co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G63110

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009583: detection of light stimulus	0.00E+00
2	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
3	GO:0071000: response to magnetism	0.00E+00
4	GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine	0.00E+00
5	GO:0032928: regulation of superoxide anion generation	0.00E+00
6	GO:0009661: chromoplast organization	0.00E+00
7	GO:0019685: photosynthesis, dark reaction	0.00E+00
8	GO:0098586: cellular response to virus	0.00E+00
9	GO:0080005: photosystem stoichiometry adjustment	7.73E-07
10	GO:0010343: singlet oxygen-mediated programmed cell death	7.73E-07
11	GO:0071482: cellular response to light stimulus	1.29E-06
12	GO:0006013: mannose metabolic process	2.91E-06
13	GO:2001141: regulation of RNA biosynthetic process	6.84E-06
14	GO:0016120: carotene biosynthetic process	2.12E-05
15	GO:0010117: photoprotection	2.12E-05
16	GO:0010190: cytochrome b6f complex assembly	3.20E-05
17	GO:0009658: chloroplast organization	4.85E-05
18	GO:0019646: aerobic electron transport chain	1.23E-04
19	GO:0071266: 'de novo' L-methionine biosynthetic process	1.23E-04
20	GO:0019346: transsulfuration	1.23E-04
21	GO:0019343: cysteine biosynthetic process via cystathionine	1.23E-04
22	GO:0071806: protein transmembrane transport	1.23E-04
23	GO:0072387: flavin adenine dinucleotide metabolic process	1.23E-04
24	GO:0071461: cellular response to redox state	1.23E-04
25	GO:0010362: negative regulation of anion channel activity by blue light	1.23E-04
26	GO:0015995: chlorophyll biosynthetic process	1.47E-04
27	GO:0009638: phototropism	1.48E-04
28	GO:0018298: protein-chromophore linkage	1.70E-04
29	GO:0006352: DNA-templated transcription, initiation	2.05E-04
30	GO:0009767: photosynthetic electron transport chain	2.71E-04
31	GO:0046741: transport of virus in host, tissue to tissue	2.86E-04
32	GO:0034755: iron ion transmembrane transport	2.86E-04
33	GO:0048314: embryo sac morphogenesis	2.86E-04
34	GO:0010617: circadian regulation of calcium ion oscillation	2.86E-04
35	GO:0099402: plant organ development	2.86E-04
36	GO:0048209: regulation of vesicle targeting, to, from or within Golgi	2.86E-04
37	GO:1904143: positive regulation of carotenoid biosynthetic process	2.86E-04
38	GO:0016122: xanthophyll metabolic process	2.86E-04
39	GO:1901529: positive regulation of anion channel activity	2.86E-04
40	GO:0090351: seedling development	3.45E-04
41	GO:0009644: response to high light intensity	3.69E-04
42	GO:1901672: positive regulation of systemic acquired resistance	4.72E-04
43	GO:0009150: purine ribonucleotide metabolic process	4.72E-04
44	GO:0006696: ergosterol biosynthetic process	4.72E-04
45	GO:1902448: positive regulation of shade avoidance	4.72E-04
46	GO:0016226: iron-sulfur cluster assembly	5.65E-04
47	GO:0033014: tetrapyrrole biosynthetic process	6.76E-04
48	GO:1901332: negative regulation of lateral root development	6.76E-04
49	GO:0050482: arachidonic acid secretion	6.76E-04
50	GO:0043572: plastid fission	6.76E-04
51	GO:0016117: carotenoid biosynthetic process	7.21E-04
52	GO:0010118: stomatal movement	7.76E-04
53	GO:1902347: response to strigolactone	8.97E-04
54	GO:0009902: chloroplast relocation	8.97E-04
55	GO:0000304: response to singlet oxygen	1.13E-03
56	GO:0046283: anthocyanin-containing compound metabolic process	1.13E-03
57	GO:0045038: protein import into chloroplast thylakoid membrane	1.13E-03
58	GO:0035434: copper ion transmembrane transport	1.13E-03
59	GO:1901371: regulation of leaf morphogenesis	1.39E-03
60	GO:0060918: auxin transport	1.39E-03
61	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.39E-03
62	GO:0007623: circadian rhythm	1.50E-03
63	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.66E-03
64	GO:0042372: phylloquinone biosynthetic process	1.66E-03
65	GO:0010019: chloroplast-nucleus signaling pathway	1.66E-03
66	GO:0010310: regulation of hydrogen peroxide metabolic process	1.66E-03
67	GO:0051510: regulation of unidimensional cell growth	1.95E-03
68	GO:0010038: response to metal ion	1.95E-03
69	GO:1900056: negative regulation of leaf senescence	1.95E-03
70	GO:0001522: pseudouridine synthesis	2.26E-03
71	GO:0006605: protein targeting	2.26E-03
72	GO:0009704: de-etiolation	2.26E-03
73	GO:0050821: protein stabilization	2.26E-03
74	GO:0006644: phospholipid metabolic process	2.26E-03
75	GO:0048564: photosystem I assembly	2.26E-03
76	GO:0009637: response to blue light	2.38E-03
77	GO:0032544: plastid translation	2.58E-03
78	GO:0010380: regulation of chlorophyll biosynthetic process	3.26E-03
79	GO:1900426: positive regulation of defense response to bacterium	3.26E-03
80	GO:0006782: protoporphyrinogen IX biosynthetic process	3.62E-03
81	GO:0009688: abscisic acid biosynthetic process	3.62E-03
82	GO:0045036: protein targeting to chloroplast	3.62E-03
83	GO:0046777: protein autophosphorylation	3.72E-03
84	GO:0043085: positive regulation of catalytic activity	4.00E-03
85	GO:0006879: cellular iron ion homeostasis	4.00E-03
86	GO:0006790: sulfur compound metabolic process	4.39E-03
87	GO:0009785: blue light signaling pathway	4.79E-03
88	GO:0010075: regulation of meristem growth	4.79E-03
89	GO:0010020: chloroplast fission	5.20E-03
90	GO:0010207: photosystem II assembly	5.20E-03
91	GO:2000377: regulation of reactive oxygen species metabolic process	6.51E-03
92	GO:0007017: microtubule-based process	6.98E-03
93	GO:0006825: copper ion transport	6.98E-03
94	GO:0051302: regulation of cell division	6.98E-03
95	GO:0051321: meiotic cell cycle	7.45E-03
96	GO:0006817: phosphate ion transport	8.93E-03
97	GO:0009735: response to cytokinin	1.04E-02
98	GO:0006662: glycerol ether metabolic process	1.05E-02
99	GO:0042752: regulation of circadian rhythm	1.11E-02
100	GO:0009646: response to absence of light	1.11E-02
101	GO:0009791: post-embryonic development	1.16E-02
102	GO:0000302: response to reactive oxygen species	1.22E-02
103	GO:0006891: intra-Golgi vesicle-mediated transport	1.22E-02
104	GO:0030163: protein catabolic process	1.34E-02
105	GO:0055114: oxidation-reduction process	1.46E-02
106	GO:0010027: thylakoid membrane organization	1.58E-02
107	GO:0009816: defense response to bacterium, incompatible interaction	1.65E-02
108	GO:0006906: vesicle fusion	1.71E-02
109	GO:0006888: ER to Golgi vesicle-mediated transport	1.78E-02
110	GO:0006950: response to stress	1.78E-02
111	GO:0000160: phosphorelay signal transduction system	1.98E-02
112	GO:0006811: ion transport	2.05E-02
113	GO:0010218: response to far red light	2.05E-02
114	GO:0010043: response to zinc ion	2.12E-02
115	GO:0007568: aging	2.12E-02
116	GO:0009910: negative regulation of flower development	2.12E-02
117	GO:0000724: double-strand break repair via homologous recombination	2.19E-02
118	GO:0015979: photosynthesis	2.22E-02
119	GO:0009853: photorespiration	2.26E-02
120	GO:0034599: cellular response to oxidative stress	2.34E-02
121	GO:0009640: photomorphogenesis	2.71E-02
122	GO:0010114: response to red light	2.71E-02
123	GO:0031347: regulation of defense response	3.11E-02
124	GO:0006364: rRNA processing	3.35E-02
125	GO:0006417: regulation of translation	3.60E-02
126	GO:0006508: proteolysis	3.86E-02
127	GO:0009553: embryo sac development	4.22E-02

Rank	GO Term	Adjusted P value
1	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
2	GO:0046905: phytoene synthase activity	0.00E+00
3	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
4	GO:0045436: lycopene beta cyclase activity	0.00E+00
5	GO:0004848: ureidoglycolate hydrolase activity	2.91E-06
6	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	2.91E-06
7	GO:0009882: blue light photoreceptor activity	6.84E-06
8	GO:0001053: plastid sigma factor activity	1.29E-05
9	GO:0016987: sigma factor activity	1.29E-05
10	GO:0004559: alpha-mannosidase activity	4.51E-05
11	GO:0071949: FAD binding	1.22E-04
12	GO:0004121: cystathionine beta-lyase activity	1.23E-04
13	GO:0051996: squalene synthase activity	1.23E-04
14	GO:0030941: chloroplast targeting sequence binding	1.23E-04
15	GO:0004123: cystathionine gamma-lyase activity	1.23E-04
16	GO:0046906: tetrapyrrole binding	1.23E-04
17	GO:0009982: pseudouridine synthase activity	2.71E-04
18	GO:0004046: aminoacylase activity	2.86E-04
19	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	2.86E-04
20	GO:0004047: aminomethyltransferase activity	2.86E-04
21	GO:0004109: coproporphyrinogen oxidase activity	2.86E-04
22	GO:0032947: protein complex scaffold	4.72E-04
23	GO:0003962: cystathionine gamma-synthase activity	4.72E-04
24	GO:0004180: carboxypeptidase activity	4.72E-04
25	GO:0004176: ATP-dependent peptidase activity	5.17E-04
26	GO:0016851: magnesium chelatase activity	6.76E-04
27	GO:0047627: adenylylsulfatase activity	6.76E-04
28	GO:0016491: oxidoreductase activity	7.25E-04
29	GO:0008080: N-acetyltransferase activity	8.35E-04
30	GO:0051861: glycolipid binding	8.97E-04
31	GO:0048038: quinone binding	1.02E-03
32	GO:0004623: phospholipase A2 activity	1.13E-03
33	GO:0008237: metallopeptidase activity	1.30E-03
34	GO:0000293: ferric-chelate reductase activity	1.39E-03
35	GO:0019899: enzyme binding	1.95E-03
36	GO:0042802: identical protein binding	2.03E-03
37	GO:0004222: metalloendopeptidase activity	2.07E-03
38	GO:0005375: copper ion transmembrane transporter activity	2.58E-03
39	GO:0005381: iron ion transmembrane transporter activity	3.26E-03
40	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.11E-03
41	GO:0005315: inorganic phosphate transmembrane transporter activity	4.79E-03
42	GO:0031072: heat shock protein binding	4.79E-03
43	GO:0000155: phosphorelay sensor kinase activity	4.79E-03
44	GO:0051536: iron-sulfur cluster binding	6.51E-03
45	GO:0003954: NADH dehydrogenase activity	6.51E-03
46	GO:0022891: substrate-specific transmembrane transporter activity	8.43E-03
47	GO:0047134: protein-disulfide reductase activity	9.45E-03
48	GO:0016887: ATPase activity	9.76E-03
49	GO:0010181: FMN binding	1.11E-02
50	GO:0004791: thioredoxin-disulfide reductase activity	1.11E-02
51	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.34E-02
52	GO:0016168: chlorophyll binding	1.65E-02
53	GO:0008236: serine-type peptidase activity	1.85E-02
54	GO:0000149: SNARE binding	2.41E-02
55	GO:0005484: SNAP receptor activity	2.71E-02
56	GO:0005198: structural molecule activity	2.95E-02
57	GO:0015293: symporter activity	2.95E-02
58	GO:0003777: microtubule motor activity	3.60E-02
59	GO:0031625: ubiquitin protein ligase binding	3.60E-02
60	GO:0051082: unfolded protein binding	4.31E-02
61	GO:0016746: transferase activity, transferring acyl groups	4.40E-02
62	GO:0015035: protein disulfide oxidoreductase activity	4.40E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.95E-21
2	GO:0009535: chloroplast thylakoid membrane	2.18E-11
3	GO:0031969: chloroplast membrane	6.51E-06
4	GO:0031972: chloroplast intermembrane space	1.23E-04
5	GO:0009536: plastid	1.34E-04
6	GO:0009707: chloroplast outer membrane	1.70E-04
7	GO:0031304: intrinsic component of mitochondrial inner membrane	2.86E-04
8	GO:0080085: signal recognition particle, chloroplast targeting	2.86E-04
9	GO:0010007: magnesium chelatase complex	4.72E-04
10	GO:0005797: Golgi medial cisterna	4.72E-04
11	GO:0016605: PML body	4.72E-04
12	GO:0009528: plastid inner membrane	4.72E-04
13	GO:0009534: chloroplast thylakoid	7.20E-04
14	GO:0009517: PSII associated light-harvesting complex II	8.97E-04
15	GO:0030286: dynein complex	8.97E-04
16	GO:0009941: chloroplast envelope	9.11E-04
17	GO:0005801: cis-Golgi network	1.66E-03
18	GO:0031359: integral component of chloroplast outer membrane	1.95E-03
19	GO:0009570: chloroplast stroma	2.01E-03
20	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.58E-03
21	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.91E-03
22	GO:0016604: nuclear body	3.26E-03
23	GO:0005773: vacuole	3.75E-03
24	GO:0031966: mitochondrial membrane	3.83E-03
25	GO:0005875: microtubule associated complex	6.06E-03
26	GO:0010287: plastoglobule	6.91E-03
27	GO:0042651: thylakoid membrane	6.98E-03
28	GO:0045271: respiratory chain complex I	6.98E-03
29	GO:0009523: photosystem II	1.16E-02
30	GO:0016021: integral component of membrane	1.68E-02
31	GO:0031977: thylakoid lumen	2.56E-02
32	GO:0031201: SNARE complex	2.56E-02
33	GO:0005743: mitochondrial inner membrane	2.67E-02
34	GO:0009505: plant-type cell wall	3.73E-02
35	GO:0005747: mitochondrial respiratory chain complex I	3.86E-02
36	GO:0009706: chloroplast inner membrane	4.31E-02