co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G61890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042353: fucose biosynthetic process	0.00E+00
2	GO:0060416: response to growth hormone	0.00E+00
3	GO:0035024: negative regulation of Rho protein signal transduction	0.00E+00
4	GO:0010046: response to mycotoxin	0.00E+00
5	GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome	0.00E+00
6	GO:0006862: nucleotide transport	0.00E+00
7	GO:0009695: jasmonic acid biosynthetic process	1.15E-06
8	GO:0010200: response to chitin	3.23E-06
9	GO:0009611: response to wounding	7.74E-06
10	GO:0031408: oxylipin biosynthetic process	5.45E-05
11	GO:0098655: cation transmembrane transport	8.84E-05
12	GO:0009737: response to abscisic acid	1.54E-04
13	GO:0010193: response to ozone	1.58E-04
14	GO:0051180: vitamin transport	1.88E-04
15	GO:0030974: thiamine pyrophosphate transport	1.88E-04
16	GO:0009865: pollen tube adhesion	1.88E-04
17	GO:0006680: glucosylceramide catabolic process	1.88E-04
18	GO:0098656: anion transmembrane transport	2.29E-04
19	GO:0015893: drug transport	4.24E-04
20	GO:0006741: NADP biosynthetic process	4.24E-04
21	GO:1901679: nucleotide transmembrane transport	4.24E-04
22	GO:0080148: negative regulation of response to water deprivation	4.24E-04
23	GO:0010507: negative regulation of autophagy	4.24E-04
24	GO:0031407: oxylipin metabolic process	4.24E-04
25	GO:0042754: negative regulation of circadian rhythm	4.24E-04
26	GO:0010289: homogalacturonan biosynthetic process	4.24E-04
27	GO:2000030: regulation of response to red or far red light	4.24E-04
28	GO:0006811: ion transport	4.27E-04
29	GO:0006839: mitochondrial transport	6.03E-04
30	GO:0070588: calcium ion transmembrane transport	6.12E-04
31	GO:0080121: AMP transport	6.92E-04
32	GO:0080168: abscisic acid transport	6.92E-04
33	GO:0090630: activation of GTPase activity	6.92E-04
34	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	6.92E-04
35	GO:0019674: NAD metabolic process	6.92E-04
36	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	6.92E-04
37	GO:0009873: ethylene-activated signaling pathway	8.38E-04
38	GO:0009399: nitrogen fixation	9.86E-04
39	GO:0033014: tetrapyrrole biosynthetic process	9.86E-04
40	GO:0019363: pyridine nucleotide biosynthetic process	9.86E-04
41	GO:0010371: regulation of gibberellin biosynthetic process	9.86E-04
42	GO:0006970: response to osmotic stress	1.14E-03
43	GO:0045492: xylan biosynthetic process	1.16E-03
44	GO:0006749: glutathione metabolic process	1.31E-03
45	GO:0034440: lipid oxidation	1.31E-03
46	GO:0015867: ATP transport	1.31E-03
47	GO:1902347: response to strigolactone	1.31E-03
48	GO:0009694: jasmonic acid metabolic process	1.31E-03
49	GO:0045487: gibberellin catabolic process	1.66E-03
50	GO:0006665: sphingolipid metabolic process	1.66E-03
51	GO:0009247: glycolipid biosynthetic process	1.66E-03
52	GO:0035435: phosphate ion transmembrane transport	2.05E-03
53	GO:0006796: phosphate-containing compound metabolic process	2.05E-03
54	GO:0015866: ADP transport	2.05E-03
55	GO:0010256: endomembrane system organization	2.05E-03
56	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.46E-03
57	GO:0080086: stamen filament development	2.46E-03
58	GO:0010029: regulation of seed germination	2.73E-03
59	GO:1900057: positive regulation of leaf senescence	2.90E-03
60	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	2.90E-03
61	GO:0006401: RNA catabolic process	2.90E-03
62	GO:0006955: immune response	2.90E-03
63	GO:0006875: cellular metal ion homeostasis	3.36E-03
64	GO:0019375: galactolipid biosynthetic process	3.36E-03
65	GO:0009704: de-etiolation	3.36E-03
66	GO:2000070: regulation of response to water deprivation	3.36E-03
67	GO:0007155: cell adhesion	3.36E-03
68	GO:0009834: plant-type secondary cell wall biogenesis	3.71E-03
69	GO:0048193: Golgi vesicle transport	3.84E-03
70	GO:0009699: phenylpropanoid biosynthetic process	3.84E-03
71	GO:0009617: response to bacterium	3.95E-03
72	GO:0006783: heme biosynthetic process	4.35E-03
73	GO:2000280: regulation of root development	4.87E-03
74	GO:0006779: porphyrin-containing compound biosynthetic process	4.87E-03
75	GO:0006782: protoporphyrinogen IX biosynthetic process	5.42E-03
76	GO:0019538: protein metabolic process	5.42E-03
77	GO:0055062: phosphate ion homeostasis	5.42E-03
78	GO:0048829: root cap development	5.42E-03
79	GO:0009640: photomorphogenesis	5.48E-03
80	GO:0051707: response to other organism	5.48E-03
81	GO:0018119: peptidyl-cysteine S-nitrosylation	5.99E-03
82	GO:0010015: root morphogenesis	5.99E-03
83	GO:0009698: phenylpropanoid metabolic process	5.99E-03
84	GO:0006855: drug transmembrane transport	6.39E-03
85	GO:0071365: cellular response to auxin stimulus	6.58E-03
86	GO:0006820: anion transport	6.58E-03
87	GO:0050826: response to freezing	7.19E-03
88	GO:0018107: peptidyl-threonine phosphorylation	7.19E-03
89	GO:0055046: microgametogenesis	7.19E-03
90	GO:0009809: lignin biosynthetic process	7.38E-03
91	GO:0010224: response to UV-B	7.64E-03
92	GO:0071732: cellular response to nitric oxide	8.47E-03
93	GO:0009969: xyloglucan biosynthetic process	8.47E-03
94	GO:0009901: anther dehiscence	8.47E-03
95	GO:0055085: transmembrane transport	8.77E-03
96	GO:0009620: response to fungus	9.60E-03
97	GO:0009863: salicylic acid mediated signaling pathway	9.83E-03
98	GO:2000377: regulation of reactive oxygen species metabolic process	9.83E-03
99	GO:0009624: response to nematode	1.05E-02
100	GO:0009269: response to desiccation	1.13E-02
101	GO:0009751: response to salicylic acid	1.17E-02
102	GO:0031348: negative regulation of defense response	1.20E-02
103	GO:0030245: cellulose catabolic process	1.20E-02
104	GO:0009686: gibberellin biosynthetic process	1.28E-02
105	GO:0071369: cellular response to ethylene stimulus	1.28E-02
106	GO:0040007: growth	1.28E-02
107	GO:0001944: vasculature development	1.28E-02
108	GO:0009753: response to jasmonic acid	1.30E-02
109	GO:0048443: stamen development	1.35E-02
110	GO:0009651: response to salt stress	1.46E-02
111	GO:0000271: polysaccharide biosynthetic process	1.51E-02
112	GO:0048653: anther development	1.51E-02
113	GO:0042631: cellular response to water deprivation	1.51E-02
114	GO:0009790: embryo development	1.54E-02
115	GO:0071472: cellular response to salt stress	1.60E-02
116	GO:0006520: cellular amino acid metabolic process	1.60E-02
117	GO:0048868: pollen tube development	1.60E-02
118	GO:0045489: pectin biosynthetic process	1.60E-02
119	GO:0048544: recognition of pollen	1.68E-02
120	GO:0006814: sodium ion transport	1.68E-02
121	GO:0009414: response to water deprivation	1.71E-02
122	GO:0009749: response to glucose	1.77E-02
123	GO:0055072: iron ion homeostasis	1.77E-02
124	GO:0007623: circadian rhythm	1.83E-02
125	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.85E-02
126	GO:0071281: cellular response to iron ion	2.03E-02
127	GO:1901657: glycosyl compound metabolic process	2.03E-02
128	GO:0009639: response to red or far red light	2.13E-02
129	GO:0019760: glucosinolate metabolic process	2.13E-02
130	GO:0010468: regulation of gene expression	2.18E-02
131	GO:0051607: defense response to virus	2.31E-02
132	GO:0010027: thylakoid membrane organization	2.41E-02
133	GO:0009555: pollen development	2.45E-02
134	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.51E-02
135	GO:0009627: systemic acquired resistance	2.61E-02
136	GO:0015995: chlorophyll biosynthetic process	2.71E-02
137	GO:0016049: cell growth	2.81E-02
138	GO:0045893: positive regulation of transcription, DNA-templated	2.91E-02
139	GO:0006468: protein phosphorylation	2.95E-02
140	GO:0010311: lateral root formation	3.02E-02
141	GO:0009407: toxin catabolic process	3.12E-02
142	GO:0006810: transport	3.13E-02
143	GO:0048527: lateral root development	3.23E-02
144	GO:0010119: regulation of stomatal movement	3.23E-02
145	GO:0005975: carbohydrate metabolic process	3.28E-02
146	GO:0006865: amino acid transport	3.34E-02
147	GO:0045087: innate immune response	3.45E-02
148	GO:0016051: carbohydrate biosynthetic process	3.45E-02
149	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.62E-02
150	GO:0006952: defense response	3.74E-02
151	GO:0030001: metal ion transport	3.78E-02
152	GO:0009636: response to toxic substance	4.48E-02
153	GO:0000165: MAPK cascade	4.73E-02
154	GO:0006812: cation transport	4.85E-02
155	GO:0009846: pollen germination	4.85E-02
156	GO:0042538: hyperosmotic salinity response	4.85E-02
157	GO:0006351: transcription, DNA-templated	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0008419: RNA lariat debranching enzyme activity	0.00E+00
2	GO:0080123: jasmonate-amino synthetase activity	0.00E+00
3	GO:0015215: nucleotide transmembrane transporter activity	0.00E+00
4	GO:0070566: adenylyltransferase activity	0.00E+00
5	GO:0017048: Rho GTPase binding	0.00E+00
6	GO:0016629: 12-oxophytodienoate reductase activity	1.70E-06
7	GO:0046423: allene-oxide cyclase activity	6.26E-06
8	GO:0016621: cinnamoyl-CoA reductase activity	1.18E-04
9	GO:0010181: FMN binding	1.29E-04
10	GO:0090440: abscisic acid transporter activity	1.88E-04
11	GO:0004348: glucosylceramidase activity	1.88E-04
12	GO:0042736: NADH kinase activity	1.88E-04
13	GO:0090422: thiamine pyrophosphate transporter activity	1.88E-04
14	GO:0004103: choline kinase activity	4.24E-04
15	GO:0008883: glutamyl-tRNA reductase activity	4.24E-04
16	GO:0001047: core promoter binding	4.24E-04
17	GO:0017040: ceramidase activity	4.24E-04
18	GO:0003958: NADPH-hemoprotein reductase activity	4.24E-04
19	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	4.24E-04
20	GO:0004383: guanylate cyclase activity	6.92E-04
21	GO:0016165: linoleate 13S-lipoxygenase activity	6.92E-04
22	GO:0005432: calcium:sodium antiporter activity	9.86E-04
23	GO:0035250: UDP-galactosyltransferase activity	9.86E-04
24	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	9.86E-04
25	GO:0001653: peptide receptor activity	9.86E-04
26	GO:0008514: organic anion transmembrane transporter activity	1.16E-03
27	GO:0004659: prenyltransferase activity	1.31E-03
28	GO:0043015: gamma-tubulin binding	1.31E-03
29	GO:0080122: AMP transmembrane transporter activity	1.66E-03
30	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.66E-03
31	GO:0004356: glutamate-ammonia ligase activity	1.66E-03
32	GO:0008381: mechanically-gated ion channel activity	1.66E-03
33	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.30E-03
34	GO:0005347: ATP transmembrane transporter activity	2.46E-03
35	GO:0015217: ADP transmembrane transporter activity	2.46E-03
36	GO:0015103: inorganic anion transmembrane transporter activity	2.90E-03
37	GO:0019899: enzyme binding	2.90E-03
38	GO:0004427: inorganic diphosphatase activity	2.90E-03
39	GO:0015297: antiporter activity	2.98E-03
40	GO:0015491: cation:cation antiporter activity	3.36E-03
41	GO:0015238: drug transmembrane transporter activity	3.53E-03
42	GO:0005096: GTPase activator activity	3.53E-03
43	GO:0003951: NAD+ kinase activity	3.84E-03
44	GO:0005524: ATP binding	4.49E-03
45	GO:0044212: transcription regulatory region DNA binding	5.02E-03
46	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	5.42E-03
47	GO:0004864: protein phosphatase inhibitor activity	5.42E-03
48	GO:0043621: protein self-association	5.93E-03
49	GO:0005315: inorganic phosphate transmembrane transporter activity	7.19E-03
50	GO:0005262: calcium channel activity	7.19E-03
51	GO:0015114: phosphate ion transmembrane transporter activity	7.19E-03
52	GO:0005388: calcium-transporting ATPase activity	7.19E-03
53	GO:0000175: 3'-5'-exoribonuclease activity	7.19E-03
54	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.82E-03
55	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	9.31E-03
56	GO:0004857: enzyme inhibitor activity	9.83E-03
57	GO:0051087: chaperone binding	1.05E-02
58	GO:0004707: MAP kinase activity	1.13E-02
59	GO:0004540: ribonuclease activity	1.13E-02
60	GO:0005516: calmodulin binding	1.14E-02
61	GO:0004674: protein serine/threonine kinase activity	1.16E-02
62	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.20E-02
63	GO:0043565: sequence-specific DNA binding	1.25E-02
64	GO:0016301: kinase activity	1.48E-02
65	GO:0015144: carbohydrate transmembrane transporter activity	1.58E-02
66	GO:0046873: metal ion transmembrane transporter activity	1.60E-02
67	GO:0050662: coenzyme binding	1.68E-02
68	GO:0005351: sugar:proton symporter activity	1.78E-02
69	GO:0005215: transporter activity	2.06E-02
70	GO:0003677: DNA binding	2.18E-02
71	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.49E-02
72	GO:0004004: ATP-dependent RNA helicase activity	2.71E-02
73	GO:0102483: scopolin beta-glucosidase activity	2.71E-02
74	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.81E-02
75	GO:0030246: carbohydrate binding	3.54E-02
76	GO:0008422: beta-glucosidase activity	3.67E-02
77	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.67E-02
78	GO:0050661: NADP binding	3.78E-02
79	GO:0004364: glutathione transferase activity	4.01E-02
80	GO:0016757: transferase activity, transferring glycosyl groups	4.06E-02
81	GO:0035091: phosphatidylinositol binding	4.36E-02
82	GO:0004722: protein serine/threonine phosphatase activity	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0070382: exocytic vesicle	1.88E-04
2	GO:0045177: apical part of cell	9.86E-04
3	GO:0000178: exosome (RNase complex)	1.66E-03
4	GO:0005743: mitochondrial inner membrane	2.29E-03
5	GO:0030173: integral component of Golgi membrane	2.46E-03
6	GO:0046658: anchored component of plasma membrane	4.51E-03
7	GO:0016021: integral component of membrane	4.57E-03
8	GO:0009536: plastid	7.17E-03
9	GO:0005938: cell cortex	7.19E-03
10	GO:0000139: Golgi membrane	8.51E-03
11	GO:0009706: chloroplast inner membrane	1.05E-02
12	GO:0031225: anchored component of membrane	1.20E-02
13	GO:0030136: clathrin-coated vesicle	1.43E-02
14	GO:0005770: late endosome	1.60E-02
15	GO:0005618: cell wall	2.01E-02
16	GO:0032580: Golgi cisterna membrane	2.13E-02
17	GO:0005778: peroxisomal membrane	2.22E-02
18	GO:0000932: P-body	2.41E-02
19	GO:0005794: Golgi apparatus	3.72E-02
20	GO:0031902: late endosome membrane	3.89E-02
21	GO:0090406: pollen tube	4.13E-02
22	GO:0016020: membrane	4.28E-02