3.54E-02
140	GO:0019722: calcium-mediated signaling	3.54E-02
141	GO:0055114: oxidation-reduction process	3.55E-02
142	GO:0009626: plant-type hypersensitive response	3.60E-02
143	GO:0009620: response to fungus	3.71E-02
144	GO:0016117: carotenoid biosynthetic process	3.74E-02
145	GO:0042147: retrograde transport, endosome to Golgi	3.74E-02
146	GO:0034220: ion transmembrane transport	3.96E-02
147	GO:0000413: protein peptidyl-prolyl isomerization	3.96E-02
148	GO:0010118: stomatal movement	3.96E-02
149	GO:0080022: primary root development	3.96E-02
150	GO:0009958: positive gravitropism	4.17E-02
151	GO:0051726: regulation of cell cycle	4.30E-02
152	GO:0055072: iron ion homeostasis	4.62E-02
153	GO:0006623: protein targeting to vacuole	4.62E-02
154	GO:0010193: response to ozone	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity	0.00E+00
2	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
3	GO:0050152: omega-amidase activity	0.00E+00
4	GO:0004746: riboflavin synthase activity	0.00E+00
5	GO:0003796: lysozyme activity	0.00E+00
6	GO:0003735: structural constituent of ribosome	1.62E-79
7	GO:0003729: mRNA binding	3.08E-19
8	GO:0019843: rRNA binding	7.62E-07
9	GO:0004298: threonine-type endopeptidase activity	2.44E-05
10	GO:0004129: cytochrome-c oxidase activity	9.85E-05
11	GO:0004576: oligosaccharyl transferase activity	1.25E-04
12	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.92E-04
13	GO:0031177: phosphopantetheine binding	2.73E-04
14	GO:0000035: acyl binding	3.65E-04
15	GO:0090448: glucosinolate:proton symporter activity	4.70E-04
16	GO:0015137: citrate transmembrane transporter activity	4.70E-04
17	GO:0008121: ubiquinol-cytochrome-c reductase activity	4.70E-04
18	GO:0005080: protein kinase C binding	4.70E-04
19	GO:0015288: porin activity	5.86E-04
20	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	5.86E-04
21	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	6.93E-04
22	GO:0008308: voltage-gated anion channel activity	7.14E-04
23	GO:0008517: folic acid transporter activity	1.01E-03
24	GO:0047364: desulfoglucosinolate sulfotransferase activity	1.01E-03
25	GO:0004047: aminomethyltransferase activity	1.01E-03
26	GO:0004826: phenylalanine-tRNA ligase activity	1.01E-03
27	GO:0051980: iron-nicotianamine transmembrane transporter activity	1.01E-03
28	GO:0052692: raffinose alpha-galactosidase activity	1.65E-03
29	GO:0004557: alpha-galactosidase activity	1.65E-03
30	GO:0004550: nucleoside diphosphate kinase activity	2.39E-03
31	GO:0047627: adenylylsulfatase activity	2.39E-03
32	GO:0008097: 5S rRNA binding	2.39E-03
33	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	2.39E-03
34	GO:0017089: glycolipid transporter activity	2.39E-03
35	GO:0003999: adenine phosphoribosyltransferase activity	2.39E-03
36	GO:0010011: auxin binding	3.22E-03
37	GO:0051861: glycolipid binding	3.22E-03
38	GO:0046923: ER retention sequence binding	3.22E-03
39	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	3.22E-03
40	GO:0070628: proteasome binding	3.22E-03
41	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	3.22E-03
42	GO:0050302: indole-3-acetaldehyde oxidase activity	3.22E-03
43	GO:0031386: protein tag	4.13E-03
44	GO:0004040: amidase activity	4.13E-03
45	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.60E-03
46	GO:0031593: polyubiquitin binding	5.11E-03
47	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	5.11E-03
48	GO:0004656: procollagen-proline 4-dioxygenase activity	6.17E-03
49	GO:0051920: peroxiredoxin activity	6.17E-03
50	GO:0004602: glutathione peroxidase activity	6.17E-03
51	GO:0004872: receptor activity	6.34E-03
52	GO:0005338: nucleotide-sugar transmembrane transporter activity	7.30E-03
53	GO:0042162: telomeric DNA binding	7.30E-03
54	GO:0016788: hydrolase activity, acting on ester bonds	8.13E-03
55	GO:0016209: antioxidant activity	8.49E-03
56	GO:0035064: methylated histone binding	8.49E-03
57	GO:0052747: sinapyl alcohol dehydrogenase activity	8.49E-03
58	GO:0004869: cysteine-type endopeptidase inhibitor activity	8.49E-03
59	GO:0043022: ribosome binding	8.49E-03
60	GO:0008271: secondary active sulfate transmembrane transporter activity	9.75E-03
61	GO:0008233: peptidase activity	1.07E-02
62	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.11E-02
63	GO:0016844: strictosidine synthase activity	1.25E-02
64	GO:0045309: protein phosphorylated amino acid binding	1.25E-02
65	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.29E-02
66	GO:0015238: drug transmembrane transporter activity	1.36E-02
67	GO:0004568: chitinase activity	1.39E-02
68	GO:0050897: cobalt ion binding	1.49E-02
69	GO:0008559: xenobiotic-transporting ATPase activity	1.54E-02
70	GO:0019904: protein domain specific binding	1.54E-02
71	GO:0008794: arsenate reductase (glutaredoxin) activity	1.54E-02
72	GO:0046961: proton-transporting ATPase activity, rotational mechanism	1.54E-02
73	GO:0003746: translation elongation factor activity	1.64E-02
74	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.64E-02
75	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.70E-02
76	GO:0015198: oligopeptide transporter activity	1.70E-02
77	GO:0015116: sulfate transmembrane transporter activity	1.70E-02
78	GO:0000049: tRNA binding	1.70E-02
79	GO:0004089: carbonate dehydratase activity	1.86E-02
80	GO:0015266: protein channel activity	1.86E-02
81	GO:0008266: poly(U) RNA binding	2.03E-02
82	GO:0008146: sulfotransferase activity	2.20E-02
83	GO:0051536: iron-sulfur cluster binding	2.56E-02
84	GO:0031418: L-ascorbic acid binding	2.56E-02
85	GO:0043130: ubiquitin binding	2.56E-02
86	GO:0005528: FK506 binding	2.56E-02
87	GO:0004601: peroxidase activity	3.03E-02
88	GO:0005199: structural constituent of cell wall	4.17E-02
89	GO:0015035: protein disulfide oxidoreductase activity	4.18E-02
90	GO:0052689: carboxylic ester hydrolase activity	4.46E-02

Rank	GO Term	Adjusted P value
1	GO:0016469: proton-transporting two-sector ATPase complex	0.00E+00
2	GO:0005840: ribosome	8.97E-65
3	GO:0022625: cytosolic large ribosomal subunit	6.62E-55
4	GO:0022626: cytosolic ribosome	1.35E-54
5	GO:0022627: cytosolic small ribosomal subunit	1.69E-35
6	GO:0005737: cytoplasm	3.96E-15
7	GO:0005774: vacuolar membrane	1.05E-14
8	GO:0005730: nucleolus	1.99E-14
9	GO:0005829: cytosol	4.08E-14
10	GO:0005773: vacuole	2.34E-13
11	GO:0009506: plasmodesma	1.54E-11
12	GO:0005618: cell wall	1.21E-10
13	GO:0016020: membrane	5.14E-09
14	GO:0015934: large ribosomal subunit	1.31E-07
15	GO:0005753: mitochondrial proton-transporting ATP synthase complex	2.63E-07
16	GO:0015935: small ribosomal subunit	8.57E-07
17	GO:0005750: mitochondrial respiratory chain complex III	7.85E-06
18	GO:0000502: proteasome complex	1.84E-05
19	GO:0045271: respiratory chain complex I	2.00E-05
20	GO:0005839: proteasome core complex	2.44E-05
21	GO:0005747: mitochondrial respiratory chain complex I	3.18E-05
22	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	1.25E-04
23	GO:0008250: oligosaccharyltransferase complex	1.92E-04
24	GO:0005886: plasma membrane	2.59E-04
25	GO:0030686: 90S preribosome	4.70E-04
26	GO:0046930: pore complex	7.14E-04
27	GO:0031966: mitochondrial membrane	9.22E-04
28	GO:0005697: telomerase holoenzyme complex	1.01E-03
29	GO:0005853: eukaryotic translation elongation factor 1 complex	1.65E-03
30	GO:0009530: primary cell wall	1.65E-03
31	GO:0033180: proton-transporting V-type ATPase, V1 domain	2.39E-03
32	GO:1990726: Lsm1-7-Pat1 complex	2.39E-03
33	GO:0000419: DNA-directed RNA polymerase V complex	2.48E-03
34	GO:0070469: respiratory chain	3.04E-03
35	GO:0016471: vacuolar proton-transporting V-type ATPase complex	3.22E-03
36	GO:0005741: mitochondrial outer membrane	3.34E-03
37	GO:0009536: plastid	3.97E-03
38	GO:0005746: mitochondrial respiratory chain	4.13E-03
39	GO:0005771: multivesicular body	5.11E-03
40	GO:0030904: retromer complex	5.11E-03
41	GO:0005783: endoplasmic reticulum	6.02E-03
42	GO:0005777: peroxisome	6.42E-03
43	GO:0045273: respiratory chain complex II	8.49E-03
44	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	8.49E-03
45	GO:0005688: U6 snRNP	8.49E-03
46	GO:0005732: small nucleolar ribonucleoprotein complex	9.72E-03
47	GO:0046540: U4/U6 x U5 tri-snRNP complex	9.75E-03
48	GO:0005742: mitochondrial outer membrane translocase complex	9.75E-03
49	GO:0005788: endoplasmic reticulum lumen	1.04E-02
50	GO:0031090: organelle membrane	1.11E-02
51	GO:0071011: precatalytic spliceosome	1.25E-02
52	GO:0009707: chloroplast outer membrane	1.29E-02
53	GO:0005740: mitochondrial envelope	1.39E-02
54	GO:0000325: plant-type vacuole	1.49E-02
55	GO:0009507: chloroplast	1.51E-02
56	GO:0071013: catalytic step 2 spliceosome	1.54E-02
57	GO:0005759: mitochondrial matrix	1.55E-02
58	GO:0005665: DNA-directed RNA polymerase II, core complex	1.70E-02
59	GO:0031307: integral component of mitochondrial outer membrane	1.70E-02
60	GO:0019013: viral nucleocapsid	1.86E-02
61	GO:0009508: plastid chromosome	1.86E-02
62	GO:0005758: mitochondrial intermembrane space	2.56E-02
63	GO:0005794: Golgi apparatus	3.15E-02
64	GO:0005739: mitochondrion	3.77E-02
65	GO:0005622: intracellular	4.04E-02