co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G61870

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080180: 2-methylguanosine metabolic process	0.00E+00
2	GO:0043928: exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	0.00E+00
3	GO:0071035: nuclear polyadenylation-dependent rRNA catabolic process	0.00E+00
4	GO:0000495: box H/ACA snoRNA 3'-end processing	0.00E+00
5	GO:0071038: nuclear polyadenylation-dependent tRNA catabolic process	0.00E+00
6	GO:0071034: CUT catabolic process	0.00E+00
7	GO:0008612: peptidyl-lysine modification to peptidyl-hypusine	0.00E+00
8	GO:0000467: exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
9	GO:0071049: nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription	0.00E+00
10	GO:0071731: response to nitric oxide	0.00E+00
11	GO:0090069: regulation of ribosome biogenesis	0.00E+00
12	GO:1902184: negative regulation of shoot apical meristem development	0.00E+00
13	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
14	GO:1990481: mRNA pseudouridine synthesis	0.00E+00
15	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
16	GO:0006364: rRNA processing	2.75E-13
17	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.70E-07
18	GO:0009553: embryo sac development	2.95E-06
19	GO:0000460: maturation of 5.8S rRNA	1.09E-05
20	GO:0000028: ribosomal small subunit assembly	6.75E-05
21	GO:0031120: snRNA pseudouridine synthesis	1.12E-04
22	GO:0000469: cleavage involved in rRNA processing	1.12E-04
23	GO:0031118: rRNA pseudouridine synthesis	1.12E-04
24	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	1.12E-04
25	GO:0030490: maturation of SSU-rRNA	1.12E-04
26	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	1.12E-04
27	GO:2000232: regulation of rRNA processing	1.12E-04
28	GO:0043985: histone H4-R3 methylation	1.12E-04
29	GO:0080009: mRNA methylation	2.61E-04
30	GO:0045041: protein import into mitochondrial intermembrane space	2.61E-04
31	GO:0071051: polyadenylation-dependent snoRNA 3'-end processing	2.61E-04
32	GO:0060149: negative regulation of posttranscriptional gene silencing	2.61E-04
33	GO:0034470: ncRNA processing	2.61E-04
34	GO:0034475: U4 snRNA 3'-end processing	2.61E-04
35	GO:0042254: ribosome biogenesis	3.48E-04
36	GO:0006421: asparaginyl-tRNA aminoacylation	4.32E-04
37	GO:0042780: tRNA 3'-end processing	4.32E-04
38	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	4.32E-04
39	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	4.32E-04
40	GO:0045604: regulation of epidermal cell differentiation	4.32E-04
41	GO:0007005: mitochondrion organization	4.96E-04
42	GO:0007276: gamete generation	6.19E-04
43	GO:0051131: chaperone-mediated protein complex assembly	6.19E-04
44	GO:0010501: RNA secondary structure unwinding	6.82E-04
45	GO:0006479: protein methylation	8.23E-04
46	GO:1900864: mitochondrial RNA modification	8.23E-04
47	GO:0046345: abscisic acid catabolic process	8.23E-04
48	GO:0042273: ribosomal large subunit biogenesis	8.23E-04
49	GO:0000380: alternative mRNA splicing, via spliceosome	1.04E-03
50	GO:0010375: stomatal complex patterning	1.04E-03
51	GO:0000470: maturation of LSU-rRNA	1.27E-03
52	GO:0000741: karyogamy	1.27E-03
53	GO:0009451: RNA modification	1.30E-03
54	GO:0006458: 'de novo' protein folding	1.52E-03
55	GO:0030488: tRNA methylation	1.52E-03
56	GO:0048444: floral organ morphogenesis	1.52E-03
57	GO:0010077: maintenance of inflorescence meristem identity	1.52E-03
58	GO:0042026: protein refolding	1.52E-03
59	GO:0006400: tRNA modification	1.78E-03
60	GO:0010374: stomatal complex development	1.78E-03
61	GO:0045995: regulation of embryonic development	1.78E-03
62	GO:0001522: pseudouridine synthesis	2.06E-03
63	GO:0042255: ribosome assembly	2.06E-03
64	GO:2000024: regulation of leaf development	2.66E-03
65	GO:0000387: spliceosomal snRNP assembly	2.97E-03
66	GO:1900865: chloroplast RNA modification	2.97E-03
67	GO:0046686: response to cadmium ion	3.03E-03
68	GO:0006417: regulation of translation	3.97E-03
69	GO:0010582: floral meristem determinacy	4.00E-03
70	GO:0032259: methylation	4.46E-03
71	GO:0010030: positive regulation of seed germination	5.13E-03
72	GO:0006396: RNA processing	5.25E-03
73	GO:0030150: protein import into mitochondrial matrix	5.93E-03
74	GO:0051302: regulation of cell division	6.35E-03
75	GO:0061077: chaperone-mediated protein folding	6.78E-03
76	GO:0009561: megagametogenesis	8.13E-03
77	GO:0070417: cellular response to cold	8.60E-03
78	GO:0000413: protein peptidyl-prolyl isomerization	9.08E-03
79	GO:0010197: polar nucleus fusion	9.57E-03
80	GO:0048825: cotyledon development	1.06E-02
81	GO:0006950: response to stress	1.62E-02
82	GO:0006414: translational elongation	1.62E-02
83	GO:0016049: cell growth	1.68E-02
84	GO:0048527: lateral root development	1.93E-02
85	GO:0045892: negative regulation of transcription, DNA-templated	2.06E-02
86	GO:0009793: embryo development ending in seed dormancy	2.09E-02
87	GO:0000154: rRNA modification	2.67E-02
88	GO:0016569: covalent chromatin modification	3.75E-02
89	GO:0000398: mRNA splicing, via spliceosome	4.33E-02
90	GO:0009555: pollen development	4.43E-02
91	GO:0051301: cell division	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0034038: deoxyhypusine synthase activity	0.00E+00
2	GO:0016018: cyclosporin A binding	0.00E+00
3	GO:0003963: RNA-3'-phosphate cyclase activity	0.00E+00
4	GO:0004164: diphthine synthase activity	0.00E+00
5	GO:0003723: RNA binding	3.57E-14
6	GO:0000166: nucleotide binding	3.31E-12
7	GO:0043021: ribonucleoprotein complex binding	6.45E-07
8	GO:0070181: small ribosomal subunit rRNA binding	2.44E-06
9	GO:0008026: ATP-dependent helicase activity	3.71E-06
10	GO:0030515: snoRNA binding	5.19E-05
11	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	1.12E-04
12	GO:0004004: ATP-dependent RNA helicase activity	1.22E-04
13	GO:0003746: translation elongation factor activity	1.97E-04
14	GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters	2.61E-04
15	GO:0008168: methyltransferase activity	3.17E-04
16	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.12E-04
17	GO:0004816: asparagine-tRNA ligase activity	4.32E-04
18	GO:0042781: 3'-tRNA processing endoribonuclease activity	4.32E-04
19	GO:0048027: mRNA 5'-UTR binding	6.19E-04
20	GO:0004527: exonuclease activity	7.34E-04
21	GO:0004519: endonuclease activity	9.67E-04
22	GO:0008173: RNA methyltransferase activity	2.35E-03
23	GO:0001055: RNA polymerase II activity	2.97E-03
24	GO:0001054: RNA polymerase I activity	3.65E-03
25	GO:0044183: protein binding involved in protein folding	3.65E-03
26	GO:0004521: endoribonuclease activity	4.00E-03
27	GO:0001056: RNA polymerase III activity	4.00E-03
28	GO:0009982: pseudouridine synthase activity	4.36E-03
29	GO:0051082: unfolded protein binding	5.09E-03
30	GO:0004407: histone deacetylase activity	5.93E-03
31	GO:0003713: transcription coactivator activity	9.57E-03
32	GO:0003729: mRNA binding	1.08E-02
33	GO:0004721: phosphoprotein phosphatase activity	1.62E-02
34	GO:0003676: nucleic acid binding	1.64E-02
35	GO:0003735: structural constituent of ribosome	1.67E-02
36	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.68E-02
37	GO:0016787: hydrolase activity	1.86E-02
38	GO:0050897: cobalt ion binding	1.93E-02
39	GO:0000987: core promoter proximal region sequence-specific DNA binding	2.12E-02
40	GO:0003924: GTPase activity	2.51E-02
41	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.75E-02
42	GO:0019843: rRNA binding	4.59E-02

Rank	GO Term	Adjusted P value
1	GO:0034455: t-UTP complex	0.00E+00
2	GO:0036396: MIS complex	0.00E+00
3	GO:0070545: PeBoW complex	0.00E+00
4	GO:0005730: nucleolus	5.62E-28
5	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.23E-10
6	GO:0030687: preribosome, large subunit precursor	4.44E-07
7	GO:0005634: nucleus	1.88E-06
8	GO:0032040: small-subunit processome	4.46E-06
9	GO:0005834: heterotrimeric G-protein complex	4.86E-05
10	GO:0005654: nucleoplasm	8.82E-05
11	GO:0005763: mitochondrial small ribosomal subunit	1.05E-04
12	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	1.12E-04
13	GO:0030688: preribosome, small subunit precursor	1.12E-04
14	GO:0005759: mitochondrial matrix	1.39E-04
15	GO:0000177: cytoplasmic exosome (RNase complex)	2.61E-04
16	GO:0000176: nuclear exosome (RNase complex)	4.32E-04
17	GO:0031429: box H/ACA snoRNP complex	6.19E-04
18	GO:0005844: polysome	8.23E-04
19	GO:0031428: box C/D snoRNP complex	1.27E-03
20	GO:0034399: nuclear periphery	2.06E-03
21	GO:0005736: DNA-directed RNA polymerase I complex	2.66E-03
22	GO:0005666: DNA-directed RNA polymerase III complex	2.97E-03
23	GO:0000418: DNA-directed RNA polymerase IV complex	3.30E-03
24	GO:0005665: DNA-directed RNA polymerase II, core complex	4.00E-03
25	GO:0005747: mitochondrial respiratory chain complex I	4.38E-03
26	GO:0000419: DNA-directed RNA polymerase V complex	5.52E-03
27	GO:0015935: small ribosomal subunit	6.78E-03
28	GO:0005744: mitochondrial inner membrane presequence translocase complex	8.13E-03
29	GO:0022627: cytosolic small ribosomal subunit	1.17E-02
30	GO:0030529: intracellular ribonucleoprotein complex	1.44E-02
31	GO:0005618: cell wall	1.54E-02
32	GO:0015934: large ribosomal subunit	1.93E-02
33	GO:0005739: mitochondrion	2.35E-02
34	GO:0005681: spliceosomal complex	3.43E-02
35	GO:0016607: nuclear speck	3.51E-02
36	GO:0005774: vacuolar membrane	3.77E-02
37	GO:0009543: chloroplast thylakoid lumen	4.59E-02
38	GO:0009506: plasmodesma	4.76E-02