GO Enrichment Analysis of Co-expressed Genes with
AT1G63780
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 2 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 3 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 4 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 5 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 6 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 7 | GO:0051050: positive regulation of transport | 0.00E+00 |
| 8 | GO:0006364: rRNA processing | 7.40E-15 |
| 9 | GO:0006412: translation | 4.90E-08 |
| 10 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 7.51E-07 |
| 11 | GO:0010162: seed dormancy process | 3.23E-06 |
| 12 | GO:0042254: ribosome biogenesis | 3.45E-06 |
| 13 | GO:0042273: ribosomal large subunit biogenesis | 1.25E-05 |
| 14 | GO:0006407: rRNA export from nucleus | 1.22E-04 |
| 15 | GO:0031120: snRNA pseudouridine synthesis | 1.22E-04 |
| 16 | GO:0031118: rRNA pseudouridine synthesis | 1.22E-04 |
| 17 | GO:0000494: box C/D snoRNA 3'-end processing | 1.22E-04 |
| 18 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.22E-04 |
| 19 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.22E-04 |
| 20 | GO:0043985: histone H4-R3 methylation | 1.22E-04 |
| 21 | GO:1990258: histone glutamine methylation | 1.22E-04 |
| 22 | GO:0080009: mRNA methylation | 2.82E-04 |
| 23 | GO:0045041: protein import into mitochondrial intermembrane space | 2.82E-04 |
| 24 | GO:0034470: ncRNA processing | 2.82E-04 |
| 25 | GO:0009944: polarity specification of adaxial/abaxial axis | 4.18E-04 |
| 26 | GO:0051302: regulation of cell division | 4.61E-04 |
| 27 | GO:0045039: protein import into mitochondrial inner membrane | 4.65E-04 |
| 28 | GO:0007005: mitochondrion organization | 5.53E-04 |
| 29 | GO:0009294: DNA mediated transformation | 6.02E-04 |
| 30 | GO:0009561: megagametogenesis | 6.53E-04 |
| 31 | GO:0007276: gamete generation | 6.66E-04 |
| 32 | GO:0009855: determination of bilateral symmetry | 6.66E-04 |
| 33 | GO:0051131: chaperone-mediated protein complex assembly | 6.66E-04 |
| 34 | GO:0009553: embryo sac development | 7.14E-04 |
| 35 | GO:0010501: RNA secondary structure unwinding | 7.61E-04 |
| 36 | GO:0000460: maturation of 5.8S rRNA | 8.84E-04 |
| 37 | GO:0006479: protein methylation | 8.84E-04 |
| 38 | GO:1900864: mitochondrial RNA modification | 8.84E-04 |
| 39 | GO:0042274: ribosomal small subunit biogenesis | 8.84E-04 |
| 40 | GO:0000380: alternative mRNA splicing, via spliceosome | 1.12E-03 |
| 41 | GO:0010375: stomatal complex patterning | 1.12E-03 |
| 42 | GO:0031167: rRNA methylation | 1.12E-03 |
| 43 | GO:0000470: maturation of LSU-rRNA | 1.37E-03 |
| 44 | GO:0016554: cytidine to uridine editing | 1.37E-03 |
| 45 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.64E-03 |
| 46 | GO:0006458: 'de novo' protein folding | 1.64E-03 |
| 47 | GO:0042026: protein refolding | 1.64E-03 |
| 48 | GO:0010374: stomatal complex development | 1.92E-03 |
| 49 | GO:0080186: developmental vegetative growth | 1.92E-03 |
| 50 | GO:0000028: ribosomal small subunit assembly | 2.22E-03 |
| 51 | GO:0042255: ribosome assembly | 2.22E-03 |
| 52 | GO:0001558: regulation of cell growth | 2.54E-03 |
| 53 | GO:0001510: RNA methylation | 2.54E-03 |
| 54 | GO:0006261: DNA-dependent DNA replication | 2.54E-03 |
| 55 | GO:0000387: spliceosomal snRNP assembly | 3.21E-03 |
| 56 | GO:1900865: chloroplast RNA modification | 3.21E-03 |
| 57 | GO:0006457: protein folding | 3.56E-03 |
| 58 | GO:0030422: production of siRNA involved in RNA interference | 3.57E-03 |
| 59 | GO:0006626: protein targeting to mitochondrion | 4.71E-03 |
| 60 | GO:0016569: covalent chromatin modification | 5.37E-03 |
| 61 | GO:0010030: positive regulation of seed germination | 5.54E-03 |
| 62 | GO:0000027: ribosomal large subunit assembly | 6.42E-03 |
| 63 | GO:0061077: chaperone-mediated protein folding | 7.34E-03 |
| 64 | GO:0070417: cellular response to cold | 9.31E-03 |
| 65 | GO:0008033: tRNA processing | 9.83E-03 |
| 66 | GO:0000413: protein peptidyl-prolyl isomerization | 9.83E-03 |
| 67 | GO:0009451: RNA modification | 1.01E-02 |
| 68 | GO:0009735: response to cytokinin | 1.01E-02 |
| 69 | GO:0010197: polar nucleus fusion | 1.04E-02 |
| 70 | GO:0009960: endosperm development | 1.04E-02 |
| 71 | GO:0080156: mitochondrial mRNA modification | 1.20E-02 |
| 72 | GO:0046686: response to cadmium ion | 1.37E-02 |
| 73 | GO:0016049: cell growth | 1.82E-02 |
| 74 | GO:0006414: translational elongation | 1.87E-02 |
| 75 | GO:0048527: lateral root development | 2.09E-02 |
| 76 | GO:0000154: rRNA modification | 2.90E-02 |
| 77 | GO:0006417: regulation of translation | 3.55E-02 |
| 78 | GO:0006396: RNA processing | 4.33E-02 |
| 79 | GO:0000398: mRNA splicing, via spliceosome | 4.69E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 2 | GO:0003963: RNA-3'-phosphate cyclase activity | 0.00E+00 |
| 3 | GO:0003723: RNA binding | 1.91E-20 |
| 4 | GO:0003735: structural constituent of ribosome | 1.16E-10 |
| 5 | GO:0043021: ribonucleoprotein complex binding | 7.51E-07 |
| 6 | GO:0008026: ATP-dependent helicase activity | 4.96E-06 |
| 7 | GO:0000166: nucleotide binding | 8.95E-06 |
| 8 | GO:0004407: histone deacetylase activity | 1.50E-05 |
| 9 | GO:0030515: snoRNA binding | 5.92E-05 |
| 10 | GO:1990259: histone-glutamine methyltransferase activity | 1.22E-04 |
| 11 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.22E-04 |
| 12 | GO:0001055: RNA polymerase II activity | 1.44E-04 |
| 13 | GO:0001054: RNA polymerase I activity | 2.00E-04 |
| 14 | GO:0044183: protein binding involved in protein folding | 2.00E-04 |
| 15 | GO:0003746: translation elongation factor activity | 2.30E-04 |
| 16 | GO:0001056: RNA polymerase III activity | 2.32E-04 |
| 17 | GO:0009982: pseudouridine synthase activity | 2.65E-04 |
| 18 | GO:0008649: rRNA methyltransferase activity | 4.65E-04 |
| 19 | GO:0070181: small ribosomal subunit rRNA binding | 4.65E-04 |
| 20 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.76E-04 |
| 21 | GO:0019843: rRNA binding | 9.79E-04 |
| 22 | GO:0003689: DNA clamp loader activity | 1.12E-03 |
| 23 | GO:0004004: ATP-dependent RNA helicase activity | 1.67E-03 |
| 24 | GO:0008235: metalloexopeptidase activity | 1.92E-03 |
| 25 | GO:0050897: cobalt ion binding | 2.13E-03 |
| 26 | GO:0000049: tRNA binding | 4.32E-03 |
| 27 | GO:0051082: unfolded protein binding | 5.71E-03 |
| 28 | GO:0004527: exonuclease activity | 1.04E-02 |
| 29 | GO:0003729: mRNA binding | 1.28E-02 |
| 30 | GO:0008168: methyltransferase activity | 1.47E-02 |
| 31 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.82E-02 |
| 32 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.88E-02 |
| 33 | GO:0016787: hydrolase activity | 2.21E-02 |
| 34 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.30E-02 |
| 35 | GO:0003924: GTPase activity | 2.81E-02 |
| 36 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.98E-02 |
| 37 | GO:0005515: protein binding | 3.13E-02 |
| 38 | GO:0016887: ATPase activity | 4.33E-02 |
| 39 | GO:0005524: ATP binding | 4.73E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0036396: MIS complex | 0.00E+00 |
| 2 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 3 | GO:0005730: nucleolus | 2.30E-38 |
| 4 | GO:0032040: small-subunit processome | 4.10E-10 |
| 5 | GO:0005634: nucleus | 3.28E-07 |
| 6 | GO:0030687: preribosome, large subunit precursor | 5.44E-07 |
| 7 | GO:0070545: PeBoW complex | 7.51E-07 |
| 8 | GO:0005840: ribosome | 1.17E-06 |
| 9 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 4.27E-06 |
| 10 | GO:0022626: cytosolic ribosome | 7.78E-06 |
| 11 | GO:0015935: small ribosomal subunit | 2.08E-05 |
| 12 | GO:0031428: box C/D snoRNP complex | 3.11E-05 |
| 13 | GO:0022627: cytosolic small ribosomal subunit | 3.24E-05 |
| 14 | GO:0005834: heterotrimeric G-protein complex | 6.01E-05 |
| 15 | GO:0022625: cytosolic large ribosomal subunit | 8.26E-05 |
| 16 | GO:0005736: DNA-directed RNA polymerase I complex | 1.20E-04 |
| 17 | GO:0030686: 90S preribosome | 1.22E-04 |
| 18 | GO:0005666: DNA-directed RNA polymerase III complex | 1.44E-04 |
| 19 | GO:0005759: mitochondrial matrix | 1.69E-04 |
| 20 | GO:0000418: DNA-directed RNA polymerase IV complex | 1.71E-04 |
| 21 | GO:0005665: DNA-directed RNA polymerase II, core complex | 2.32E-04 |
| 22 | GO:0000419: DNA-directed RNA polymerase V complex | 3.77E-04 |
| 23 | GO:0031429: box H/ACA snoRNP complex | 6.66E-04 |
| 24 | GO:0005663: DNA replication factor C complex | 8.84E-04 |
| 25 | GO:0000178: exosome (RNase complex) | 1.12E-03 |
| 26 | GO:0030529: intracellular ribonucleoprotein complex | 1.42E-03 |
| 27 | GO:0005829: cytosol | 1.82E-03 |
| 28 | GO:0005618: cell wall | 1.89E-03 |
| 29 | GO:0015934: large ribosomal subunit | 2.13E-03 |
| 30 | GO:0034399: nuclear periphery | 2.22E-03 |
| 31 | GO:0005763: mitochondrial small ribosomal subunit | 2.87E-03 |
| 32 | GO:0015030: Cajal body | 3.21E-03 |
| 33 | GO:0005774: vacuolar membrane | 4.66E-03 |
| 34 | GO:0005747: mitochondrial respiratory chain complex I | 4.90E-03 |
| 35 | GO:0005758: mitochondrial intermembrane space | 6.42E-03 |
| 36 | GO:0005654: nucleoplasm | 6.95E-03 |
| 37 | GO:0009506: plasmodesma | 9.94E-03 |
| 38 | GO:0016592: mediator complex | 1.26E-02 |
| 39 | GO:0005773: vacuole | 3.05E-02 |
| 40 | GO:0005739: mitochondrion | 3.66E-02 |
| 41 | GO:0005681: spliceosomal complex | 3.72E-02 |
| 42 | GO:0016607: nuclear speck | 3.80E-02 |
| 43 | GO:0009543: chloroplast thylakoid lumen | 4.97E-02 |