co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G63800

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
2	GO:0042821: pyridoxal biosynthetic process	0.00E+00
3	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
4	GO:0042820: vitamin B6 catabolic process	0.00E+00
5	GO:1901965: endoplasmic reticulum to chloroplast transport	0.00E+00
6	GO:0008298: intracellular mRNA localization	0.00E+00
7	GO:0019685: photosynthesis, dark reaction	0.00E+00
8	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
9	GO:0098586: cellular response to virus	0.00E+00
10	GO:0080005: photosystem stoichiometry adjustment	4.28E-06
11	GO:0000256: allantoin catabolic process	4.28E-06
12	GO:0010136: ureide catabolic process	1.52E-05
13	GO:0006145: purine nucleobase catabolic process	3.40E-05
14	GO:2001141: regulation of RNA biosynthetic process	3.40E-05
15	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.40E-05
16	GO:0009767: photosynthetic electron transport chain	5.74E-05
17	GO:0018298: protein-chromophore linkage	1.01E-04
18	GO:0009658: chloroplast organization	1.14E-04
19	GO:0010190: cytochrome b6f complex assembly	1.39E-04
20	GO:0009643: photosynthetic acclimation	1.39E-04
21	GO:0009644: response to high light intensity	2.72E-04
22	GO:0009443: pyridoxal 5'-phosphate salvage	3.07E-04
23	GO:0018002: N-terminal peptidyl-glutamic acid acetylation	3.07E-04
24	GO:0031426: polycistronic mRNA processing	3.07E-04
25	GO:0033388: putrescine biosynthetic process from arginine	3.07E-04
26	GO:0071277: cellular response to calcium ion	3.07E-04
27	GO:1904966: positive regulation of vitamin E biosynthetic process	3.07E-04
28	GO:0006475: internal protein amino acid acetylation	3.07E-04
29	GO:1990052: ER to chloroplast lipid transport	3.07E-04
30	GO:0071806: protein transmembrane transport	3.07E-04
31	GO:1904964: positive regulation of phytol biosynthetic process	3.07E-04
32	GO:0006474: N-terminal protein amino acid acetylation	3.07E-04
33	GO:0017198: N-terminal peptidyl-serine acetylation	3.07E-04
34	GO:0042371: vitamin K biosynthetic process	3.07E-04
35	GO:0071461: cellular response to redox state	3.07E-04
36	GO:0006436: tryptophanyl-tRNA aminoacylation	3.07E-04
37	GO:0010362: negative regulation of anion channel activity by blue light	3.07E-04
38	GO:0048564: photosystem I assembly	3.13E-04
39	GO:0009657: plastid organization	3.84E-04
40	GO:0071482: cellular response to light stimulus	3.84E-04
41	GO:1900426: positive regulation of defense response to bacterium	5.47E-04
42	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.71E-04
43	GO:0042548: regulation of photosynthesis, light reaction	6.71E-04
44	GO:0048314: embryo sac morphogenesis	6.71E-04
45	GO:0034755: iron ion transmembrane transport	6.71E-04
46	GO:0006435: threonyl-tRNA aminoacylation	6.71E-04
47	GO:0030187: melatonin biosynthetic process	6.71E-04
48	GO:0009446: putrescine biosynthetic process	6.71E-04
49	GO:0080185: effector dependent induction by symbiont of host immune response	6.71E-04
50	GO:0046741: transport of virus in host, tissue to tissue	6.71E-04
51	GO:0006352: DNA-templated transcription, initiation	7.36E-04
52	GO:0009405: pathogenesis	1.09E-03
53	GO:0006954: inflammatory response	1.09E-03
54	GO:0006013: mannose metabolic process	1.09E-03
55	GO:0002230: positive regulation of defense response to virus by host	1.09E-03
56	GO:1901672: positive regulation of systemic acquired resistance	1.09E-03
57	GO:0007568: aging	1.09E-03
58	GO:0015979: photosynthesis	1.17E-03
59	GO:0090307: mitotic spindle assembly	1.56E-03
60	GO:0051016: barbed-end actin filament capping	1.56E-03
61	GO:0046739: transport of virus in multicellular host	1.56E-03
62	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	1.56E-03
63	GO:0050482: arachidonic acid secretion	1.56E-03
64	GO:0043572: plastid fission	1.56E-03
65	GO:0071484: cellular response to light intensity	1.56E-03
66	GO:0010239: chloroplast mRNA processing	1.56E-03
67	GO:0007017: microtubule-based process	1.62E-03
68	GO:0031122: cytoplasmic microtubule organization	2.09E-03
69	GO:0006021: inositol biosynthetic process	2.09E-03
70	GO:0009902: chloroplast relocation	2.09E-03
71	GO:0042274: ribosomal small subunit biogenesis	2.09E-03
72	GO:0031935: regulation of chromatin silencing	2.09E-03
73	GO:0009765: photosynthesis, light harvesting	2.09E-03
74	GO:0034052: positive regulation of plant-type hypersensitive response	2.67E-03
75	GO:0016120: carotene biosynthetic process	2.67E-03
76	GO:0010117: photoprotection	2.67E-03
77	GO:0045038: protein import into chloroplast thylakoid membrane	2.67E-03
78	GO:0035434: copper ion transmembrane transport	2.67E-03
79	GO:0006282: regulation of DNA repair	2.67E-03
80	GO:0016123: xanthophyll biosynthetic process	2.67E-03
81	GO:0055114: oxidation-reduction process	3.04E-03
82	GO:0000741: karyogamy	3.30E-03
83	GO:0046855: inositol phosphate dephosphorylation	3.30E-03
84	GO:0009791: post-embryonic development	3.35E-03
85	GO:0010189: vitamin E biosynthetic process	3.97E-03
86	GO:0009645: response to low light intensity stimulus	4.68E-03
87	GO:0010038: response to metal ion	4.68E-03
88	GO:0048528: post-embryonic root development	4.68E-03
89	GO:1900056: negative regulation of leaf senescence	4.68E-03
90	GO:0009642: response to light intensity	5.44E-03
91	GO:0030091: protein repair	5.44E-03
92	GO:0006605: protein targeting	5.44E-03
93	GO:0009704: de-etiolation	5.44E-03
94	GO:0006644: phospholipid metabolic process	5.44E-03
95	GO:0009816: defense response to bacterium, incompatible interaction	5.48E-03
96	GO:0015995: chlorophyll biosynthetic process	6.11E-03
97	GO:0032544: plastid translation	6.23E-03
98	GO:0032259: methylation	7.00E-03
99	GO:0009821: alkaloid biosynthetic process	7.07E-03
100	GO:0090305: nucleic acid phosphodiester bond hydrolysis	7.07E-03
101	GO:0048507: meristem development	7.07E-03
102	GO:0090333: regulation of stomatal closure	7.07E-03
103	GO:0000373: Group II intron splicing	7.07E-03
104	GO:0007623: circadian rhythm	7.73E-03
105	GO:0010380: regulation of chlorophyll biosynthetic process	7.94E-03
106	GO:0009638: phototropism	7.94E-03
107	GO:0009098: leucine biosynthetic process	7.94E-03
108	GO:0009853: photorespiration	8.59E-03
109	GO:0045036: protein targeting to chloroplast	8.84E-03
110	GO:0006259: DNA metabolic process	8.84E-03
111	GO:0009773: photosynthetic electron transport in photosystem I	9.79E-03
112	GO:0006265: DNA topological change	9.79E-03
113	GO:0006415: translational termination	9.79E-03
114	GO:0006879: cellular iron ion homeostasis	9.79E-03
115	GO:0009793: embryo development ending in seed dormancy	1.06E-02
116	GO:0006790: sulfur compound metabolic process	1.08E-02
117	GO:0006810: transport	1.17E-02
118	GO:0006807: nitrogen compound metabolic process	1.18E-02
119	GO:0009725: response to hormone	1.18E-02
120	GO:0010020: chloroplast fission	1.28E-02
121	GO:0010207: photosystem II assembly	1.28E-02
122	GO:0019853: L-ascorbic acid biosynthetic process	1.39E-02
123	GO:0090351: seedling development	1.39E-02
124	GO:0046854: phosphatidylinositol phosphorylation	1.39E-02
125	GO:0006364: rRNA processing	1.50E-02
126	GO:0006833: water transport	1.50E-02
127	GO:0009863: salicylic acid mediated signaling pathway	1.62E-02
128	GO:0006418: tRNA aminoacylation for protein translation	1.74E-02
129	GO:0009768: photosynthesis, light harvesting in photosystem I	1.74E-02
130	GO:0006825: copper ion transport	1.74E-02
131	GO:0051302: regulation of cell division	1.74E-02
132	GO:0051321: meiotic cell cycle	1.86E-02
133	GO:0006366: transcription from RNA polymerase II promoter	1.86E-02
134	GO:0016998: cell wall macromolecule catabolic process	1.86E-02
135	GO:0016226: iron-sulfur cluster assembly	1.98E-02
136	GO:0080092: regulation of pollen tube growth	1.98E-02
137	GO:0009553: embryo sac development	2.08E-02
138	GO:0006396: RNA processing	2.20E-02
139	GO:0016117: carotenoid biosynthetic process	2.37E-02
140	GO:0042335: cuticle development	2.50E-02
141	GO:0034220: ion transmembrane transport	2.50E-02
142	GO:0010118: stomatal movement	2.50E-02
143	GO:0006606: protein import into nucleus	2.50E-02
144	GO:0055085: transmembrane transport	2.54E-02
145	GO:0006457: protein folding	2.61E-02
146	GO:0006662: glycerol ether metabolic process	2.64E-02
147	GO:0010197: polar nucleus fusion	2.64E-02
148	GO:0048868: pollen tube development	2.64E-02
149	GO:0007059: chromosome segregation	2.78E-02
150	GO:0008654: phospholipid biosynthetic process	2.92E-02
151	GO:0000302: response to reactive oxygen species	3.07E-02
152	GO:0010193: response to ozone	3.07E-02
153	GO:0031047: gene silencing by RNA	3.21E-02
154	GO:0016032: viral process	3.21E-02
155	GO:0019761: glucosinolate biosynthetic process	3.21E-02
156	GO:0007264: small GTPase mediated signal transduction	3.21E-02
157	GO:0006413: translational initiation	3.45E-02
158	GO:0006464: cellular protein modification process	3.52E-02
159	GO:0051607: defense response to virus	3.83E-02
160	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.15E-02
161	GO:0010468: regulation of gene expression	4.40E-02
162	GO:0006950: response to stress	4.48E-02
163	GO:0009817: defense response to fungus, incompatible interaction	4.81E-02
164	GO:0048481: plant ovule development	4.81E-02
165	GO:0000160: phosphorelay signal transduction system	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
2	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
3	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
4	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
5	GO:0010276: phytol kinase activity	0.00E+00
6	GO:0050126: N-carbamoylputrescine amidase activity	0.00E+00
7	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
8	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
9	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
10	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
11	GO:0008080: N-acetyltransferase activity	6.40E-07
12	GO:0048038: quinone binding	2.97E-05
13	GO:0001053: plastid sigma factor activity	6.10E-05
14	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	6.10E-05
15	GO:0016987: sigma factor activity	6.10E-05
16	GO:1990190: peptide-glutamate-N-acetyltransferase activity	3.07E-04
17	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.07E-04
18	GO:0004830: tryptophan-tRNA ligase activity	3.07E-04
19	GO:0030941: chloroplast targeting sequence binding	3.07E-04
20	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.07E-04
21	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	3.07E-04
22	GO:0035671: enone reductase activity	3.07E-04
23	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	3.07E-04
24	GO:0016491: oxidoreductase activity	3.07E-04
25	GO:1990189: peptide-serine-N-acetyltransferase activity	3.07E-04
26	GO:0008934: inositol monophosphate 1-phosphatase activity	6.71E-04
27	GO:0052833: inositol monophosphate 4-phosphatase activity	6.71E-04
28	GO:0004829: threonine-tRNA ligase activity	6.71E-04
29	GO:0003862: 3-isopropylmalate dehydrogenase activity	6.71E-04
30	GO:0052832: inositol monophosphate 3-phosphatase activity	6.71E-04
31	GO:0016168: chlorophyll binding	6.99E-04
32	GO:0032947: protein complex scaffold	1.09E-03
33	GO:0004848: ureidoglycolate hydrolase activity	1.09E-03
34	GO:0004148: dihydrolipoyl dehydrogenase activity	1.09E-03
35	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.09E-03
36	GO:0070402: NADPH binding	1.09E-03
37	GO:0004180: carboxypeptidase activity	1.09E-03
38	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.09E-03
39	GO:0048027: mRNA 5'-UTR binding	1.56E-03
40	GO:0004792: thiosulfate sulfurtransferase activity	1.56E-03
41	GO:0016149: translation release factor activity, codon specific	1.56E-03
42	GO:0016851: magnesium chelatase activity	1.56E-03
43	GO:0009882: blue light photoreceptor activity	1.56E-03
44	GO:0004176: ATP-dependent peptidase activity	1.78E-03
45	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.09E-03
46	GO:0043495: protein anchor	2.09E-03
47	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	2.09E-03
48	GO:0005319: lipid transporter activity	2.09E-03
49	GO:0051861: glycolipid binding	2.09E-03
50	GO:0008453: alanine-glyoxylate transaminase activity	2.09E-03
51	GO:0043015: gamma-tubulin binding	2.09E-03
52	GO:0022891: substrate-specific transmembrane transporter activity	2.12E-03
53	GO:0004623: phospholipase A2 activity	2.67E-03
54	GO:0051011: microtubule minus-end binding	2.67E-03
55	GO:0008168: methyltransferase activity	2.81E-03
56	GO:0010181: FMN binding	3.13E-03
57	GO:0000293: ferric-chelate reductase activity	3.30E-03
58	GO:0004605: phosphatidate cytidylyltransferase activity	3.30E-03
59	GO:0015631: tubulin binding	3.97E-03
60	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.97E-03
61	GO:0004559: alpha-mannosidase activity	3.97E-03
62	GO:0008237: metallopeptidase activity	4.62E-03
63	GO:0019899: enzyme binding	4.68E-03
64	GO:0004033: aldo-keto reductase (NADP) activity	5.44E-03
65	GO:0005375: copper ion transmembrane transporter activity	6.23E-03
66	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	6.23E-03
67	GO:0071949: FAD binding	7.07E-03
68	GO:0003747: translation release factor activity	7.07E-03
69	GO:0005381: iron ion transmembrane transporter activity	7.94E-03
70	GO:0045309: protein phosphorylated amino acid binding	7.94E-03
71	GO:0016844: strictosidine synthase activity	7.94E-03
72	GO:0009055: electron carrier activity	8.32E-03
73	GO:0005089: Rho guanyl-nucleotide exchange factor activity	9.79E-03
74	GO:0019904: protein domain specific binding	9.79E-03
75	GO:0042802: identical protein binding	1.05E-02
76	GO:0031072: heat shock protein binding	1.18E-02
77	GO:0000155: phosphorelay sensor kinase activity	1.18E-02
78	GO:0051537: 2 iron, 2 sulfur cluster binding	1.20E-02
79	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.50E-02
80	GO:0031409: pigment binding	1.50E-02
81	GO:0001046: core promoter sequence-specific DNA binding	1.62E-02
82	GO:0051536: iron-sulfur cluster binding	1.62E-02
83	GO:0005528: FK506 binding	1.62E-02
84	GO:0003777: microtubule motor activity	1.66E-02
85	GO:0016746: transferase activity, transferring acyl groups	2.20E-02
86	GO:0003727: single-stranded RNA binding	2.24E-02
87	GO:0047134: protein-disulfide reductase activity	2.37E-02
88	GO:0004812: aminoacyl-tRNA ligase activity	2.37E-02
89	GO:0019843: rRNA binding	2.68E-02
90	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.75E-02
91	GO:0004791: thioredoxin-disulfide reductase activity	2.78E-02
92	GO:0016853: isomerase activity	2.78E-02
93	GO:0004872: receptor activity	2.92E-02
94	GO:0004518: nuclease activity	3.21E-02
95	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.36E-02
96	GO:0008483: transaminase activity	3.67E-02
97	GO:0005200: structural constituent of cytoskeleton	3.67E-02
98	GO:0015250: water channel activity	3.98E-02
99	GO:0003743: translation initiation factor activity	4.31E-02
100	GO:0008236: serine-type peptidase activity	4.64E-02
101	GO:0005506: iron ion binding	4.87E-02
102	GO:0016887: ATPase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.85E-41
2	GO:0009535: chloroplast thylakoid membrane	1.71E-19
3	GO:0009570: chloroplast stroma	4.83E-06
4	GO:0009941: chloroplast envelope	1.32E-05
5	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.67E-05
6	GO:0030286: dynein complex	6.10E-05
7	GO:0009534: chloroplast thylakoid	1.31E-04
8	GO:0042651: thylakoid membrane	1.33E-04
9	GO:0009543: chloroplast thylakoid lumen	1.52E-04
10	GO:0031969: chloroplast membrane	1.88E-04
11	GO:0031977: thylakoid lumen	2.08E-04
12	GO:0031972: chloroplast intermembrane space	3.07E-04
13	GO:0009782: photosystem I antenna complex	3.07E-04
14	GO:0031415: NatA complex	6.71E-04
15	GO:0080085: signal recognition particle, chloroplast targeting	6.71E-04
16	GO:0008274: gamma-tubulin ring complex	6.71E-04
17	GO:0008290: F-actin capping protein complex	6.71E-04
18	GO:0009707: chloroplast outer membrane	9.09E-04
19	GO:0010007: magnesium chelatase complex	1.09E-03
20	GO:0009528: plastid inner membrane	1.09E-03
21	GO:0005875: microtubule associated complex	1.33E-03
22	GO:0000923: equatorial microtubule organizing center	1.56E-03
23	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.09E-03
24	GO:0009523: photosystem II	3.35E-03
25	GO:0009295: nucleoid	4.62E-03
26	GO:0031359: integral component of chloroplast outer membrane	4.68E-03
27	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.23E-03
28	GO:0009579: thylakoid	6.89E-03
29	GO:0042644: chloroplast nucleoid	7.07E-03
30	GO:0000922: spindle pole	7.07E-03
31	GO:0009536: plastid	8.25E-03
32	GO:0016324: apical plasma membrane	8.84E-03
33	GO:0009508: plastid chromosome	1.18E-02
34	GO:0030095: chloroplast photosystem II	1.28E-02
35	GO:0030076: light-harvesting complex	1.39E-02
36	GO:0031966: mitochondrial membrane	1.40E-02
37	GO:0045271: respiratory chain complex I	1.74E-02
38	GO:0009654: photosystem II oxygen evolving complex	1.74E-02
39	GO:0005747: mitochondrial respiratory chain complex I	1.83E-02
40	GO:0010287: plastoglobule	2.54E-02
41	GO:0005623: cell	2.75E-02
42	GO:0019898: extrinsic component of membrane	2.92E-02
43	GO:0005778: peroxisomal membrane	3.67E-02
44	GO:0010319: stromule	3.67E-02
45	GO:0005622: intracellular	4.14E-02