co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G63460

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0001881: receptor recycling	0.00E+00
2	GO:0006592: ornithine biosynthetic process	0.00E+00
3	GO:0015746: citrate transport	0.00E+00
4	GO:0023052: signaling	0.00E+00
5	GO:0019428: allantoin biosynthetic process	0.00E+00
6	GO:0006721: terpenoid metabolic process	0.00E+00
7	GO:0006511: ubiquitin-dependent protein catabolic process	2.25E-16
8	GO:0051603: proteolysis involved in cellular protein catabolic process	7.00E-07
9	GO:0008333: endosome to lysosome transport	8.00E-06
10	GO:0043248: proteasome assembly	7.90E-05
11	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.30E-04
12	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	1.45E-04
13	GO:0015986: ATP synthesis coupled proton transport	1.69E-04
14	GO:0001560: regulation of cell growth by extracellular stimulus	2.16E-04
15	GO:0019628: urate catabolic process	2.16E-04
16	GO:0016487: farnesol metabolic process	2.16E-04
17	GO:0031468: nuclear envelope reassembly	2.16E-04
18	GO:0010265: SCF complex assembly	2.16E-04
19	GO:0006144: purine nucleobase metabolic process	2.16E-04
20	GO:0015798: myo-inositol transport	2.16E-04
21	GO:0009245: lipid A biosynthetic process	2.78E-04
22	GO:0046686: response to cadmium ion	4.30E-04
23	GO:0045901: positive regulation of translational elongation	4.81E-04
24	GO:0019222: regulation of metabolic process	4.81E-04
25	GO:0006452: translational frameshifting	4.81E-04
26	GO:0030010: establishment of cell polarity	4.81E-04
27	GO:0051788: response to misfolded protein	4.81E-04
28	GO:0045905: positive regulation of translational termination	4.81E-04
29	GO:0010043: response to zinc ion	5.77E-04
30	GO:0009853: photorespiration	6.48E-04
31	GO:0010498: proteasomal protein catabolic process	7.83E-04
32	GO:0045793: positive regulation of cell size	7.83E-04
33	GO:0006760: folic acid-containing compound metabolic process	7.83E-04
34	GO:0006487: protein N-linked glycosylation	9.02E-04
35	GO:0061077: chaperone-mediated protein folding	1.09E-03
36	GO:0032877: positive regulation of DNA endoreduplication	1.12E-03
37	GO:0046836: glycolipid transport	1.12E-03
38	GO:0006166: purine ribonucleoside salvage	1.12E-03
39	GO:0006107: oxaloacetate metabolic process	1.12E-03
40	GO:0009647: skotomorphogenesis	1.12E-03
41	GO:0009963: positive regulation of flavonoid biosynthetic process	1.12E-03
42	GO:0010255: glucose mediated signaling pathway	1.12E-03
43	GO:1901332: negative regulation of lateral root development	1.12E-03
44	GO:0006168: adenine salvage	1.12E-03
45	GO:0051289: protein homotetramerization	1.12E-03
46	GO:0001676: long-chain fatty acid metabolic process	1.12E-03
47	GO:0051781: positive regulation of cell division	1.48E-03
48	GO:0051365: cellular response to potassium ion starvation	1.48E-03
49	GO:0010363: regulation of plant-type hypersensitive response	1.48E-03
50	GO:0006221: pyrimidine nucleotide biosynthetic process	1.48E-03
51	GO:0032366: intracellular sterol transport	1.48E-03
52	GO:0044205: 'de novo' UMP biosynthetic process	1.48E-03
53	GO:0042147: retrograde transport, endosome to Golgi	1.51E-03
54	GO:0000413: protein peptidyl-prolyl isomerization	1.63E-03
55	GO:0044209: AMP salvage	1.89E-03
56	GO:0036065: fucosylation	1.89E-03
57	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.33E-03
58	GO:0030163: protein catabolic process	2.46E-03
59	GO:0006914: autophagy	2.62E-03
60	GO:0019509: L-methionine salvage from methylthioadenosine	2.80E-03
61	GO:1901001: negative regulation of response to salt stress	2.80E-03
62	GO:0009554: megasporogenesis	2.80E-03
63	GO:0010044: response to aluminum ion	3.30E-03
64	GO:0048528: post-embryonic root development	3.30E-03
65	GO:0006744: ubiquinone biosynthetic process	3.30E-03
66	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	3.30E-03
67	GO:0031540: regulation of anthocyanin biosynthetic process	3.82E-03
68	GO:0009850: auxin metabolic process	3.82E-03
69	GO:0009690: cytokinin metabolic process	3.82E-03
70	GO:0006506: GPI anchor biosynthetic process	3.82E-03
71	GO:0000028: ribosomal small subunit assembly	3.82E-03
72	GO:0022900: electron transport chain	4.38E-03
73	GO:0009880: embryonic pattern specification	4.38E-03
74	GO:0006526: arginine biosynthetic process	4.38E-03
75	GO:0009631: cold acclimation	4.69E-03
76	GO:0098656: anion transmembrane transport	4.95E-03
77	GO:0046685: response to arsenic-containing substance	4.95E-03
78	GO:0009821: alkaloid biosynthetic process	4.95E-03
79	GO:0006754: ATP biosynthetic process	4.95E-03
80	GO:0006099: tricarboxylic acid cycle	5.38E-03
81	GO:0042761: very long-chain fatty acid biosynthetic process	5.56E-03
82	GO:0010449: root meristem growth	5.56E-03
83	GO:0006631: fatty acid metabolic process	6.11E-03
84	GO:0006995: cellular response to nitrogen starvation	6.18E-03
85	GO:0000103: sulfate assimilation	6.18E-03
86	GO:0043069: negative regulation of programmed cell death	6.18E-03
87	GO:0009926: auxin polar transport	6.63E-03
88	GO:0009826: unidimensional cell growth	6.68E-03
89	GO:0048229: gametophyte development	6.84E-03
90	GO:0006820: anion transport	7.51E-03
91	GO:0050826: response to freezing	8.22E-03
92	GO:0006807: nitrogen compound metabolic process	8.22E-03
93	GO:0006108: malate metabolic process	8.22E-03
94	GO:0009934: regulation of meristem structural organization	8.94E-03
95	GO:0006486: protein glycosylation	8.94E-03
96	GO:0007034: vacuolar transport	8.94E-03
97	GO:0009736: cytokinin-activated signaling pathway	8.94E-03
98	GO:0010223: secondary shoot formation	8.94E-03
99	GO:0009969: xyloglucan biosynthetic process	9.69E-03
100	GO:0007030: Golgi organization	9.69E-03
101	GO:0071732: cellular response to nitric oxide	9.69E-03
102	GO:0006071: glycerol metabolic process	1.05E-02
103	GO:0009116: nucleoside metabolic process	1.12E-02
104	GO:0006406: mRNA export from nucleus	1.12E-02
105	GO:0019953: sexual reproduction	1.21E-02
106	GO:0008299: isoprenoid biosynthetic process	1.21E-02
107	GO:0009553: embryo sac development	1.24E-02
108	GO:0015992: proton transport	1.29E-02
109	GO:0010431: seed maturation	1.29E-02
110	GO:0019748: secondary metabolic process	1.37E-02
111	GO:0035428: hexose transmembrane transport	1.37E-02
112	GO:0030433: ubiquitin-dependent ERAD pathway	1.37E-02
113	GO:0006012: galactose metabolic process	1.46E-02
114	GO:0071369: cellular response to ethylene stimulus	1.46E-02
115	GO:0055114: oxidation-reduction process	1.51E-02
116	GO:0010089: xylem development	1.55E-02
117	GO:0048364: root development	1.60E-02
118	GO:0016117: carotenoid biosynthetic process	1.64E-02
119	GO:0015991: ATP hydrolysis coupled proton transport	1.74E-02
120	GO:0042631: cellular response to water deprivation	1.74E-02
121	GO:0034220: ion transmembrane transport	1.74E-02
122	GO:0010051: xylem and phloem pattern formation	1.74E-02
123	GO:0046323: glucose import	1.83E-02
124	GO:0006662: glycerol ether metabolic process	1.83E-02
125	GO:0009790: embryo development	1.87E-02
126	GO:0061025: membrane fusion	1.93E-02
127	GO:0006633: fatty acid biosynthetic process	2.01E-02
128	GO:0009556: microsporogenesis	2.02E-02
129	GO:0006623: protein targeting to vacuole	2.02E-02
130	GO:0048825: cotyledon development	2.02E-02
131	GO:0009651: response to salt stress	2.11E-02
132	GO:0010193: response to ozone	2.12E-02
133	GO:0010150: leaf senescence	2.21E-02
134	GO:0010228: vegetative to reproductive phase transition of meristem	2.32E-02
135	GO:0071281: cellular response to iron ion	2.33E-02
136	GO:0009734: auxin-activated signaling pathway	2.33E-02
137	GO:0042742: defense response to bacterium	2.36E-02
138	GO:0009828: plant-type cell wall loosening	2.44E-02
139	GO:0000910: cytokinesis	2.65E-02
140	GO:0016579: protein deubiquitination	2.65E-02
141	GO:0009615: response to virus	2.76E-02
142	GO:0009735: response to cytokinin	2.78E-02
143	GO:0009733: response to auxin	2.80E-02
144	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.87E-02
145	GO:0006888: ER to Golgi vesicle-mediated transport	3.10E-02
146	GO:0016049: cell growth	3.22E-02
147	GO:0009817: defense response to fungus, incompatible interaction	3.34E-02
148	GO:0009832: plant-type cell wall biogenesis	3.46E-02
149	GO:0010311: lateral root formation	3.46E-02
150	GO:0006499: N-terminal protein myristoylation	3.58E-02
151	GO:0048527: lateral root development	3.70E-02
152	GO:0000724: double-strand break repair via homologous recombination	3.82E-02
153	GO:0034599: cellular response to oxidative stress	4.07E-02
154	GO:0006457: protein folding	4.27E-02
155	GO:0016192: vesicle-mediated transport	4.45E-02
156	GO:0042542: response to hydrogen peroxide	4.59E-02
157	GO:0051707: response to other organism	4.73E-02
158	GO:0008283: cell proliferation	4.73E-02
159	GO:0000209: protein polyubiquitination	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity	0.00E+00
2	GO:0008752: FMN reductase activity	0.00E+00
3	GO:0051997: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity	0.00E+00
4	GO:0046522: S-methyl-5-thioribose kinase activity	0.00E+00
5	GO:0050152: omega-amidase activity	0.00E+00
6	GO:0052873: FMN reductase (NADPH) activity	0.00E+00
7	GO:0004151: dihydroorotase activity	0.00E+00
8	GO:0047886: farnesol dehydrogenase activity	0.00E+00
9	GO:0008777: acetylornithine deacetylase activity	0.00E+00
10	GO:0033971: hydroxyisourate hydrolase activity	0.00E+00
11	GO:0004298: threonine-type endopeptidase activity	1.64E-30
12	GO:0008233: peptidase activity	3.42E-18
13	GO:0004576: oligosaccharyl transferase activity	3.35E-05
14	GO:0050897: cobalt ion binding	5.15E-05
15	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	5.37E-05
16	GO:0031177: phosphopantetheine binding	7.90E-05
17	GO:0000035: acyl binding	1.10E-04
18	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.30E-04
19	GO:0008121: ubiquinol-cytochrome-c reductase activity	1.45E-04
20	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.52E-04
21	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	1.85E-04
22	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.06E-04
23	GO:0010179: IAA-Ala conjugate hydrolase activity	2.16E-04
24	GO:0015137: citrate transmembrane transporter activity	2.16E-04
25	GO:0019786: Atg8-specific protease activity	2.16E-04
26	GO:0004129: cytochrome-c oxidase activity	4.49E-04
27	GO:0050347: trans-octaprenyltranstransferase activity	4.81E-04
28	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	4.81E-04
29	GO:0019779: Atg8 activating enzyme activity	4.81E-04
30	GO:0019172: glyoxalase III activity	4.81E-04
31	GO:0005366: myo-inositol:proton symporter activity	4.81E-04
32	GO:0052692: raffinose alpha-galactosidase activity	7.83E-04
33	GO:0005047: signal recognition particle binding	7.83E-04
34	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	7.83E-04
35	GO:0004557: alpha-galactosidase activity	7.83E-04
36	GO:0005528: FK506 binding	9.02E-04
37	GO:0017089: glycolipid transporter activity	1.12E-03
38	GO:0003999: adenine phosphoribosyltransferase activity	1.12E-03
39	GO:0010178: IAA-amino acid conjugate hydrolase activity	1.12E-03
40	GO:0004659: prenyltransferase activity	1.48E-03
41	GO:0010011: auxin binding	1.48E-03
42	GO:0051861: glycolipid binding	1.48E-03
43	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.48E-03
44	GO:0019776: Atg8 ligase activity	1.48E-03
45	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.48E-03
46	GO:0004040: amidase activity	1.89E-03
47	GO:0051117: ATPase binding	2.33E-03
48	GO:0036402: proteasome-activating ATPase activity	2.33E-03
49	GO:0008237: metallopeptidase activity	2.78E-03
50	GO:0102391: decanoate--CoA ligase activity	2.80E-03
51	GO:0004602: glutathione peroxidase activity	2.80E-03
52	GO:0004467: long-chain fatty acid-CoA ligase activity	3.30E-03
53	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	3.30E-03
54	GO:0008143: poly(A) binding	3.30E-03
55	GO:0008320: protein transmembrane transporter activity	3.30E-03
56	GO:0015288: porin activity	3.82E-03
57	GO:0035064: methylated histone binding	3.82E-03
58	GO:0004034: aldose 1-epimerase activity	3.82E-03
59	GO:0043022: ribosome binding	3.82E-03
60	GO:0008308: voltage-gated anion channel activity	4.38E-03
61	GO:0008417: fucosyltransferase activity	4.95E-03
62	GO:0008889: glycerophosphodiester phosphodiesterase activity	4.95E-03
63	GO:0016844: strictosidine synthase activity	5.56E-03
64	GO:0045309: protein phosphorylated amino acid binding	5.56E-03
65	GO:0047617: acyl-CoA hydrolase activity	5.56E-03
66	GO:0051539: 4 iron, 4 sulfur cluster binding	5.86E-03
67	GO:0004161: dimethylallyltranstransferase activity	6.84E-03
68	GO:0019904: protein domain specific binding	6.84E-03
69	GO:0046961: proton-transporting ATPase activity, rotational mechanism	6.84E-03
70	GO:0008794: arsenate reductase (glutaredoxin) activity	6.84E-03
71	GO:0004089: carbonate dehydratase activity	8.22E-03
72	GO:0004175: endopeptidase activity	8.94E-03
73	GO:0008266: poly(U) RNA binding	8.94E-03
74	GO:0017025: TBP-class protein binding	9.69E-03
75	GO:0003712: transcription cofactor activity	9.69E-03
76	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.09E-02
77	GO:0043130: ubiquitin binding	1.12E-02
78	GO:0003714: transcription corepressor activity	1.12E-02
79	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.29E-02
80	GO:0004540: ribonuclease activity	1.29E-02
81	GO:0015035: protein disulfide oxidoreductase activity	1.31E-02
82	GO:0047134: protein-disulfide reductase activity	1.64E-02
83	GO:0004791: thioredoxin-disulfide reductase activity	1.93E-02
84	GO:0005355: glucose transmembrane transporter activity	1.93E-02
85	GO:0050662: coenzyme binding	1.93E-02
86	GO:0010181: FMN binding	1.93E-02
87	GO:0004872: receptor activity	2.02E-02
88	GO:0004843: thiol-dependent ubiquitin-specific protease activity	2.12E-02
89	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.33E-02
90	GO:0015250: water channel activity	2.76E-02
91	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.99E-02
92	GO:0004683: calmodulin-dependent protein kinase activity	3.10E-02
93	GO:0015238: drug transmembrane transporter activity	3.46E-02
94	GO:0016788: hydrolase activity, acting on ester bonds	3.49E-02
95	GO:0003746: translation elongation factor activity	3.95E-02
96	GO:0042393: histone binding	4.33E-02
97	GO:0004364: glutathione transferase activity	4.59E-02
98	GO:0004185: serine-type carboxypeptidase activity	4.73E-02
99	GO:0005507: copper ion binding	4.80E-02
100	GO:0043621: protein self-association	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	1.01E-31
2	GO:0005839: proteasome core complex	1.64E-30
3	GO:0019773: proteasome core complex, alpha-subunit complex	9.07E-18
4	GO:0005747: mitochondrial respiratory chain complex I	5.02E-11
5	GO:0005829: cytosol	6.82E-11
6	GO:0005753: mitochondrial proton-transporting ATP synthase complex	1.15E-08
7	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	1.79E-07
8	GO:0005773: vacuole	2.13E-07
9	GO:0005783: endoplasmic reticulum	1.24E-06
10	GO:0005774: vacuolar membrane	3.92E-06
11	GO:0005750: mitochondrial respiratory chain complex III	3.16E-05
12	GO:0008250: oligosaccharyltransferase complex	5.37E-05
13	GO:0045271: respiratory chain complex I	6.27E-05
14	GO:0005771: multivesicular body	7.90E-05
15	GO:0030904: retromer complex	7.90E-05
16	GO:0045273: respiratory chain complex II	1.85E-04
17	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	1.85E-04
18	GO:0000421: autophagosome membrane	1.85E-04
19	GO:0031234: extrinsic component of cytoplasmic side of plasma membrane	2.16E-04
20	GO:0019774: proteasome core complex, beta-subunit complex	2.16E-04
21	GO:0005739: mitochondrion	2.99E-04
22	GO:0005788: endoplasmic reticulum lumen	3.65E-04
23	GO:0008541: proteasome regulatory particle, lid subcomplex	4.49E-04
24	GO:0022626: cytosolic ribosome	4.51E-04
25	GO:0046861: glyoxysomal membrane	7.83E-04
26	GO:0070469: respiratory chain	9.92E-04
27	GO:0005775: vacuolar lumen	1.12E-03
28	GO:0033180: proton-transporting V-type ATPase, V1 domain	1.12E-03
29	GO:0009507: chloroplast	1.16E-03
30	GO:0031966: mitochondrial membrane	1.18E-03
31	GO:0031410: cytoplasmic vesicle	1.18E-03
32	GO:0005794: Golgi apparatus	1.22E-03
33	GO:0005776: autophagosome	1.48E-03
34	GO:0005746: mitochondrial respiratory chain	1.89E-03
35	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	2.33E-03
36	GO:0005777: peroxisome	2.60E-03
37	GO:0032580: Golgi cisterna membrane	2.62E-03
38	GO:0031597: cytosolic proteasome complex	2.80E-03
39	GO:0031595: nuclear proteasome complex	3.30E-03
40	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	3.30E-03
41	GO:0046930: pore complex	4.38E-03
42	GO:0009514: glyoxysome	4.38E-03
43	GO:0005763: mitochondrial small ribosomal subunit	4.95E-03
44	GO:0031090: organelle membrane	4.95E-03
45	GO:0008540: proteasome regulatory particle, base subcomplex	5.56E-03
46	GO:0031902: late endosome membrane	6.11E-03
47	GO:0005737: cytoplasm	7.74E-03
48	GO:0009536: plastid	1.00E-02
49	GO:0005769: early endosome	1.05E-02
50	GO:0016020: membrane	1.24E-02
51	GO:0005741: mitochondrial outer membrane	1.29E-02
52	GO:0005789: endoplasmic reticulum membrane	1.46E-02
53	GO:0005759: mitochondrial matrix	2.01E-02
54	GO:0015934: large ribosomal subunit	3.70E-02
55	GO:0005874: microtubule	4.09E-02
56	GO:0005819: spindle	4.20E-02
57	GO:0090406: pollen tube	4.73E-02