co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G62290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0030155: regulation of cell adhesion	0.00E+00
3	GO:0090627: plant epidermal cell differentiation	0.00E+00
4	GO:0009631: cold acclimation	2.79E-05
5	GO:0071588: hydrogen peroxide mediated signaling pathway	4.45E-05
6	GO:0000023: maltose metabolic process	4.45E-05
7	GO:0000025: maltose catabolic process	4.45E-05
8	GO:0005980: glycogen catabolic process	4.45E-05
9	GO:0005976: polysaccharide metabolic process	1.10E-04
10	GO:0048281: inflorescence morphogenesis	1.89E-04
11	GO:0010148: transpiration	2.78E-04
12	GO:0010600: regulation of auxin biosynthetic process	3.73E-04
13	GO:0015846: polyamine transport	3.73E-04
14	GO:0010021: amylopectin biosynthetic process	3.73E-04
15	GO:0006461: protein complex assembly	4.75E-04
16	GO:0009913: epidermal cell differentiation	5.82E-04
17	GO:0010019: chloroplast-nucleus signaling pathway	6.94E-04
18	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	6.94E-04
19	GO:0010103: stomatal complex morphogenesis	8.11E-04
20	GO:0010161: red light signaling pathway	8.11E-04
21	GO:0070370: cellular heat acclimation	8.11E-04
22	GO:0010928: regulation of auxin mediated signaling pathway	9.32E-04
23	GO:0008610: lipid biosynthetic process	9.32E-04
24	GO:0005978: glycogen biosynthetic process	9.32E-04
25	GO:0009704: de-etiolation	9.32E-04
26	GO:0009657: plastid organization	1.06E-03
27	GO:0001558: regulation of cell growth	1.06E-03
28	GO:0010206: photosystem II repair	1.19E-03
29	GO:0006783: heme biosynthetic process	1.19E-03
30	GO:0005982: starch metabolic process	1.32E-03
31	GO:0009409: response to cold	1.44E-03
32	GO:0006782: protoporphyrinogen IX biosynthetic process	1.47E-03
33	GO:0016485: protein processing	1.61E-03
34	GO:0005983: starch catabolic process	1.77E-03
35	GO:0010102: lateral root morphogenesis	1.92E-03
36	GO:0009266: response to temperature stimulus	2.09E-03
37	GO:0009944: polarity specification of adaxial/abaxial axis	2.60E-03
38	GO:0051302: regulation of cell division	2.77E-03
39	GO:0007017: microtubule-based process	2.77E-03
40	GO:0061077: chaperone-mediated protein folding	2.96E-03
41	GO:0003333: amino acid transmembrane transport	2.96E-03
42	GO:0010017: red or far-red light signaling pathway	3.14E-03
43	GO:0009686: gibberellin biosynthetic process	3.33E-03
44	GO:0001944: vasculature development	3.33E-03
45	GO:0048825: cotyledon development	4.56E-03
46	GO:0019252: starch biosynthetic process	4.56E-03
47	GO:0000302: response to reactive oxygen species	4.77E-03
48	GO:0009414: response to water deprivation	4.90E-03
49	GO:0030163: protein catabolic process	5.22E-03
50	GO:0015995: chlorophyll biosynthetic process	6.89E-03
51	GO:0032259: methylation	7.07E-03
52	GO:0006629: lipid metabolic process	7.38E-03
53	GO:0008152: metabolic process	8.13E-03
54	GO:0046686: response to cadmium ion	8.87E-03
55	GO:0034599: cellular response to oxidative stress	8.99E-03
56	GO:0009636: response to toxic substance	1.13E-02
57	GO:0009965: leaf morphogenesis	1.13E-02
58	GO:0009664: plant-type cell wall organization	1.22E-02
59	GO:0009585: red, far-red light phototransduction	1.28E-02
60	GO:0009740: gibberellic acid mediated signaling pathway	1.58E-02
61	GO:0009845: seed germination	2.05E-02
62	GO:0006508: proteolysis	2.10E-02
63	GO:0042744: hydrogen peroxide catabolic process	2.12E-02
64	GO:0009658: chloroplast organization	3.32E-02
65	GO:0048366: leaf development	3.73E-02
66	GO:0005975: carbohydrate metabolic process	4.03E-02
67	GO:0015979: photosynthesis	4.25E-02
68	GO:0045454: cell redox homeostasis	4.40E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
3	GO:0009899: ent-kaurene synthase activity	0.00E+00
4	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	4.45E-05
5	GO:0008184: glycogen phosphorylase activity	4.45E-05
6	GO:0004853: uroporphyrinogen decarboxylase activity	4.45E-05
7	GO:0004134: 4-alpha-glucanotransferase activity	4.45E-05
8	GO:0004645: phosphorylase activity	4.45E-05
9	GO:0047372: acylglycerol lipase activity	4.59E-05
10	GO:0016868: intramolecular transferase activity, phosphotransferases	1.10E-04
11	GO:0010297: heteropolysaccharide binding	1.10E-04
12	GO:0050736: O-malonyltransferase activity	1.10E-04
13	GO:0018708: thiol S-methyltransferase activity	1.10E-04
14	GO:0003844: 1,4-alpha-glucan branching enzyme activity	1.10E-04
15	GO:0043169: cation binding	1.89E-04
16	GO:0015203: polyamine transmembrane transporter activity	2.78E-04
17	GO:0019199: transmembrane receptor protein kinase activity	3.73E-04
18	GO:0042277: peptide binding	3.73E-04
19	GO:2001070: starch binding	5.82E-04
20	GO:0004130: cytochrome-c peroxidase activity	5.82E-04
21	GO:0016688: L-ascorbate peroxidase activity	5.82E-04
22	GO:0004620: phospholipase activity	8.11E-04
23	GO:0015174: basic amino acid transmembrane transporter activity	1.32E-03
24	GO:0044183: protein binding involved in protein folding	1.61E-03
25	GO:0015386: potassium:proton antiporter activity	1.61E-03
26	GO:0004565: beta-galactosidase activity	1.92E-03
27	GO:0004252: serine-type endopeptidase activity	2.12E-03
28	GO:0015079: potassium ion transmembrane transporter activity	2.77E-03
29	GO:0008168: methyltransferase activity	3.89E-03
30	GO:0005200: structural constituent of cytoskeleton	5.68E-03
31	GO:0008236: serine-type peptidase activity	7.14E-03
32	GO:0004222: metalloendopeptidase activity	7.91E-03
33	GO:0015293: symporter activity	1.13E-02
34	GO:0016787: hydrolase activity	1.33E-02
35	GO:0030170: pyridoxal phosphate binding	2.08E-02
36	GO:0015297: antiporter activity	2.35E-02
37	GO:0000287: magnesium ion binding	3.27E-02
38	GO:0046983: protein dimerization activity	3.55E-02
39	GO:0008233: peptidase activity	3.82E-02
40	GO:0043565: sequence-specific DNA binding	3.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	5.12E-09
2	GO:0009507: chloroplast	2.01E-07
3	GO:0009533: chloroplast stromal thylakoid	1.19E-05
4	GO:0009534: chloroplast thylakoid	4.83E-05
5	GO:0009941: chloroplast envelope	1.18E-04
6	GO:0009535: chloroplast thylakoid membrane	6.57E-04
7	GO:0009501: amyloplast	9.32E-04
8	GO:0045298: tubulin complex	1.19E-03
9	GO:0030095: chloroplast photosystem II	2.09E-03
10	GO:0042651: thylakoid membrane	2.77E-03
11	GO:0009523: photosystem II	4.56E-03
12	GO:0031977: thylakoid lumen	9.83E-03
13	GO:0009579: thylakoid	1.57E-02
14	GO:0009543: chloroplast thylakoid lumen	1.93E-02
15	GO:0005759: mitochondrial matrix	2.27E-02
16	GO:0009536: plastid	3.27E-02
17	GO:0005874: microtubule	3.78E-02
18	GO:0031969: chloroplast membrane	3.87E-02