Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G64355

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031116: positive regulation of microtubule polymerization0.00E+00
2GO:0042820: vitamin B6 catabolic process0.00E+00
3GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
4GO:0006114: glycerol biosynthetic process0.00E+00
5GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
6GO:0008298: intracellular mRNA localization0.00E+00
7GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
8GO:0042371: vitamin K biosynthetic process0.00E+00
9GO:0006399: tRNA metabolic process0.00E+00
10GO:0070125: mitochondrial translational elongation0.00E+00
11GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
12GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
13GO:0090071: negative regulation of ribosome biogenesis0.00E+00
14GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
15GO:0042821: pyridoxal biosynthetic process0.00E+00
16GO:1902326: positive regulation of chlorophyll biosynthetic process5.13E-06
17GO:0090391: granum assembly1.82E-05
18GO:0015979: photosynthesis6.01E-05
19GO:0009793: embryo development ending in seed dormancy6.46E-05
20GO:0009765: photosynthesis, light harvesting7.15E-05
21GO:0010207: photosystem II assembly8.58E-05
22GO:0016123: xanthophyll biosynthetic process1.12E-04
23GO:0016120: carotene biosynthetic process1.12E-04
24GO:0009658: chloroplast organization1.58E-04
25GO:0009772: photosynthetic electron transport in photosystem II2.86E-04
26GO:0000481: maturation of 5S rRNA3.37E-04
27GO:0043686: co-translational protein modification3.37E-04
28GO:0006436: tryptophanyl-tRNA aminoacylation3.37E-04
29GO:0034337: RNA folding3.37E-04
30GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.37E-04
31GO:0006419: alanyl-tRNA aminoacylation3.37E-04
32GO:0000476: maturation of 4.5S rRNA3.37E-04
33GO:0009443: pyridoxal 5'-phosphate salvage3.37E-04
34GO:0000967: rRNA 5'-end processing3.37E-04
35GO:0048564: photosystem I assembly3.60E-04
36GO:0000373: Group II intron splicing5.29E-04
37GO:0006435: threonyl-tRNA aminoacylation7.34E-04
38GO:0034470: ncRNA processing7.34E-04
39GO:0010275: NAD(P)H dehydrogenase complex assembly7.34E-04
40GO:0010027: thylakoid membrane organization7.75E-04
41GO:0009773: photosynthetic electron transport in photosystem I8.40E-04
42GO:0018298: protein-chromophore linkage1.08E-03
43GO:0080167: response to karrikin1.18E-03
44GO:0051604: protein maturation1.19E-03
45GO:0001578: microtubule bundle formation1.19E-03
46GO:0005977: glycogen metabolic process1.19E-03
47GO:0006954: inflammatory response1.19E-03
48GO:0010020: chloroplast fission1.22E-03
49GO:0019853: L-ascorbic acid biosynthetic process1.36E-03
50GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center1.71E-03
51GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.71E-03
52GO:2001141: regulation of RNA biosynthetic process1.71E-03
53GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.71E-03
54GO:0009102: biotin biosynthetic process1.71E-03
55GO:0090307: mitotic spindle assembly1.71E-03
56GO:0009052: pentose-phosphate shunt, non-oxidative branch1.71E-03
57GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.71E-03
58GO:0006021: inositol biosynthetic process2.30E-03
59GO:0010021: amylopectin biosynthetic process2.30E-03
60GO:0051322: anaphase2.30E-03
61GO:0006221: pyrimidine nucleotide biosynthetic process2.30E-03
62GO:0015846: polyamine transport2.30E-03
63GO:0031122: cytoplasmic microtubule organization2.30E-03
64GO:0007020: microtubule nucleation2.30E-03
65GO:0006564: L-serine biosynthetic process2.93E-03
66GO:0010236: plastoquinone biosynthetic process2.93E-03
67GO:0031365: N-terminal protein amino acid modification2.93E-03
68GO:0046785: microtubule polymerization2.93E-03
69GO:0006364: rRNA processing2.93E-03
70GO:0016558: protein import into peroxisome matrix2.93E-03
71GO:0008033: tRNA processing3.10E-03
72GO:0046855: inositol phosphate dephosphorylation3.63E-03
73GO:0009643: photosynthetic acclimation3.63E-03
74GO:0042549: photosystem II stabilization3.63E-03
75GO:0006655: phosphatidylglycerol biosynthetic process3.63E-03
76GO:0010190: cytochrome b6f complex assembly3.63E-03
77GO:0032973: amino acid export3.63E-03
78GO:1901259: chloroplast rRNA processing4.37E-03
79GO:0017148: negative regulation of translation4.37E-03
80GO:0010189: vitamin E biosynthetic process4.37E-03
81GO:0042372: phylloquinone biosynthetic process4.37E-03
82GO:0032502: developmental process4.40E-03
83GO:0006400: tRNA modification5.15E-03
84GO:0006401: RNA catabolic process5.15E-03
85GO:0048528: post-embryonic root development5.15E-03
86GO:0043090: amino acid import5.15E-03
87GO:0010196: nonphotochemical quenching5.15E-03
88GO:0042255: ribosome assembly5.99E-03
89GO:0006353: DNA-templated transcription, termination5.99E-03
90GO:0006605: protein targeting5.99E-03
91GO:0032508: DNA duplex unwinding5.99E-03
92GO:0010492: maintenance of shoot apical meristem identity5.99E-03
93GO:0000105: histidine biosynthetic process5.99E-03
94GO:0009231: riboflavin biosynthetic process5.99E-03
95GO:0016559: peroxisome fission5.99E-03
96GO:0006402: mRNA catabolic process5.99E-03
97GO:0032544: plastid translation6.87E-03
98GO:0017004: cytochrome complex assembly6.87E-03
99GO:0071482: cellular response to light stimulus6.87E-03
100GO:0009657: plastid organization6.87E-03
101GO:0015995: chlorophyll biosynthetic process7.03E-03
102GO:0016311: dephosphorylation7.40E-03
103GO:0006098: pentose-phosphate shunt7.79E-03
104GO:0080144: amino acid homeostasis7.79E-03
105GO:0048507: meristem development7.79E-03
106GO:0031425: chloroplast RNA processing8.75E-03
107GO:0009451: RNA modification9.51E-03
108GO:0006949: syncytium formation9.76E-03
109GO:0009637: response to blue light9.89E-03
110GO:0006415: translational termination1.08E-02
111GO:1903507: negative regulation of nucleic acid-templated transcription1.08E-02
112GO:0006352: DNA-templated transcription, initiation1.08E-02
113GO:0018119: peptidyl-cysteine S-nitrosylation1.08E-02
114GO:0019684: photosynthesis, light reaction1.08E-02
115GO:0009089: lysine biosynthetic process via diaminopimelate1.08E-02
116GO:0008380: RNA splicing1.16E-02
117GO:0045037: protein import into chloroplast stroma1.19E-02
118GO:0006790: sulfur compound metabolic process1.19E-02
119GO:0005983: starch catabolic process1.19E-02
120GO:0016024: CDP-diacylglycerol biosynthetic process1.19E-02
121GO:0010114: response to red light1.28E-02
122GO:0010628: positive regulation of gene expression1.30E-02
123GO:0006094: gluconeogenesis1.30E-02
124GO:0009767: photosynthetic electron transport chain1.30E-02
125GO:2000012: regulation of auxin polar transport1.30E-02
126GO:0046854: phosphatidylinositol phosphorylation1.54E-02
127GO:0005975: carbohydrate metabolic process1.63E-02
128GO:0042254: ribosome biogenesis1.65E-02
129GO:0006863: purine nucleobase transport1.66E-02
130GO:0000162: tryptophan biosynthetic process1.66E-02
131GO:0007017: microtubule-based process1.92E-02
132GO:0009768: photosynthesis, light harvesting in photosystem I1.92E-02
133GO:0019953: sexual reproduction1.92E-02
134GO:0006418: tRNA aminoacylation for protein translation1.92E-02
135GO:0043622: cortical microtubule organization1.92E-02
136GO:0048511: rhythmic process2.05E-02
137GO:0019915: lipid storage2.05E-02
138GO:2000022: regulation of jasmonic acid mediated signaling pathway2.19E-02
139GO:0080092: regulation of pollen tube growth2.19E-02
140GO:0071369: cellular response to ethylene stimulus2.33E-02
141GO:0006012: galactose metabolic process2.33E-02
142GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.33E-02
143GO:0009306: protein secretion2.47E-02
144GO:0016117: carotenoid biosynthetic process2.62E-02
145GO:0000413: protein peptidyl-prolyl isomerization2.77E-02
146GO:0048868: pollen tube development2.92E-02
147GO:0006520: cellular amino acid metabolic process2.92E-02
148GO:0015986: ATP synthesis coupled proton transport3.07E-02
149GO:0007018: microtubule-based movement3.07E-02
150GO:0006814: sodium ion transport3.07E-02
151GO:0042752: regulation of circadian rhythm3.07E-02
152GO:0019252: starch biosynthetic process3.23E-02
153GO:0008654: phospholipid biosynthetic process3.23E-02
154GO:0032259: methylation3.26E-02
155GO:0010193: response to ozone3.39E-02
156GO:0006635: fatty acid beta-oxidation3.39E-02
157GO:0002229: defense response to oomycetes3.39E-02
158GO:0016032: viral process3.55E-02
159GO:0006397: mRNA processing3.62E-02
160GO:0009828: plant-type cell wall loosening3.88E-02
161GO:0006413: translational initiation3.96E-02
162GO:0000910: cytokinesis4.23E-02
163GO:0001666: response to hypoxia4.40E-02
164GO:0042128: nitrate assimilation4.76E-02
RankGO TermAdjusted P value
1GO:0004760: serine-pyruvate transaminase activity0.00E+00
2GO:0042623: ATPase activity, coupled0.00E+00
3GO:0010276: phytol kinase activity0.00E+00
4GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
5GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
6GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
7GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
8GO:0050281: serine-glyoxylate transaminase activity0.00E+00
9GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity0.00E+00
10GO:0004076: biotin synthase activity0.00E+00
11GO:0043136: glycerol-3-phosphatase activity0.00E+00
12GO:0000121: glycerol-1-phosphatase activity0.00E+00
13GO:0010349: L-galactose dehydrogenase activity0.00E+00
14GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
15GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
16GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
17GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
18GO:0045435: lycopene epsilon cyclase activity0.00E+00
19GO:0019808: polyamine binding0.00E+00
20GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.89E-06
21GO:0043495: protein anchor7.15E-05
22GO:0004045: aminoacyl-tRNA hydrolase activity7.15E-05
23GO:0005528: FK506 binding1.41E-04
24GO:0019899: enzyme binding2.86E-04
25GO:0019203: carbohydrate phosphatase activity3.37E-04
26GO:0042586: peptide deformylase activity3.37E-04
27GO:0004830: tryptophan-tRNA ligase activity3.37E-04
28GO:0004654: polyribonucleotide nucleotidyltransferase activity3.37E-04
29GO:0010347: L-galactose-1-phosphate phosphatase activity3.37E-04
30GO:0050308: sugar-phosphatase activity3.37E-04
31GO:0004813: alanine-tRNA ligase activity3.37E-04
32GO:0047911: galacturan 1,4-alpha-galacturonidase activity3.37E-04
33GO:0004033: aldo-keto reductase (NADP) activity3.60E-04
34GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.34E-04
35GO:0004617: phosphoglycerate dehydrogenase activity7.34E-04
36GO:0052832: inositol monophosphate 3-phosphatase activity7.34E-04
37GO:0008934: inositol monophosphate 1-phosphatase activity7.34E-04
38GO:0052833: inositol monophosphate 4-phosphatase activity7.34E-04
39GO:0030385: ferredoxin:thioredoxin reductase activity7.34E-04
40GO:0004829: threonine-tRNA ligase activity7.34E-04
41GO:0019156: isoamylase activity7.34E-04
42GO:0016168: chlorophyll binding8.32E-04
43GO:0019843: rRNA binding1.16E-03
44GO:0004751: ribose-5-phosphate isomerase activity1.19E-03
45GO:0070402: NADPH binding1.19E-03
46GO:0016149: translation release factor activity, codon specific1.71E-03
47GO:0043023: ribosomal large subunit binding1.71E-03
48GO:0008508: bile acid:sodium symporter activity1.71E-03
49GO:0009041: uridylate kinase activity1.71E-03
50GO:0008017: microtubule binding2.03E-03
51GO:0051537: 2 iron, 2 sulfur cluster binding2.22E-03
52GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.30E-03
53GO:0004659: prenyltransferase activity2.30E-03
54GO:0001053: plastid sigma factor activity2.30E-03
55GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.30E-03
56GO:0008453: alanine-glyoxylate transaminase activity2.30E-03
57GO:0080032: methyl jasmonate esterase activity2.30E-03
58GO:0016987: sigma factor activity2.30E-03
59GO:0043015: gamma-tubulin binding2.30E-03
60GO:0022891: substrate-specific transmembrane transporter activity2.43E-03
61GO:0042802: identical protein binding2.73E-03
62GO:0051011: microtubule minus-end binding2.93E-03
63GO:0004462: lactoylglutathione lyase activity3.63E-03
64GO:0042578: phosphoric ester hydrolase activity3.63E-03
65GO:2001070: starch binding3.63E-03
66GO:0004605: phosphatidate cytidylyltransferase activity3.63E-03
67GO:0080030: methyl indole-3-acetate esterase activity3.63E-03
68GO:0004332: fructose-bisphosphate aldolase activity3.63E-03
69GO:0004556: alpha-amylase activity3.63E-03
70GO:0003723: RNA binding3.85E-03
71GO:0008195: phosphatidate phosphatase activity4.37E-03
72GO:0015631: tubulin binding4.37E-03
73GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.37E-03
74GO:0016597: amino acid binding5.63E-03
75GO:0043022: ribosome binding5.99E-03
76GO:0008138: protein tyrosine/serine/threonine phosphatase activity7.79E-03
77GO:0003747: translation release factor activity7.79E-03
78GO:0003993: acid phosphatase activity1.03E-02
79GO:0005089: Rho guanyl-nucleotide exchange factor activity1.08E-02
80GO:0000049: tRNA binding1.19E-02
81GO:0016491: oxidoreductase activity1.24E-02
82GO:0000175: 3'-5'-exoribonuclease activity1.30E-02
83GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.42E-02
84GO:0016788: hydrolase activity, acting on ester bonds1.65E-02
85GO:0031409: pigment binding1.66E-02
86GO:0003714: transcription corepressor activity1.79E-02
87GO:0003777: microtubule motor activity1.91E-02
88GO:0043424: protein histidine kinase binding1.92E-02
89GO:0005345: purine nucleobase transmembrane transporter activity1.92E-02
90GO:0004176: ATP-dependent peptidase activity2.05E-02
91GO:0008233: peptidase activity2.07E-02
92GO:0003727: single-stranded RNA binding2.47E-02
93GO:0004812: aminoacyl-tRNA ligase activity2.62E-02
94GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.92E-02
95GO:0048038: quinone binding3.39E-02
96GO:0003924: GTPase activity3.44E-02
97GO:0004519: endonuclease activity3.81E-02
98GO:0005200: structural constituent of cytoskeleton4.05E-02
99GO:0005525: GTP binding4.53E-02
100GO:0003743: translation initiation factor activity4.94E-02
RankGO TermAdjusted P value
1GO:0010368: chloroplast isoamylase complex0.00E+00
2GO:0009349: riboflavin synthase complex0.00E+00
3GO:0042597: periplasmic space0.00E+00
4GO:0009507: chloroplast8.20E-56
5GO:0009535: chloroplast thylakoid membrane4.19E-22
6GO:0009570: chloroplast stroma7.50E-17
7GO:0009543: chloroplast thylakoid lumen3.59E-13
8GO:0009941: chloroplast envelope1.96E-10
9GO:0009579: thylakoid7.82E-09
10GO:0009534: chloroplast thylakoid7.67E-07
11GO:0031977: thylakoid lumen1.40E-06
12GO:0042651: thylakoid membrane7.15E-06
13GO:0031969: chloroplast membrane2.57E-04
14GO:0009515: granal stacked thylakoid3.37E-04
15GO:0009523: photosystem II4.44E-04
16GO:0042644: chloroplast nucleoid5.29E-04
17GO:0055028: cortical microtubule7.29E-04
18GO:0008274: gamma-tubulin ring complex7.34E-04
19GO:0010287: plastoglobule1.07E-03
20GO:0005874: microtubule1.12E-03
21GO:0030095: chloroplast photosystem II1.22E-03
22GO:0000923: equatorial microtubule organizing center1.71E-03
23GO:0042646: plastid nucleoid1.71E-03
24GO:0009654: photosystem II oxygen evolving complex1.86E-03
25GO:0030286: dynein complex2.30E-03
26GO:0009526: plastid envelope2.30E-03
27GO:0055035: plastid thylakoid membrane2.93E-03
28GO:0072686: mitotic spindle2.93E-03
29GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.63E-03
30GO:0019898: extrinsic component of membrane3.85E-03
31GO:0010005: cortical microtubule, transverse to long axis4.37E-03
32GO:0009533: chloroplast stromal thylakoid5.15E-03
33GO:0030529: intracellular ribonucleoprotein complex5.96E-03
34GO:0009538: photosystem I reaction center5.99E-03
35GO:0000922: spindle pole7.79E-03
36GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.79E-03
37GO:0016324: apical plasma membrane9.76E-03
38GO:0012511: monolayer-surrounded lipid storage body1.08E-02
39GO:0090404: pollen tube tip1.08E-02
40GO:0032040: small-subunit processome1.19E-02
41GO:0005938: cell cortex1.30E-02
42GO:0009574: preprophase band1.30E-02
43GO:0009508: plastid chromosome1.30E-02
44GO:0030076: light-harvesting complex1.54E-02
45GO:0005875: microtubule associated complex1.66E-02
46GO:0009532: plastid stroma2.05E-02
47GO:0005840: ribosome2.36E-02
48GO:0009706: chloroplast inner membrane2.46E-02
49GO:0005871: kinesin complex2.62E-02
50GO:0009522: photosystem I3.07E-02
51GO:0005778: peroxisomal membrane4.05E-02
52GO:0010319: stromule4.05E-02
53GO:0009295: nucleoid4.05E-02
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Gene type



Gene DE type