Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G63900

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046292: formaldehyde metabolic process0.00E+00
2GO:0009583: detection of light stimulus0.00E+00
3GO:0046294: formaldehyde catabolic process0.00E+00
4GO:0045747: positive regulation of Notch signaling pathway0.00E+00
5GO:0071000: response to magnetism0.00E+00
6GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine0.00E+00
7GO:0032928: regulation of superoxide anion generation0.00E+00
8GO:0006069: ethanol oxidation0.00E+00
9GO:0010117: photoprotection1.98E-06
10GO:0046283: anthocyanin-containing compound metabolic process1.98E-06
11GO:0072387: flavin adenine dinucleotide metabolic process3.00E-05
12GO:0071266: 'de novo' L-methionine biosynthetic process3.00E-05
13GO:0019346: transsulfuration3.00E-05
14GO:0019343: cysteine biosynthetic process via cystathionine3.00E-05
15GO:0016122: xanthophyll metabolic process7.58E-05
16GO:0010343: singlet oxygen-mediated programmed cell death7.58E-05
17GO:1901529: positive regulation of anion channel activity7.58E-05
18GO:0010617: circadian regulation of calcium ion oscillation7.58E-05
19GO:0099402: plant organ development7.58E-05
20GO:0010351: lithium ion transport1.32E-04
21GO:1902448: positive regulation of shade avoidance1.32E-04
22GO:0006013: mannose metabolic process1.32E-04
23GO:1901672: positive regulation of systemic acquired resistance1.32E-04
24GO:0071492: cellular response to UV-A1.32E-04
25GO:0006696: ergosterol biosynthetic process1.32E-04
26GO:0009399: nitrogen fixation1.97E-04
27GO:0009963: positive regulation of flavonoid biosynthetic process1.97E-04
28GO:0009647: skotomorphogenesis1.97E-04
29GO:1901332: negative regulation of lateral root development1.97E-04
30GO:0006542: glutamine biosynthetic process2.67E-04
31GO:0071486: cellular response to high light intensity2.67E-04
32GO:0009765: photosynthesis, light harvesting2.67E-04
33GO:0006221: pyrimidine nucleotide biosynthetic process2.67E-04
34GO:0009649: entrainment of circadian clock2.67E-04
35GO:1902347: response to strigolactone2.67E-04
36GO:0034613: cellular protein localization2.67E-04
37GO:0009229: thiamine diphosphate biosynthetic process3.42E-04
38GO:0098719: sodium ion import across plasma membrane3.42E-04
39GO:0010304: PSII associated light-harvesting complex II catabolic process4.20E-04
40GO:1901371: regulation of leaf morphogenesis4.20E-04
41GO:0009228: thiamine biosynthetic process4.20E-04
42GO:0060918: auxin transport4.20E-04
43GO:0010310: regulation of hydrogen peroxide metabolic process5.02E-04
44GO:0010244: response to low fluence blue light stimulus by blue low-fluence system5.02E-04
45GO:0009640: photomorphogenesis5.12E-04
46GO:0051510: regulation of unidimensional cell growth5.88E-04
47GO:0009880: embryonic pattern specification7.68E-04
48GO:0098656: anion transmembrane transport8.63E-04
49GO:0051453: regulation of intracellular pH9.61E-04
50GO:1900426: positive regulation of defense response to bacterium9.61E-04
51GO:0009638: phototropism9.61E-04
52GO:0009688: abscisic acid biosynthetic process1.06E-03
53GO:0009641: shade avoidance1.06E-03
54GO:0010075: regulation of meristem growth1.38E-03
55GO:0009785: blue light signaling pathway1.38E-03
56GO:2000377: regulation of reactive oxygen species metabolic process1.86E-03
57GO:0006487: protein N-linked glycosylation1.86E-03
58GO:0016117: carotenoid biosynthetic process2.66E-03
59GO:0010051: xylem and phloem pattern formation2.80E-03
60GO:0010118: stomatal movement2.80E-03
61GO:0006814: sodium ion transport3.09E-03
62GO:0042752: regulation of circadian rhythm3.09E-03
63GO:0009646: response to absence of light3.09E-03
64GO:0010286: heat acclimation4.03E-03
65GO:0071805: potassium ion transmembrane transport4.03E-03
66GO:0042128: nitrate assimilation4.70E-03
67GO:0048573: photoperiodism, flowering4.88E-03
68GO:0008219: cell death5.23E-03
69GO:0018298: protein-chromophore linkage5.23E-03
70GO:0010218: response to far red light5.60E-03
71GO:0010043: response to zinc ion5.78E-03
72GO:0010119: regulation of stomatal movement5.78E-03
73GO:0009637: response to blue light6.16E-03
74GO:0010114: response to red light7.34E-03
75GO:0009644: response to high light intensity7.75E-03
76GO:0009611: response to wounding8.09E-03
77GO:0009585: red, far-red light phototransduction9.03E-03
78GO:0010224: response to UV-B9.25E-03
79GO:0048316: seed development1.04E-02
80GO:0007623: circadian rhythm1.70E-02
81GO:0007049: cell cycle2.51E-02
82GO:0046686: response to cadmium ion2.51E-02
83GO:0046777: protein autophosphorylation2.84E-02
84GO:0045892: negative regulation of transcription, DNA-templated3.11E-02
85GO:0016042: lipid catabolic process3.50E-02
86GO:0006281: DNA repair3.58E-02
87GO:0006629: lipid metabolic process3.58E-02
88GO:0009408: response to heat3.58E-02
89GO:0048364: root development3.69E-02
90GO:0009734: auxin-activated signaling pathway4.56E-02
RankGO TermAdjusted P value
1GO:0080007: S-nitrosoglutathione reductase activity0.00E+00
2GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
3GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity0.00E+00
4GO:0046905: phytoene synthase activity0.00E+00
5GO:0004789: thiamine-phosphate diphosphorylase activity0.00E+00
6GO:0008902: hydroxymethylpyrimidine kinase activity0.00E+00
7GO:0018738: S-formylglutathione hydrolase activity0.00E+00
8GO:0008972: phosphomethylpyrimidine kinase activity0.00E+00
9GO:0004123: cystathionine gamma-lyase activity3.00E-05
10GO:0004121: cystathionine beta-lyase activity3.00E-05
11GO:0051996: squalene synthase activity3.00E-05
12GO:0015929: hexosaminidase activity7.58E-05
13GO:0004563: beta-N-acetylhexosaminidase activity7.58E-05
14GO:0004046: aminoacylase activity7.58E-05
15GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.58E-05
16GO:0004848: ureidoglycolate hydrolase activity1.32E-04
17GO:0003962: cystathionine gamma-synthase activity1.32E-04
18GO:0009882: blue light photoreceptor activity1.97E-04
19GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.97E-04
20GO:0004356: glutamate-ammonia ligase activity3.42E-04
21GO:0015081: sodium ion transmembrane transporter activity4.20E-04
22GO:0004559: alpha-mannosidase activity5.02E-04
23GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity8.63E-04
24GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors8.63E-04
25GO:0071949: FAD binding8.63E-04
26GO:0004386: helicase activity1.04E-03
27GO:0015386: potassium:proton antiporter activity1.16E-03
28GO:0004022: alcohol dehydrogenase (NAD) activity1.38E-03
29GO:0005315: inorganic phosphate transmembrane transporter activity1.38E-03
30GO:0042802: identical protein binding2.03E-03
31GO:0004176: ATP-dependent peptidase activity2.11E-03
32GO:0008514: organic anion transmembrane transporter activity2.52E-03
33GO:0015385: sodium:proton antiporter activity3.71E-03
34GO:0008237: metallopeptidase activity4.03E-03
35GO:0016168: chlorophyll binding4.53E-03
36GO:0004806: triglyceride lipase activity4.88E-03
37GO:0004222: metalloendopeptidase activity5.60E-03
38GO:0030170: pyridoxal phosphate binding1.46E-02
39GO:0015144: carbohydrate transmembrane transporter activity1.54E-02
40GO:0005351: sugar:proton symporter activity1.68E-02
41GO:0008270: zinc ion binding1.81E-02
42GO:0016788: hydrolase activity, acting on ester bonds2.36E-02
43GO:0052689: carboxylic ester hydrolase activity2.91E-02
44GO:0042803: protein homodimerization activity3.18E-02
45GO:0046872: metal ion binding3.36E-02
46GO:0016787: hydrolase activity3.45E-02
47GO:0005515: protein binding3.98E-02
48GO:0016887: ATPase activity4.88E-02
RankGO TermAdjusted P value
1GO:0016604: nuclear body1.72E-05
2GO:0000152: nuclear ubiquitin ligase complex3.00E-05
3GO:0016605: PML body1.32E-04
4GO:0009517: PSII associated light-harvesting complex II2.67E-04
5GO:0031969: chloroplast membrane3.29E-04
6GO:0005773: vacuole1.19E-03
7GO:0005875: microtubule associated complex1.73E-03
8GO:0009523: photosystem II3.24E-03
9GO:0032580: Golgi cisterna membrane3.87E-03
10GO:0009507: chloroplast9.71E-03
11GO:0010008: endosome membrane1.04E-02
12GO:0016607: nuclear speck1.04E-02
13GO:0005737: cytoplasm1.16E-02
14GO:0010287: plastoglobule1.31E-02
15GO:0005768: endosome1.45E-02
16GO:0005615: extracellular space1.85E-02
17GO:0009941: chloroplast envelope1.89E-02
18GO:0009536: plastid1.97E-02
19GO:0009505: plant-type cell wall2.02E-02
20GO:0080008: Cul4-RING E3 ubiquitin ligase complex2.48E-02
21GO:0009570: chloroplast stroma2.87E-02
22GO:0005829: cytosol2.88E-02
23GO:0005743: mitochondrial inner membrane3.40E-02
24GO:0009535: chloroplast thylakoid membrane3.60E-02
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Gene type



Gene DE type