co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G62300

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045730: respiratory burst	0.00E+00
2	GO:1900067: regulation of cellular response to alkaline pH	0.00E+00
3	GO:0097237: cellular response to toxic substance	0.00E+00
4	GO:0009699: phenylpropanoid biosynthetic process	1.60E-07
5	GO:0045227: capsule polysaccharide biosynthetic process	2.92E-06
6	GO:0033358: UDP-L-arabinose biosynthetic process	2.92E-06
7	GO:0080167: response to karrikin	4.95E-06
8	GO:0071669: plant-type cell wall organization or biogenesis	1.52E-05
9	GO:0009808: lignin metabolic process	2.60E-05
10	GO:0009555: pollen development	4.94E-05
11	GO:0046244: salicylic acid catabolic process	5.18E-05
12	GO:0080157: regulation of plant-type cell wall organization or biogenesis	5.18E-05
13	GO:0015706: nitrate transport	6.74E-05
14	GO:0009225: nucleotide-sugar metabolic process	1.02E-04
15	GO:0010372: positive regulation of gibberellin biosynthetic process	1.27E-04
16	GO:0009812: flavonoid metabolic process	1.27E-04
17	GO:0015865: purine nucleotide transport	1.27E-04
18	GO:0006012: galactose metabolic process	1.94E-04
19	GO:0006065: UDP-glucuronate biosynthetic process	2.17E-04
20	GO:0052546: cell wall pectin metabolic process	2.17E-04
21	GO:0009800: cinnamic acid biosynthetic process	3.17E-04
22	GO:0046836: glycolipid transport	3.17E-04
23	GO:0046902: regulation of mitochondrial membrane permeability	3.17E-04
24	GO:0033356: UDP-L-arabinose metabolic process	4.24E-04
25	GO:0009611: response to wounding	4.41E-04
26	GO:0042128: nitrate assimilation	5.37E-04
27	GO:0030041: actin filament polymerization	5.39E-04
28	GO:0032957: inositol trisphosphate metabolic process	5.39E-04
29	GO:0055085: transmembrane transport	6.14E-04
30	GO:0030244: cellulose biosynthetic process	6.24E-04
31	GO:0009832: plant-type cell wall biogenesis	6.55E-04
32	GO:0006559: L-phenylalanine catabolic process	6.60E-04
33	GO:0046855: inositol phosphate dephosphorylation	6.60E-04
34	GO:0033365: protein localization to organelle	6.60E-04
35	GO:0048317: seed morphogenesis	6.60E-04
36	GO:0098869: cellular oxidant detoxification	9.18E-04
37	GO:0006744: ubiquinone biosynthetic process	9.18E-04
38	GO:0009819: drought recovery	1.06E-03
39	GO:0006402: mRNA catabolic process	1.06E-03
40	GO:0045010: actin nucleation	1.06E-03
41	GO:0010215: cellulose microfibril organization	1.67E-03
42	GO:0009698: phenylpropanoid metabolic process	1.84E-03
43	GO:1903507: negative regulation of nucleic acid-templated transcription	1.84E-03
44	GO:0046856: phosphatidylinositol dephosphorylation	1.84E-03
45	GO:0000266: mitochondrial fission	2.01E-03
46	GO:0046274: lignin catabolic process	2.19E-03
47	GO:0018107: peptidyl-threonine phosphorylation	2.19E-03
48	GO:0034605: cellular response to heat	2.38E-03
49	GO:0009845: seed germination	2.51E-03
50	GO:0009901: anther dehiscence	2.56E-03
51	GO:0090351: seedling development	2.56E-03
52	GO:0048511: rhythmic process	3.37E-03
53	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.59E-03
54	GO:0040007: growth	3.80E-03
55	GO:0009306: protein secretion	4.03E-03
56	GO:0000271: polysaccharide biosynthetic process	4.49E-03
57	GO:0009960: endosperm development	4.72E-03
58	GO:0048868: pollen tube development	4.72E-03
59	GO:0002229: defense response to oomycetes	5.46E-03
60	GO:0031047: gene silencing by RNA	5.71E-03
61	GO:0032502: developmental process	5.71E-03
62	GO:0016579: protein deubiquitination	6.76E-03
63	GO:0001666: response to hypoxia	7.04E-03
64	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	7.31E-03
65	GO:0009651: response to salt stress	7.71E-03
66	GO:0006468: protein phosphorylation	8.08E-03
67	GO:0016049: cell growth	8.17E-03
68	GO:0048767: root hair elongation	8.76E-03
69	GO:0009813: flavonoid biosynthetic process	8.76E-03
70	GO:0009407: toxin catabolic process	9.06E-03
71	GO:0009753: response to jasmonic acid	9.62E-03
72	GO:0008152: metabolic process	9.89E-03
73	GO:0009867: jasmonic acid mediated signaling pathway	9.99E-03
74	GO:0006839: mitochondrial transport	1.09E-02
75	GO:0055114: oxidation-reduction process	1.25E-02
76	GO:0009636: response to toxic substance	1.30E-02
77	GO:0031347: regulation of defense response	1.37E-02
78	GO:0009664: plant-type cell wall organization	1.40E-02
79	GO:0009809: lignin biosynthetic process	1.47E-02
80	GO:0010224: response to UV-B	1.51E-02
81	GO:0018105: peptidyl-serine phosphorylation	1.93E-02
82	GO:0006511: ubiquitin-dependent protein catabolic process	2.17E-02
83	GO:0042744: hydrogen peroxide catabolic process	2.44E-02
84	GO:0050832: defense response to fungus	2.57E-02
85	GO:0016036: cellular response to phosphate starvation	2.66E-02
86	GO:0007623: circadian rhythm	2.79E-02
87	GO:0009414: response to water deprivation	3.16E-02
88	GO:0042742: defense response to bacterium	3.24E-02
89	GO:0071555: cell wall organization	3.24E-02
90	GO:0006979: response to oxidative stress	3.26E-02
91	GO:0030154: cell differentiation	3.52E-02
92	GO:0009723: response to ethylene	4.23E-02
93	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.55E-02
94	GO:0006810: transport	4.73E-02
95	GO:0005975: carbohydrate metabolic process	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0016710: trans-cinnamate 4-monooxygenase activity	0.00E+00
2	GO:0050373: UDP-arabinose 4-epimerase activity	2.92E-06
3	GO:0003978: UDP-glucose 4-epimerase activity	1.10E-05
4	GO:0015112: nitrate transmembrane transporter activity	4.00E-05
5	GO:0052691: UDP-arabinopyranose mutase activity	1.27E-04
6	GO:0016760: cellulose synthase (UDP-forming) activity	1.94E-04
7	GO:0045548: phenylalanine ammonia-lyase activity	2.17E-04
8	GO:0052659: inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity	2.17E-04
9	GO:0003979: UDP-glucose 6-dehydrogenase activity	2.17E-04
10	GO:0004445: inositol-polyphosphate 5-phosphatase activity	3.17E-04
11	GO:0052658: inositol-1,4,5-trisphosphate 5-phosphatase activity	3.17E-04
12	GO:0017089: glycolipid transporter activity	3.17E-04
13	GO:0016866: intramolecular transferase activity	4.24E-04
14	GO:0051861: glycolipid binding	4.24E-04
15	GO:0005471: ATP:ADP antiporter activity	5.39E-04
16	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	6.60E-04
17	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	7.17E-04
18	GO:0004012: phospholipid-translocating ATPase activity	7.87E-04
19	GO:0051753: mannan synthase activity	7.87E-04
20	GO:0052747: sinapyl alcohol dehydrogenase activity	1.06E-03
21	GO:0004564: beta-fructofuranosidase activity	1.06E-03
22	GO:0016207: 4-coumarate-CoA ligase activity	1.35E-03
23	GO:0004575: sucrose alpha-glucosidase activity	1.50E-03
24	GO:0045551: cinnamyl-alcohol dehydrogenase activity	2.01E-03
25	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	2.01E-03
26	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.19E-03
27	GO:0001046: core promoter sequence-specific DNA binding	2.96E-03
28	GO:0003714: transcription corepressor activity	2.96E-03
29	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	3.37E-03
30	GO:0016301: kinase activity	3.44E-03
31	GO:0004674: protein serine/threonine kinase activity	3.68E-03
32	GO:0001085: RNA polymerase II transcription factor binding	4.72E-03
33	GO:0004843: thiol-dependent ubiquitin-specific protease activity	5.46E-03
34	GO:0050660: flavin adenine dinucleotide binding	5.67E-03
35	GO:0004518: nuclease activity	5.71E-03
36	GO:0016759: cellulose synthase activity	6.23E-03
37	GO:0051213: dioxygenase activity	7.04E-03
38	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	9.36E-03
39	GO:0009055: electron carrier activity	9.62E-03
40	GO:0004842: ubiquitin-protein transferase activity	9.78E-03
41	GO:0004364: glutathione transferase activity	1.16E-02
42	GO:0051287: NAD binding	1.37E-02
43	GO:0016874: ligase activity	1.81E-02
44	GO:0003779: actin binding	1.85E-02
45	GO:0030246: carbohydrate binding	2.15E-02
46	GO:0016758: transferase activity, transferring hexosyl groups	2.18E-02
47	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.44E-02
48	GO:0015297: antiporter activity	2.70E-02
49	GO:0008194: UDP-glycosyltransferase activity	3.03E-02
50	GO:0016757: transferase activity, transferring glycosyl groups	3.05E-02
51	GO:0042802: identical protein binding	3.31E-02
52	GO:0003824: catalytic activity	3.55E-02
53	GO:0000287: magnesium ion binding	3.76E-02
54	GO:0004601: peroxidase activity	3.81E-02
55	GO:0003682: chromatin binding	3.97E-02
56	GO:0005524: ATP binding	4.40E-02

Rank	GO Term	Adjusted P value
1	GO:0016442: RISC complex	5.18E-05
2	GO:0000138: Golgi trans cisterna	5.18E-05
3	GO:0032580: Golgi cisterna membrane	4.06E-04
4	GO:0005886: plasma membrane	5.29E-04
5	GO:0005618: cell wall	6.17E-04
6	GO:0030173: integral component of Golgi membrane	7.87E-04
7	GO:0010494: cytoplasmic stress granule	1.35E-03
8	GO:0005740: mitochondrial envelope	1.67E-03
9	GO:0090404: pollen tube tip	1.84E-03
10	GO:0048471: perinuclear region of cytoplasm	1.84E-03
11	GO:0005774: vacuolar membrane	1.98E-03
12	GO:0016021: integral component of membrane	2.42E-03
13	GO:0005795: Golgi stack	2.56E-03
14	GO:0005741: mitochondrial outer membrane	3.37E-03
15	GO:0005794: Golgi apparatus	3.96E-03
16	GO:0000932: P-body	7.04E-03
17	GO:0005667: transcription factor complex	7.59E-03
18	GO:0005743: mitochondrial inner membrane	8.34E-03
19	GO:0009505: plant-type cell wall	8.64E-03
20	GO:0031902: late endosome membrane	1.13E-02
21	GO:0090406: pollen tube	1.19E-02
22	GO:0031966: mitochondrial membrane	1.40E-02
23	GO:0005635: nuclear envelope	1.55E-02
24	GO:0005834: heterotrimeric G-protein complex	1.74E-02
25	GO:0009524: phragmoplast	2.31E-02
26	GO:0005802: trans-Golgi network	2.56E-02
27	GO:0005768: endosome	2.91E-02