co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G62180

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0018293: protein-FAD linkage	0.00E+00
2	GO:0033317: pantothenate biosynthetic process from valine	0.00E+00
3	GO:0034553: mitochondrial respiratory chain complex II assembly	0.00E+00
4	GO:0032780: negative regulation of ATPase activity	0.00E+00
5	GO:0009661: chromoplast organization	0.00E+00
6	GO:0055114: oxidation-reduction process	4.68E-05
7	GO:0006555: methionine metabolic process	9.47E-05
8	GO:0019509: L-methionine salvage from methylthioadenosine	1.30E-04
9	GO:0007623: circadian rhythm	1.43E-04
10	GO:0071461: cellular response to redox state	2.41E-04
11	GO:0048438: floral whorl development	2.41E-04
12	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	2.41E-04
13	GO:0006835: dicarboxylic acid transport	2.41E-04
14	GO:0010100: negative regulation of photomorphogenesis	2.70E-04
15	GO:0080183: response to photooxidative stress	5.34E-04
16	GO:0043100: pyrimidine nucleobase salvage	5.34E-04
17	GO:0042754: negative regulation of circadian rhythm	5.34E-04
18	GO:2000030: regulation of response to red or far red light	5.34E-04
19	GO:0080005: photosystem stoichiometry adjustment	5.34E-04
20	GO:0006898: receptor-mediated endocytosis	5.34E-04
21	GO:2000071: regulation of defense response by callose deposition	5.34E-04
22	GO:0007154: cell communication	5.34E-04
23	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	5.34E-04
24	GO:0010220: positive regulation of vernalization response	5.34E-04
25	GO:1904143: positive regulation of carotenoid biosynthetic process	5.34E-04
26	GO:0009785: blue light signaling pathway	6.81E-04
27	GO:0006099: tricarboxylic acid cycle	8.38E-04
28	GO:0016570: histone modification	8.68E-04
29	GO:0071230: cellular response to amino acid stimulus	8.68E-04
30	GO:1901562: response to paraquat	8.68E-04
31	GO:0015940: pantothenate biosynthetic process	8.68E-04
32	GO:0044375: regulation of peroxisome size	8.68E-04
33	GO:0009640: photomorphogenesis	1.09E-03
34	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.24E-03
35	GO:0009647: skotomorphogenesis	1.24E-03
36	GO:0009963: positive regulation of flavonoid biosynthetic process	1.24E-03
37	GO:2001141: regulation of RNA biosynthetic process	1.24E-03
38	GO:0006646: phosphatidylethanolamine biosynthetic process	1.65E-03
39	GO:0070534: protein K63-linked ubiquitination	1.65E-03
40	GO:0015743: malate transport	1.65E-03
41	GO:0010600: regulation of auxin biosynthetic process	1.65E-03
42	GO:0071585: detoxification of cadmium ion	1.65E-03
43	GO:0015846: polyamine transport	1.65E-03
44	GO:0009649: entrainment of circadian clock	1.65E-03
45	GO:0071483: cellular response to blue light	1.65E-03
46	GO:0009902: chloroplast relocation	1.65E-03
47	GO:0034613: cellular protein localization	1.65E-03
48	GO:0010021: amylopectin biosynthetic process	1.65E-03
49	GO:0009909: regulation of flower development	1.79E-03
50	GO:0006520: cellular amino acid metabolic process	2.06E-03
51	GO:0016120: carotene biosynthetic process	2.11E-03
52	GO:0046283: anthocyanin-containing compound metabolic process	2.11E-03
53	GO:0009904: chloroplast accumulation movement	2.11E-03
54	GO:0010236: plastoquinone biosynthetic process	2.11E-03
55	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.54E-03
56	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	2.60E-03
57	GO:0006301: postreplication repair	2.60E-03
58	GO:0070814: hydrogen sulfide biosynthetic process	2.60E-03
59	GO:0048317: seed morphogenesis	2.60E-03
60	GO:0010190: cytochrome b6f complex assembly	2.60E-03
61	GO:0000060: protein import into nucleus, translocation	2.60E-03
62	GO:0010077: maintenance of inflorescence meristem identity	3.12E-03
63	GO:1901001: negative regulation of response to salt stress	3.12E-03
64	GO:0080060: integument development	3.12E-03
65	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	3.12E-03
66	GO:0010076: maintenance of floral meristem identity	3.12E-03
67	GO:0017148: negative regulation of translation	3.12E-03
68	GO:0009903: chloroplast avoidance movement	3.12E-03
69	GO:0010189: vitamin E biosynthetic process	3.12E-03
70	GO:0006508: proteolysis	3.25E-03
71	GO:0016126: sterol biosynthetic process	3.66E-03
72	GO:0050790: regulation of catalytic activity	3.68E-03
73	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	3.68E-03
74	GO:0010161: red light signaling pathway	3.68E-03
75	GO:0045995: regulation of embryonic development	3.68E-03
76	GO:0006368: transcription elongation from RNA polymerase II promoter	3.68E-03
77	GO:0009231: riboflavin biosynthetic process	4.27E-03
78	GO:0006102: isocitrate metabolic process	4.27E-03
79	GO:0016559: peroxisome fission	4.27E-03
80	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.27E-03
81	GO:0030091: protein repair	4.27E-03
82	GO:0050821: protein stabilization	4.27E-03
83	GO:0071482: cellular response to light stimulus	4.89E-03
84	GO:0015996: chlorophyll catabolic process	4.89E-03
85	GO:0048574: long-day photoperiodism, flowering	4.89E-03
86	GO:0009739: response to gibberellin	5.70E-03
87	GO:0051453: regulation of intracellular pH	6.21E-03
88	GO:0009098: leucine biosynthetic process	6.21E-03
89	GO:0045036: protein targeting to chloroplast	6.92E-03
90	GO:0009641: shade avoidance	6.92E-03
91	GO:0051555: flavonol biosynthetic process	6.92E-03
92	GO:0009970: cellular response to sulfate starvation	6.92E-03
93	GO:0000103: sulfate assimilation	6.92E-03
94	GO:0006816: calcium ion transport	7.65E-03
95	GO:0009682: induced systemic resistance	7.65E-03
96	GO:0006879: cellular iron ion homeostasis	7.65E-03
97	GO:0006352: DNA-templated transcription, initiation	7.65E-03
98	GO:0000272: polysaccharide catabolic process	7.65E-03
99	GO:0018119: peptidyl-cysteine S-nitrosylation	7.65E-03
100	GO:0010582: floral meristem determinacy	8.41E-03
101	GO:0009718: anthocyanin-containing compound biosynthetic process	9.20E-03
102	GO:0006108: malate metabolic process	9.20E-03
103	GO:0010207: photosystem II assembly	1.00E-02
104	GO:0007015: actin filament organization	1.00E-02
105	GO:0009585: red, far-red light phototransduction	1.05E-02
106	GO:0007031: peroxisome organization	1.09E-02
107	GO:0051603: proteolysis involved in cellular protein catabolic process	1.09E-02
108	GO:0010224: response to UV-B	1.09E-02
109	GO:0051017: actin filament bundle assembly	1.26E-02
110	GO:0008299: isoprenoid biosynthetic process	1.35E-02
111	GO:0006874: cellular calcium ion homeostasis	1.35E-02
112	GO:0009620: response to fungus	1.37E-02
113	GO:0010017: red or far-red light signaling pathway	1.54E-02
114	GO:0016226: iron-sulfur cluster assembly	1.54E-02
115	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.54E-02
116	GO:0006012: galactose metabolic process	1.64E-02
117	GO:0009693: ethylene biosynthetic process	1.64E-02
118	GO:0040007: growth	1.64E-02
119	GO:0006817: phosphate ion transport	1.74E-02
120	GO:0010118: stomatal movement	1.95E-02
121	GO:0042631: cellular response to water deprivation	1.95E-02
122	GO:0042391: regulation of membrane potential	1.95E-02
123	GO:0080022: primary root development	1.95E-02
124	GO:0009058: biosynthetic process	1.99E-02
125	GO:0046686: response to cadmium ion	2.00E-02
126	GO:0009753: response to jasmonic acid	2.03E-02
127	GO:0010182: sugar mediated signaling pathway	2.05E-02
128	GO:0009741: response to brassinosteroid	2.05E-02
129	GO:0006662: glycerol ether metabolic process	2.05E-02
130	GO:0006814: sodium ion transport	2.16E-02
131	GO:0042752: regulation of circadian rhythm	2.16E-02
132	GO:0009851: auxin biosynthetic process	2.27E-02
133	GO:0019252: starch biosynthetic process	2.27E-02
134	GO:0008654: phospholipid biosynthetic process	2.27E-02
135	GO:0002229: defense response to oomycetes	2.38E-02
136	GO:0009630: gravitropism	2.50E-02
137	GO:0019761: glucosinolate biosynthetic process	2.50E-02
138	GO:0030163: protein catabolic process	2.62E-02
139	GO:0009567: double fertilization forming a zygote and endosperm	2.73E-02
140	GO:0006464: cellular protein modification process	2.73E-02
141	GO:0015995: chlorophyll biosynthetic process	3.48E-02
142	GO:0010411: xyloglucan metabolic process	3.48E-02
143	GO:0048573: photoperiodism, flowering	3.48E-02
144	GO:0018298: protein-chromophore linkage	3.75E-02
145	GO:0009813: flavonoid biosynthetic process	3.88E-02
146	GO:0009658: chloroplast organization	4.01E-02
147	GO:0009407: toxin catabolic process	4.01E-02
148	GO:0006811: ion transport	4.01E-02
149	GO:0035556: intracellular signal transduction	4.06E-02
150	GO:0010043: response to zinc ion	4.15E-02
151	GO:0007568: aging	4.15E-02
152	GO:0010119: regulation of stomatal movement	4.15E-02
153	GO:0009867: jasmonic acid mediated signaling pathway	4.43E-02
154	GO:0045087: innate immune response	4.43E-02
155	GO:0045893: positive regulation of transcription, DNA-templated	4.50E-02
156	GO:0034599: cellular response to oxidative stress	4.57E-02
157	GO:0009723: response to ethylene	4.63E-02
158	GO:0009409: response to cold	4.64E-02
159	GO:0080167: response to karrikin	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0042030: ATPase inhibitor activity	0.00E+00
2	GO:0004592: pantoate-beta-alanine ligase activity	0.00E+00
3	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
4	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
5	GO:0050486: intramolecular transferase activity, transferring hydroxy groups	0.00E+00
6	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
7	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
8	GO:0017153: sodium:dicarboxylate symporter activity	0.00E+00
9	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
10	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	9.82E-06
11	GO:0000254: C-4 methylsterol oxidase activity	2.23E-05
12	GO:0008106: alcohol dehydrogenase (NADP+) activity	2.23E-05
13	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	9.47E-05
14	GO:0016491: oxidoreductase activity	1.05E-04
15	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.41E-04
16	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	2.41E-04
17	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.41E-04
18	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	2.41E-04
19	GO:0016780: phosphotransferase activity, for other substituted phosphate groups	2.41E-04
20	GO:0008066: glutamate receptor activity	2.41E-04
21	GO:0016783: sulfurtransferase activity	2.41E-04
22	GO:0010313: phytochrome binding	2.41E-04
23	GO:0004307: ethanolaminephosphotransferase activity	2.41E-04
24	GO:0000989: transcription factor activity, transcription factor binding	3.27E-04
25	GO:0015179: L-amino acid transmembrane transporter activity	5.34E-04
26	GO:0043425: bHLH transcription factor binding	5.34E-04
27	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	5.34E-04
28	GO:0033201: alpha-1,4-glucan synthase activity	5.34E-04
29	GO:0050347: trans-octaprenyltranstransferase activity	5.34E-04
30	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	5.34E-04
31	GO:0030572: phosphatidyltransferase activity	5.34E-04
32	GO:0004046: aminoacylase activity	5.34E-04
33	GO:1990269: RNA polymerase II C-terminal domain phosphoserine binding	5.34E-04
34	GO:0004142: diacylglycerol cholinephosphotransferase activity	5.34E-04
35	GO:0004450: isocitrate dehydrogenase (NADP+) activity	5.34E-04
36	GO:0008236: serine-type peptidase activity	5.51E-04
37	GO:0001076: transcription factor activity, RNA polymerase II transcription factor binding	8.68E-04
38	GO:0004180: carboxypeptidase activity	8.68E-04
39	GO:0010277: chlorophyllide a oxygenase [overall] activity	8.68E-04
40	GO:0004373: glycogen (starch) synthase activity	8.68E-04
41	GO:0003913: DNA photolyase activity	8.68E-04
42	GO:0004557: alpha-galactosidase activity	8.68E-04
43	GO:0003861: 3-isopropylmalate dehydratase activity	8.68E-04
44	GO:0003935: GTP cyclohydrolase II activity	8.68E-04
45	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	8.68E-04
46	GO:0004781: sulfate adenylyltransferase (ATP) activity	8.68E-04
47	GO:0048027: mRNA 5'-UTR binding	1.24E-03
48	GO:0015203: polyamine transmembrane transporter activity	1.24E-03
49	GO:0004792: thiosulfate sulfurtransferase activity	1.24E-03
50	GO:0042802: identical protein binding	1.29E-03
51	GO:0001053: plastid sigma factor activity	1.65E-03
52	GO:0016987: sigma factor activity	1.65E-03
53	GO:0009011: starch synthase activity	1.65E-03
54	GO:0045431: flavonol synthase activity	2.11E-03
55	GO:0008177: succinate dehydrogenase (ubiquinone) activity	2.11E-03
56	GO:0048038: quinone binding	2.54E-03
57	GO:0004709: MAP kinase kinase kinase activity	2.60E-03
58	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	2.60E-03
59	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	2.60E-03
60	GO:0016161: beta-amylase activity	3.12E-03
61	GO:0030060: L-malate dehydrogenase activity	3.12E-03
62	GO:0005261: cation channel activity	3.12E-03
63	GO:0009881: photoreceptor activity	3.68E-03
64	GO:0015140: malate transmembrane transporter activity	3.68E-03
65	GO:0030674: protein binding, bridging	4.27E-03
66	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	4.27E-03
67	GO:0004034: aldose 1-epimerase activity	4.27E-03
68	GO:0015174: basic amino acid transmembrane transporter activity	6.21E-03
69	GO:0019904: protein domain specific binding	7.65E-03
70	GO:0004185: serine-type carboxypeptidase activity	7.79E-03
71	GO:0015293: symporter activity	8.76E-03
72	GO:0031072: heat shock protein binding	9.20E-03
73	GO:0005262: calcium channel activity	9.20E-03
74	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	9.20E-03
75	GO:0005315: inorganic phosphate transmembrane transporter activity	9.20E-03
76	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.00E-02
77	GO:0030552: cAMP binding	1.09E-02
78	GO:0030553: cGMP binding	1.09E-02
79	GO:0005217: intracellular ligand-gated ion channel activity	1.09E-02
80	GO:0004970: ionotropic glutamate receptor activity	1.09E-02
81	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.30E-02
82	GO:0005216: ion channel activity	1.35E-02
83	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.45E-02
84	GO:0004176: ATP-dependent peptidase activity	1.45E-02
85	GO:0042803: protein homodimerization activity	1.51E-02
86	GO:0015035: protein disulfide oxidoreductase activity	1.55E-02
87	GO:0047134: protein-disulfide reductase activity	1.84E-02
88	GO:0005249: voltage-gated potassium channel activity	1.95E-02
89	GO:0030551: cyclic nucleotide binding	1.95E-02
90	GO:0004527: exonuclease activity	2.05E-02
91	GO:0008080: N-acetyltransferase activity	2.05E-02
92	GO:0030170: pyridoxal phosphate binding	2.09E-02
93	GO:0004791: thioredoxin-disulfide reductase activity	2.16E-02
94	GO:0016853: isomerase activity	2.16E-02
95	GO:0010181: FMN binding	2.16E-02
96	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.38E-02
97	GO:0004197: cysteine-type endopeptidase activity	2.50E-02
98	GO:0004518: nuclease activity	2.50E-02
99	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.62E-02
100	GO:0016791: phosphatase activity	2.73E-02
101	GO:0008270: zinc ion binding	2.77E-02
102	GO:0008483: transaminase activity	2.85E-02
103	GO:0008237: metallopeptidase activity	2.85E-02
104	GO:0016413: O-acetyltransferase activity	2.98E-02
105	GO:0005515: protein binding	3.28E-02
106	GO:0004721: phosphoprotein phosphatase activity	3.48E-02
107	GO:0030247: polysaccharide binding	3.48E-02
108	GO:0004222: metalloendopeptidase activity	4.01E-02
109	GO:0030145: manganese ion binding	4.15E-02
110	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.43E-02
111	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.71E-02
112	GO:0051539: 4 iron, 4 sulfur cluster binding	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0031313: extrinsic component of endosome membrane	0.00E+00
2	GO:0009507: chloroplast	7.65E-08
3	GO:0009501: amyloplast	2.19E-04
4	GO:0000152: nuclear ubiquitin ligase complex	2.41E-04
5	GO:0031234: extrinsic component of cytoplasmic side of plasma membrane	2.41E-04
6	GO:0005764: lysosome	7.67E-04
7	GO:0031372: UBC13-MMS2 complex	1.65E-03
8	GO:0016593: Cdc73/Paf1 complex	1.65E-03
9	GO:0009526: plastid envelope	1.65E-03
10	GO:0005747: mitochondrial respiratory chain complex I	2.03E-03
11	GO:0031969: chloroplast membrane	2.42E-03
12	GO:0009706: chloroplast inner membrane	2.47E-03
13	GO:0009840: chloroplastic endopeptidase Clp complex	3.12E-03
14	GO:0005777: peroxisome	3.46E-03
15	GO:0031982: vesicle	4.27E-03
16	GO:0005773: vacuole	4.61E-03
17	GO:0005779: integral component of peroxisomal membrane	4.89E-03
18	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.54E-03
19	GO:0016604: nuclear body	6.21E-03
20	GO:0005884: actin filament	7.65E-03
21	GO:0030659: cytoplasmic vesicle membrane	1.00E-02
22	GO:0005758: mitochondrial intermembrane space	1.26E-02
23	GO:0009536: plastid	1.33E-02
24	GO:0009532: plastid stroma	1.45E-02
25	GO:0005759: mitochondrial matrix	2.37E-02
26	GO:0010319: stromule	2.85E-02
27	GO:0005778: peroxisomal membrane	2.85E-02
28	GO:0009535: chloroplast thylakoid membrane	3.66E-02
29	GO:0009505: plant-type cell wall	4.15E-02
30	GO:0009570: chloroplast stroma	4.33E-02
31	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	4.40E-02