co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G62780

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070125: mitochondrial translational elongation	0.00E+00
2	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
3	GO:2000505: regulation of energy homeostasis	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
6	GO:0061635: regulation of protein complex stability	0.00E+00
7	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
8	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
9	GO:0005996: monosaccharide metabolic process	0.00E+00
10	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
11	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
12	GO:0090042: tubulin deacetylation	0.00E+00
13	GO:0006114: glycerol biosynthetic process	0.00E+00
14	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
15	GO:0015979: photosynthesis	1.04E-15
16	GO:0010027: thylakoid membrane organization	1.57E-12
17	GO:0032544: plastid translation	8.34E-12
18	GO:0010196: nonphotochemical quenching	5.72E-08
19	GO:0015995: chlorophyll biosynthetic process	2.15E-07
20	GO:0009773: photosynthetic electron transport in photosystem I	9.00E-07
21	GO:0009658: chloroplast organization	1.56E-06
22	GO:0018026: peptidyl-lysine monomethylation	4.63E-06
23	GO:0006412: translation	7.66E-06
24	GO:0090391: granum assembly	1.64E-05
25	GO:0010206: photosystem II repair	1.84E-05
26	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.65E-05
27	GO:0006006: glucose metabolic process	6.28E-05
28	GO:0019464: glycine decarboxylation via glycine cleavage system	6.53E-05
29	GO:0006109: regulation of carbohydrate metabolic process	6.53E-05
30	GO:0006546: glycine catabolic process	6.53E-05
31	GO:0010207: photosystem II assembly	7.60E-05
32	GO:0019253: reductive pentose-phosphate cycle	7.60E-05
33	GO:0010236: plastoquinone biosynthetic process	1.03E-04
34	GO:0009409: response to cold	1.05E-04
35	GO:0018298: protein-chromophore linkage	1.12E-04
36	GO:0009768: photosynthesis, light harvesting in photosystem I	1.45E-04
37	GO:0061077: chaperone-mediated protein folding	1.66E-04
38	GO:0009793: embryo development ending in seed dormancy	1.76E-04
39	GO:0042371: vitamin K biosynthetic process	3.19E-04
40	GO:0043686: co-translational protein modification	3.19E-04
41	GO:0043007: maintenance of rDNA	3.19E-04
42	GO:1902458: positive regulation of stomatal opening	3.19E-04
43	GO:0034337: RNA folding	3.19E-04
44	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.19E-04
45	GO:0000476: maturation of 4.5S rRNA	3.19E-04
46	GO:0000967: rRNA 5'-end processing	3.19E-04
47	GO:0006438: valyl-tRNA aminoacylation	3.19E-04
48	GO:0000481: maturation of 5S rRNA	3.19E-04
49	GO:0009735: response to cytokinin	3.34E-04
50	GO:0009657: plastid organization	4.07E-04
51	GO:0006729: tetrahydrobiopterin biosynthetic process	6.97E-04
52	GO:1903426: regulation of reactive oxygen species biosynthetic process	6.97E-04
53	GO:0006568: tryptophan metabolic process	6.97E-04
54	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.97E-04
55	GO:0034470: ncRNA processing	6.97E-04
56	GO:0019388: galactose catabolic process	6.97E-04
57	GO:0097054: L-glutamate biosynthetic process	6.97E-04
58	GO:0019684: photosynthesis, light reaction	7.78E-04
59	GO:0043085: positive regulation of catalytic activity	7.78E-04
60	GO:0006415: translational termination	7.78E-04
61	GO:0016311: dephosphorylation	9.19E-04
62	GO:0006000: fructose metabolic process	1.13E-03
63	GO:0071492: cellular response to UV-A	1.13E-03
64	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.62E-03
65	GO:0006020: inositol metabolic process	1.62E-03
66	GO:0071484: cellular response to light intensity	1.62E-03
67	GO:0006537: glutamate biosynthetic process	1.62E-03
68	GO:0009590: detection of gravity	1.62E-03
69	GO:0006418: tRNA aminoacylation for protein translation	1.72E-03
70	GO:0019676: ammonia assimilation cycle	2.18E-03
71	GO:0015976: carbon utilization	2.18E-03
72	GO:0071486: cellular response to high light intensity	2.18E-03
73	GO:0045727: positive regulation of translation	2.18E-03
74	GO:0015994: chlorophyll metabolic process	2.18E-03
75	GO:0006021: inositol biosynthetic process	2.18E-03
76	GO:0016117: carotenoid biosynthetic process	2.65E-03
77	GO:0031365: N-terminal protein amino acid modification	2.78E-03
78	GO:0016123: xanthophyll biosynthetic process	2.78E-03
79	GO:0000304: response to singlet oxygen	2.78E-03
80	GO:0032543: mitochondrial translation	2.78E-03
81	GO:0045038: protein import into chloroplast thylakoid membrane	2.78E-03
82	GO:0006662: glycerol ether metabolic process	3.08E-03
83	GO:0006096: glycolytic process	3.28E-03
84	GO:0042254: ribosome biogenesis	3.35E-03
85	GO:0042549: photosystem II stabilization	3.43E-03
86	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.43E-03
87	GO:0042793: transcription from plastid promoter	3.43E-03
88	GO:0010190: cytochrome b6f complex assembly	3.43E-03
89	GO:0046855: inositol phosphate dephosphorylation	3.43E-03
90	GO:0009955: adaxial/abaxial pattern specification	4.13E-03
91	GO:0042372: phylloquinone biosynthetic process	4.13E-03
92	GO:0042026: protein refolding	4.13E-03
93	GO:0006458: 'de novo' protein folding	4.13E-03
94	GO:1901259: chloroplast rRNA processing	4.13E-03
95	GO:0030488: tRNA methylation	4.13E-03
96	GO:0010189: vitamin E biosynthetic process	4.13E-03
97	GO:0009772: photosynthetic electron transport in photosystem II	4.87E-03
98	GO:0009645: response to low light intensity stimulus	4.87E-03
99	GO:0009416: response to light stimulus	5.60E-03
100	GO:0000105: histidine biosynthetic process	5.66E-03
101	GO:0016559: peroxisome fission	5.66E-03
102	GO:0048564: photosystem I assembly	5.66E-03
103	GO:0005978: glycogen biosynthetic process	5.66E-03
104	GO:0009642: response to light intensity	5.66E-03
105	GO:0032508: DNA duplex unwinding	5.66E-03
106	GO:2000070: regulation of response to water deprivation	5.66E-03
107	GO:0017004: cytochrome complex assembly	6.49E-03
108	GO:0006002: fructose 6-phosphate metabolic process	6.49E-03
109	GO:0071482: cellular response to light stimulus	6.49E-03
110	GO:0015996: chlorophyll catabolic process	6.49E-03
111	GO:0007186: G-protein coupled receptor signaling pathway	6.49E-03
112	GO:0009790: embryo development	6.73E-03
113	GO:0009817: defense response to fungus, incompatible interaction	7.19E-03
114	GO:0009245: lipid A biosynthetic process	7.36E-03
115	GO:0006779: porphyrin-containing compound biosynthetic process	8.27E-03
116	GO:0009853: photorespiration	9.12E-03
117	GO:0031627: telomeric loop formation	9.22E-03
118	GO:0006782: protoporphyrinogen IX biosynthetic process	9.22E-03
119	GO:0034599: cellular response to oxidative stress	9.54E-03
120	GO:0009089: lysine biosynthetic process via diaminopimelate	1.02E-02
121	GO:0009073: aromatic amino acid family biosynthetic process	1.02E-02
122	GO:0000272: polysaccharide catabolic process	1.02E-02
123	GO:0018119: peptidyl-cysteine S-nitrosylation	1.02E-02
124	GO:0006790: sulfur compound metabolic process	1.12E-02
125	GO:0005983: starch catabolic process	1.12E-02
126	GO:0045037: protein import into chloroplast stroma	1.12E-02
127	GO:0009744: response to sucrose	1.18E-02
128	GO:0006094: gluconeogenesis	1.23E-02
129	GO:0009767: photosynthetic electron transport chain	1.23E-02
130	GO:0005986: sucrose biosynthetic process	1.23E-02
131	GO:0009644: response to high light intensity	1.28E-02
132	GO:0006810: transport	1.31E-02
133	GO:0009266: response to temperature stimulus	1.34E-02
134	GO:0010020: chloroplast fission	1.34E-02
135	GO:0046854: phosphatidylinositol phosphorylation	1.45E-02
136	GO:0005985: sucrose metabolic process	1.45E-02
137	GO:0000162: tryptophan biosynthetic process	1.57E-02
138	GO:0006636: unsaturated fatty acid biosynthetic process	1.57E-02
139	GO:0006364: rRNA processing	1.59E-02
140	GO:0016575: histone deacetylation	1.81E-02
141	GO:0043086: negative regulation of catalytic activity	1.88E-02
142	GO:0042742: defense response to bacterium	1.90E-02
143	GO:0048278: vesicle docking	1.94E-02
144	GO:0031408: oxylipin biosynthetic process	1.94E-02
145	GO:0009561: megagametogenesis	2.33E-02
146	GO:0006396: RNA processing	2.34E-02
147	GO:0045454: cell redox homeostasis	2.40E-02
148	GO:0042631: cellular response to water deprivation	2.61E-02
149	GO:0055114: oxidation-reduction process	2.61E-02
150	GO:0042335: cuticle development	2.61E-02
151	GO:0010182: sugar mediated signaling pathway	2.75E-02
152	GO:0006457: protein folding	2.85E-02
153	GO:0061025: membrane fusion	2.90E-02
154	GO:0032259: methylation	2.95E-02
155	GO:0019252: starch biosynthetic process	3.05E-02
156	GO:0071554: cell wall organization or biogenesis	3.20E-02
157	GO:0002229: defense response to oomycetes	3.20E-02
158	GO:0010583: response to cyclopentenone	3.35E-02
159	GO:0006633: fatty acid biosynthetic process	3.57E-02
160	GO:0007623: circadian rhythm	3.92E-02
161	GO:0009627: systemic acquired resistance	4.50E-02
162	GO:0006906: vesicle fusion	4.50E-02

Rank	GO Term	Adjusted P value
1	GO:0046408: chlorophyll synthetase activity	0.00E+00
2	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
3	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
4	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
7	GO:0051721: protein phosphatase 2A binding	0.00E+00
8	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
9	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
10	GO:0042903: tubulin deacetylase activity	0.00E+00
11	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
12	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
13	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
14	GO:0043014: alpha-tubulin binding	0.00E+00
15	GO:0004823: leucine-tRNA ligase activity	0.00E+00
16	GO:0019843: rRNA binding	2.23E-13
17	GO:0005528: FK506 binding	1.03E-07
18	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.28E-06
19	GO:0003735: structural constituent of ribosome	4.62E-06
20	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.63E-06
21	GO:0004375: glycine dehydrogenase (decarboxylating) activity	3.65E-05
22	GO:0016149: translation release factor activity, codon specific	3.65E-05
23	GO:0016279: protein-lysine N-methyltransferase activity	6.53E-05
24	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	6.53E-05
25	GO:0016168: chlorophyll binding	7.60E-05
26	GO:0031409: pigment binding	1.07E-04
27	GO:0016041: glutamate synthase (ferredoxin) activity	3.19E-04
28	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	3.19E-04
29	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	3.19E-04
30	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.19E-04
31	GO:0050308: sugar-phosphatase activity	3.19E-04
32	GO:0019203: carbohydrate phosphatase activity	3.19E-04
33	GO:0042586: peptide deformylase activity	3.19E-04
34	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	3.19E-04
35	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	3.19E-04
36	GO:0004832: valine-tRNA ligase activity	3.19E-04
37	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.19E-04
38	GO:0003747: translation release factor activity	4.90E-04
39	GO:0008047: enzyme activator activity	6.75E-04
40	GO:0010291: carotene beta-ring hydroxylase activity	6.97E-04
41	GO:0047746: chlorophyllase activity	6.97E-04
42	GO:0042389: omega-3 fatty acid desaturase activity	6.97E-04
43	GO:0010297: heteropolysaccharide binding	6.97E-04
44	GO:0004047: aminomethyltransferase activity	6.97E-04
45	GO:0052832: inositol monophosphate 3-phosphatase activity	6.97E-04
46	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.97E-04
47	GO:0008934: inositol monophosphate 1-phosphatase activity	6.97E-04
48	GO:0052833: inositol monophosphate 4-phosphatase activity	6.97E-04
49	GO:0004614: phosphoglucomutase activity	6.97E-04
50	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	6.97E-04
51	GO:0051082: unfolded protein binding	7.33E-04
52	GO:0031072: heat shock protein binding	1.01E-03
53	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.13E-03
54	GO:0004324: ferredoxin-NADP+ reductase activity	1.13E-03
55	GO:0003913: DNA photolyase activity	1.13E-03
56	GO:0005504: fatty acid binding	1.13E-03
57	GO:0002161: aminoacyl-tRNA editing activity	1.13E-03
58	GO:0008266: poly(U) RNA binding	1.13E-03
59	GO:0004857: enzyme inhibitor activity	1.56E-03
60	GO:0043023: ribosomal large subunit binding	1.62E-03
61	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.62E-03
62	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.62E-03
63	GO:0048487: beta-tubulin binding	1.62E-03
64	GO:0016851: magnesium chelatase activity	1.62E-03
65	GO:0004659: prenyltransferase activity	2.18E-03
66	GO:0080032: methyl jasmonate esterase activity	2.18E-03
67	GO:0045430: chalcone isomerase activity	2.18E-03
68	GO:0047134: protein-disulfide reductase activity	2.65E-03
69	GO:0004812: aminoacyl-tRNA ligase activity	2.65E-03
70	GO:0003959: NADPH dehydrogenase activity	2.78E-03
71	GO:0051538: 3 iron, 4 sulfur cluster binding	2.78E-03
72	GO:0004791: thioredoxin-disulfide reductase activity	3.32E-03
73	GO:2001070: starch binding	3.43E-03
74	GO:0080030: methyl indole-3-acetate esterase activity	3.43E-03
75	GO:0031177: phosphopantetheine binding	3.43E-03
76	GO:0016787: hydrolase activity	3.71E-03
77	GO:0048038: quinone binding	3.81E-03
78	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.13E-03
79	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.13E-03
80	GO:0004017: adenylate kinase activity	4.13E-03
81	GO:0000035: acyl binding	4.13E-03
82	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.34E-03
83	GO:0009881: photoreceptor activity	4.87E-03
84	GO:0008483: transaminase activity	4.90E-03
85	GO:0005509: calcium ion binding	5.31E-03
86	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	5.66E-03
87	GO:0004033: aldo-keto reductase (NADP) activity	5.66E-03
88	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	6.49E-03
89	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	6.49E-03
90	GO:0008173: RNA methyltransferase activity	6.49E-03
91	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	7.36E-03
92	GO:0003993: acid phosphatase activity	9.54E-03
93	GO:0044183: protein binding involved in protein folding	1.02E-02
94	GO:0003691: double-stranded telomeric DNA binding	1.02E-02
95	GO:0050661: NADP binding	1.04E-02
96	GO:0004089: carbonate dehydratase activity	1.23E-02
97	GO:0004565: beta-galactosidase activity	1.23E-02
98	GO:0000287: magnesium ion binding	1.42E-02
99	GO:0051287: NAD binding	1.43E-02
100	GO:0004407: histone deacetylase activity	1.69E-02
101	GO:0022891: substrate-specific transmembrane transporter activity	2.20E-02
102	GO:0030570: pectate lyase activity	2.20E-02
103	GO:0003756: protein disulfide isomerase activity	2.33E-02
104	GO:0015035: protein disulfide oxidoreductase activity	2.34E-02
105	GO:0050662: coenzyme binding	2.90E-02
106	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.92E-02
107	GO:0016491: oxidoreductase activity	3.02E-02
108	GO:0003723: RNA binding	3.29E-02
109	GO:0016413: O-acetyltransferase activity	3.99E-02
110	GO:0004721: phosphoprotein phosphatase activity	4.67E-02
111	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.84E-02
112	GO:0042802: identical protein binding	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0009507: chloroplast	1.89E-99
4	GO:0009535: chloroplast thylakoid membrane	1.05E-53
5	GO:0009570: chloroplast stroma	7.44E-50
6	GO:0009534: chloroplast thylakoid	4.78E-48
7	GO:0009941: chloroplast envelope	6.20E-47
8	GO:0009579: thylakoid	7.45E-31
9	GO:0009543: chloroplast thylakoid lumen	1.14E-24
10	GO:0031977: thylakoid lumen	5.07E-16
11	GO:0030095: chloroplast photosystem II	4.99E-12
12	GO:0005840: ribosome	1.68E-10
13	GO:0009654: photosystem II oxygen evolving complex	2.32E-09
14	GO:0031969: chloroplast membrane	2.12E-08
15	GO:0019898: extrinsic component of membrane	2.94E-08
16	GO:0010287: plastoglobule	6.37E-08
17	GO:0010319: stromule	8.58E-08
18	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.63E-06
19	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.84E-05
20	GO:0005960: glycine cleavage complex	3.65E-05
21	GO:0048046: apoplast	7.99E-05
22	GO:0015934: large ribosomal subunit	1.45E-04
23	GO:0009782: photosystem I antenna complex	3.19E-04
24	GO:0009783: photosystem II antenna complex	3.19E-04
25	GO:0009538: photosystem I reaction center	3.32E-04
26	GO:0009522: photosystem I	3.65E-04
27	GO:0009508: plastid chromosome	1.01E-03
28	GO:0009528: plastid inner membrane	1.13E-03
29	GO:0010007: magnesium chelatase complex	1.13E-03
30	GO:0030076: light-harvesting complex	1.26E-03
31	GO:0042651: thylakoid membrane	1.72E-03
32	GO:0009532: plastid stroma	1.89E-03
33	GO:0009527: plastid outer membrane	2.18E-03
34	GO:0009536: plastid	3.06E-03
35	GO:0009523: photosystem II	3.56E-03
36	GO:0009840: chloroplastic endopeptidase Clp complex	4.13E-03
37	GO:0016272: prefoldin complex	4.13E-03
38	GO:0009706: chloroplast inner membrane	4.15E-03
39	GO:0009295: nucleoid	4.90E-03
40	GO:0016020: membrane	5.51E-03
41	GO:0000783: nuclear telomere cap complex	6.49E-03
42	GO:0009707: chloroplast outer membrane	7.19E-03
43	GO:0005763: mitochondrial small ribosomal subunit	7.36E-03
44	GO:0032040: small-subunit processome	1.12E-02
45	GO:0043234: protein complex	1.57E-02
46	GO:0015935: small ribosomal subunit	1.94E-02
47	GO:0009504: cell plate	3.05E-02
48	GO:0005759: mitochondrial matrix	3.57E-02