co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G60950

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
2	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
3	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
4	GO:0098586: cellular response to virus	0.00E+00
5	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
6	GO:0042821: pyridoxal biosynthetic process	0.00E+00
7	GO:0042820: vitamin B6 catabolic process	0.00E+00
8	GO:0015882: L-ascorbic acid transport	0.00E+00
9	GO:1901965: endoplasmic reticulum to chloroplast transport	0.00E+00
10	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
11	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
12	GO:0051246: regulation of protein metabolic process	0.00E+00
13	GO:0008298: intracellular mRNA localization	0.00E+00
14	GO:0009658: chloroplast organization	3.71E-08
15	GO:0048564: photosystem I assembly	5.72E-08
16	GO:0015979: photosynthesis	2.18E-06
17	GO:0015995: chlorophyll biosynthetic process	2.88E-06
18	GO:0080005: photosystem stoichiometry adjustment	3.29E-06
19	GO:0018298: protein-chromophore linkage	3.77E-06
20	GO:0090391: granum assembly	1.18E-05
21	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.67E-05
22	GO:0016123: xanthophyll biosynthetic process	7.68E-05
23	GO:0016120: carotene biosynthetic process	7.68E-05
24	GO:0010190: cytochrome b6f complex assembly	1.12E-04
25	GO:0010362: negative regulation of anion channel activity by blue light	2.68E-04
26	GO:0009443: pyridoxal 5'-phosphate salvage	2.68E-04
27	GO:0033506: glucosinolate biosynthetic process from homomethionine	2.68E-04
28	GO:1904966: positive regulation of vitamin E biosynthetic process	2.68E-04
29	GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.68E-04
30	GO:0071277: cellular response to calcium ion	2.68E-04
31	GO:1990052: ER to chloroplast lipid transport	2.68E-04
32	GO:0071806: protein transmembrane transport	2.68E-04
33	GO:1904964: positive regulation of phytol biosynthetic process	2.68E-04
34	GO:0042371: vitamin K biosynthetic process	2.68E-04
35	GO:0071454: cellular response to anoxia	2.68E-04
36	GO:0071461: cellular response to redox state	2.68E-04
37	GO:0006436: tryptophanyl-tRNA aminoacylation	2.68E-04
38	GO:1902458: positive regulation of stomatal opening	2.68E-04
39	GO:0010028: xanthophyll cycle	2.68E-04
40	GO:0009657: plastid organization	3.14E-04
41	GO:0032544: plastid translation	3.14E-04
42	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.89E-04
43	GO:0080153: negative regulation of reductive pentose-phosphate cycle	5.89E-04
44	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.89E-04
45	GO:0046741: transport of virus in host, tissue to tissue	5.89E-04
46	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.89E-04
47	GO:2000030: regulation of response to red or far red light	5.89E-04
48	GO:0048314: embryo sac morphogenesis	5.89E-04
49	GO:0030187: melatonin biosynthetic process	5.89E-04
50	GO:0034755: iron ion transmembrane transport	5.89E-04
51	GO:0006435: threonyl-tRNA aminoacylation	5.89E-04
52	GO:0000256: allantoin catabolic process	5.89E-04
53	GO:0080183: response to photooxidative stress	5.89E-04
54	GO:0009773: photosynthetic electron transport in photosystem I	6.07E-04
55	GO:0009735: response to cytokinin	7.73E-04
56	GO:0010207: photosystem II assembly	8.84E-04
57	GO:0019253: reductive pentose-phosphate cycle	8.84E-04
58	GO:0009853: photorespiration	9.53E-04
59	GO:0009637: response to blue light	9.53E-04
60	GO:0009405: pathogenesis	9.55E-04
61	GO:0010136: ureide catabolic process	9.55E-04
62	GO:0006013: mannose metabolic process	9.55E-04
63	GO:0006696: ergosterol biosynthetic process	9.55E-04
64	GO:0010114: response to red light	1.31E-03
65	GO:0007017: microtubule-based process	1.33E-03
66	GO:0009768: photosynthesis, light harvesting in photosystem I	1.33E-03
67	GO:0071484: cellular response to light intensity	1.36E-03
68	GO:0051085: chaperone mediated protein folding requiring cofactor	1.36E-03
69	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.36E-03
70	GO:0090307: mitotic spindle assembly	1.36E-03
71	GO:0006809: nitric oxide biosynthetic process	1.36E-03
72	GO:0006145: purine nucleobase catabolic process	1.36E-03
73	GO:0046739: transport of virus in multicellular host	1.36E-03
74	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	1.36E-03
75	GO:0043572: plastid fission	1.36E-03
76	GO:0006986: response to unfolded protein	1.36E-03
77	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.36E-03
78	GO:2001141: regulation of RNA biosynthetic process	1.36E-03
79	GO:0009644: response to high light intensity	1.44E-03
80	GO:0009765: photosynthesis, light harvesting	1.83E-03
81	GO:0031122: cytoplasmic microtubule organization	1.83E-03
82	GO:0006021: inositol biosynthetic process	1.83E-03
83	GO:0009902: chloroplast relocation	1.83E-03
84	GO:0009306: protein secretion	1.89E-03
85	GO:0006364: rRNA processing	1.91E-03
86	GO:0016117: carotenoid biosynthetic process	2.05E-03
87	GO:0008033: tRNA processing	2.21E-03
88	GO:0010117: photoprotection	2.33E-03
89	GO:0045038: protein import into chloroplast thylakoid membrane	2.33E-03
90	GO:0035434: copper ion transmembrane transport	2.33E-03
91	GO:0055114: oxidation-reduction process	2.71E-03
92	GO:0042549: photosystem II stabilization	2.88E-03
93	GO:0046855: inositol phosphate dephosphorylation	2.88E-03
94	GO:0050665: hydrogen peroxide biosynthetic process	2.88E-03
95	GO:0010193: response to ozone	2.94E-03
96	GO:0080167: response to karrikin	3.04E-03
97	GO:0019761: glucosinolate biosynthetic process	3.14E-03
98	GO:0015977: carbon fixation	3.46E-03
99	GO:0009854: oxidative photosynthetic carbon pathway	3.46E-03
100	GO:0010019: chloroplast-nucleus signaling pathway	3.46E-03
101	GO:0009772: photosynthetic electron transport in photosystem II	4.08E-03
102	GO:1900056: negative regulation of leaf senescence	4.08E-03
103	GO:0010196: nonphotochemical quenching	4.08E-03
104	GO:0009645: response to low light intensity stimulus	4.08E-03
105	GO:0006401: RNA catabolic process	4.08E-03
106	GO:0010027: thylakoid membrane organization	4.25E-03
107	GO:0006402: mRNA catabolic process	4.73E-03
108	GO:0009642: response to light intensity	4.73E-03
109	GO:0042255: ribosome assembly	4.73E-03
110	GO:0006353: DNA-templated transcription, termination	4.73E-03
111	GO:0006605: protein targeting	4.73E-03
112	GO:0009704: de-etiolation	4.73E-03
113	GO:2000070: regulation of response to water deprivation	4.73E-03
114	GO:0071482: cellular response to light stimulus	5.42E-03
115	GO:0009407: toxin catabolic process	6.11E-03
116	GO:0010218: response to far red light	6.11E-03
117	GO:0098656: anion transmembrane transport	6.14E-03
118	GO:0009821: alkaloid biosynthetic process	6.14E-03
119	GO:0090333: regulation of stomatal closure	6.14E-03
120	GO:0000373: Group II intron splicing	6.14E-03
121	GO:0009638: phototropism	6.90E-03
122	GO:0009098: leucine biosynthetic process	6.90E-03
123	GO:0010380: regulation of chlorophyll biosynthetic process	6.90E-03
124	GO:0031425: chloroplast RNA processing	6.90E-03
125	GO:0006949: syncytium formation	7.68E-03
126	GO:0006259: DNA metabolic process	7.68E-03
127	GO:0045036: protein targeting to chloroplast	7.68E-03
128	GO:0006810: transport	7.89E-03
129	GO:0006265: DNA topological change	8.50E-03
130	GO:0043085: positive regulation of catalytic activity	8.50E-03
131	GO:0006879: cellular iron ion homeostasis	8.50E-03
132	GO:0006352: DNA-templated transcription, initiation	8.50E-03
133	GO:0009744: response to sucrose	9.06E-03
134	GO:0006790: sulfur compound metabolic process	9.35E-03
135	GO:0045037: protein import into chloroplast stroma	9.35E-03
136	GO:0009725: response to hormone	1.02E-02
137	GO:0009767: photosynthetic electron transport chain	1.02E-02
138	GO:0009636: response to toxic substance	1.02E-02
139	GO:0034605: cellular response to heat	1.11E-02
140	GO:0010020: chloroplast fission	1.11E-02
141	GO:0019853: L-ascorbic acid biosynthetic process	1.21E-02
142	GO:0090351: seedling development	1.21E-02
143	GO:0046854: phosphatidylinositol phosphorylation	1.21E-02
144	GO:0006863: purine nucleobase transport	1.30E-02
145	GO:0080147: root hair cell development	1.40E-02
146	GO:0051302: regulation of cell division	1.50E-02
147	GO:0006418: tRNA aminoacylation for protein translation	1.50E-02
148	GO:0006825: copper ion transport	1.50E-02
149	GO:0051321: meiotic cell cycle	1.61E-02
150	GO:0009553: embryo sac development	1.69E-02
151	GO:0016226: iron-sulfur cluster assembly	1.71E-02
152	GO:0080092: regulation of pollen tube growth	1.71E-02
153	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.82E-02
154	GO:0009793: embryo development ending in seed dormancy	1.89E-02
155	GO:0009409: response to cold	2.03E-02
156	GO:0070417: cellular response to cold	2.05E-02
157	GO:0010118: stomatal movement	2.17E-02
158	GO:0000413: protein peptidyl-prolyl isomerization	2.17E-02
159	GO:0048868: pollen tube development	2.29E-02
160	GO:0007059: chromosome segregation	2.41E-02
161	GO:0015986: ATP synthesis coupled proton transport	2.41E-02
162	GO:0006814: sodium ion transport	2.41E-02
163	GO:0009791: post-embryonic development	2.53E-02
164	GO:0000302: response to reactive oxygen species	2.65E-02
165	GO:0016032: viral process	2.78E-02
166	GO:0032502: developmental process	2.78E-02
167	GO:0006413: translational initiation	2.82E-02
168	GO:0007623: circadian rhythm	3.02E-02
169	GO:0009828: plant-type cell wall loosening	3.04E-02
170	GO:0010286: heat acclimation	3.18E-02
171	GO:0009816: defense response to bacterium, incompatible interaction	3.59E-02
172	GO:0042128: nitrate assimilation	3.73E-02
173	GO:0009817: defense response to fungus, incompatible interaction	4.17E-02
174	GO:0048481: plant ovule development	4.17E-02
175	GO:0000160: phosphorelay signal transduction system	4.32E-02
176	GO:0009910: negative regulation of flower development	4.62E-02
177	GO:0007568: aging	4.62E-02
178	GO:0042254: ribosome biogenesis	4.74E-02
179	GO:0000724: double-strand break repair via homologous recombination	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
2	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
3	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
4	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
5	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
6	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
7	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
8	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
9	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
10	GO:0046905: phytoene synthase activity	0.00E+00
11	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
12	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
13	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
14	GO:0019899: enzyme binding	3.90E-06
15	GO:0016168: chlorophyll binding	4.68E-05
16	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.83E-05
17	GO:0019843: rRNA binding	9.97E-05
18	GO:0046906: tetrapyrrole binding	2.68E-04
19	GO:0051996: squalene synthase activity	2.68E-04
20	GO:0080105: 6-methylthiopropyl glucosinolate S-oxygenase activity	2.68E-04
21	GO:0004830: tryptophan-tRNA ligase activity	2.68E-04
22	GO:0030941: chloroplast targeting sequence binding	2.68E-04
23	GO:0004654: polyribonucleotide nucleotidyltransferase activity	2.68E-04
24	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.68E-04
25	GO:0048038: quinone binding	3.12E-04
26	GO:0009977: proton motive force dependent protein transmembrane transporter activity	5.89E-04
27	GO:0080102: 3-methylthiopropyl glucosinolate S-oxygenase activity	5.89E-04
28	GO:0052832: inositol monophosphate 3-phosphatase activity	5.89E-04
29	GO:0080104: 5-methylthiopropyl glucosinolate S-oxygenase activity	5.89E-04
30	GO:0008934: inositol monophosphate 1-phosphatase activity	5.89E-04
31	GO:0052833: inositol monophosphate 4-phosphatase activity	5.89E-04
32	GO:0004829: threonine-tRNA ligase activity	5.89E-04
33	GO:0080106: 7-methylthiopropyl glucosinolate S-oxygenase activity	5.89E-04
34	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.89E-04
35	GO:0003862: 3-isopropylmalate dehydrogenase activity	5.89E-04
36	GO:0005089: Rho guanyl-nucleotide exchange factor activity	6.07E-04
37	GO:0032947: protein complex scaffold	9.55E-04
38	GO:0004148: dihydrolipoyl dehydrogenase activity	9.55E-04
39	GO:0080103: 4-methylthiopropyl glucosinolate S-oxygenase activity	9.55E-04
40	GO:0004751: ribose-5-phosphate isomerase activity	9.55E-04
41	GO:0070402: NADPH binding	9.55E-04
42	GO:0031409: pigment binding	1.10E-03
43	GO:0005528: FK506 binding	1.21E-03
44	GO:0016984: ribulose-bisphosphate carboxylase activity	1.36E-03
45	GO:0008508: bile acid:sodium symporter activity	1.36E-03
46	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.36E-03
47	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.36E-03
48	GO:0080107: 8-methylthiopropyl glucosinolate S-oxygenase activity	1.36E-03
49	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.36E-03
50	GO:0016851: magnesium chelatase activity	1.36E-03
51	GO:0009882: blue light photoreceptor activity	1.36E-03
52	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.59E-03
53	GO:0022891: substrate-specific transmembrane transporter activity	1.74E-03
54	GO:0005319: lipid transporter activity	1.83E-03
55	GO:0051861: glycolipid binding	1.83E-03
56	GO:0008453: alanine-glyoxylate transaminase activity	1.83E-03
57	GO:0016987: sigma factor activity	1.83E-03
58	GO:0043015: gamma-tubulin binding	1.83E-03
59	GO:0043495: protein anchor	1.83E-03
60	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.83E-03
61	GO:0008891: glycolate oxidase activity	1.83E-03
62	GO:0001053: plastid sigma factor activity	1.83E-03
63	GO:0003727: single-stranded RNA binding	1.89E-03
64	GO:0051011: microtubule minus-end binding	2.33E-03
65	GO:0008080: N-acetyltransferase activity	2.39E-03
66	GO:0010181: FMN binding	2.56E-03
67	GO:0015631: tubulin binding	3.46E-03
68	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.46E-03
69	GO:0004559: alpha-mannosidase activity	3.46E-03
70	GO:0004033: aldo-keto reductase (NADP) activity	4.73E-03
71	GO:0005375: copper ion transmembrane transporter activity	5.42E-03
72	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	5.42E-03
73	GO:0016491: oxidoreductase activity	6.38E-03
74	GO:0005381: iron ion transmembrane transporter activity	6.90E-03
75	GO:0016844: strictosidine synthase activity	6.90E-03
76	GO:0004364: glutathione transferase activity	8.70E-03
77	GO:0000175: 3'-5'-exoribonuclease activity	1.02E-02
78	GO:0005315: inorganic phosphate transmembrane transporter activity	1.02E-02
79	GO:0000155: phosphorelay sensor kinase activity	1.02E-02
80	GO:0051536: iron-sulfur cluster binding	1.40E-02
81	GO:0051087: chaperone binding	1.50E-02
82	GO:0043424: protein histidine kinase binding	1.50E-02
83	GO:0005345: purine nucleobase transmembrane transporter activity	1.50E-02
84	GO:0004176: ATP-dependent peptidase activity	1.61E-02
85	GO:0008514: organic anion transmembrane transporter activity	1.94E-02
86	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.94E-02
87	GO:0004812: aminoacyl-tRNA ligase activity	2.05E-02
88	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.29E-02
89	GO:0016853: isomerase activity	2.41E-02
90	GO:0004872: receptor activity	2.53E-02
91	GO:0008565: protein transporter activity	2.62E-02
92	GO:0005200: structural constituent of cytoskeleton	3.18E-02
93	GO:0003743: translation initiation factor activity	3.53E-02
94	GO:0005506: iron ion binding	3.65E-02
95	GO:0042802: identical protein binding	3.83E-02
96	GO:0050897: cobalt ion binding	4.62E-02
97	GO:0003746: translation elongation factor activity	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	7.08E-53
2	GO:0009535: chloroplast thylakoid membrane	1.75E-37
3	GO:0009941: chloroplast envelope	7.23E-20
4	GO:0009534: chloroplast thylakoid	1.26E-15
5	GO:0009579: thylakoid	3.39E-13
6	GO:0009570: chloroplast stroma	2.92E-12
7	GO:0009543: chloroplast thylakoid lumen	2.81E-08
8	GO:0031969: chloroplast membrane	1.32E-06
9	GO:0033281: TAT protein transport complex	1.18E-05
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.19E-05
11	GO:0009523: photosystem II	1.72E-05
12	GO:0030286: dynein complex	4.83E-05
13	GO:0009706: chloroplast inner membrane	6.12E-05
14	GO:0009654: photosystem II oxygen evolving complex	9.96E-05
15	GO:0031977: thylakoid lumen	1.47E-04
16	GO:0009782: photosystem I antenna complex	2.68E-04
17	GO:0009515: granal stacked thylakoid	2.68E-04
18	GO:0008274: gamma-tubulin ring complex	5.89E-04
19	GO:0010287: plastoglobule	6.41E-04
20	GO:0009707: chloroplast outer membrane	7.09E-04
21	GO:0030095: chloroplast photosystem II	8.84E-04
22	GO:0009528: plastid inner membrane	9.55E-04
23	GO:0009573: chloroplast ribulose bisphosphate carboxylase complex	9.55E-04
24	GO:0010007: magnesium chelatase complex	9.55E-04
25	GO:0042651: thylakoid membrane	1.33E-03
26	GO:0000923: equatorial microtubule organizing center	1.36E-03
27	GO:0009536: plastid	1.72E-03
28	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.83E-03
29	GO:0019898: extrinsic component of membrane	2.75E-03
30	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.88E-03
31	GO:0009295: nucleoid	3.78E-03
32	GO:0009533: chloroplast stromal thylakoid	4.08E-03
33	GO:0031359: integral component of chloroplast outer membrane	4.08E-03
34	GO:0009539: photosystem II reaction center	5.42E-03
35	GO:0000922: spindle pole	6.14E-03
36	GO:0016324: apical plasma membrane	7.68E-03
37	GO:0009508: plastid chromosome	1.02E-02
38	GO:0016021: integral component of membrane	1.15E-02
39	GO:0030076: light-harvesting complex	1.21E-02
40	GO:0043234: protein complex	1.30E-02
41	GO:0005875: microtubule associated complex	1.30E-02
42	GO:0005747: mitochondrial respiratory chain complex I	1.50E-02
43	GO:0045271: respiratory chain complex I	1.50E-02
44	GO:0005623: cell	2.25E-02
45	GO:0009522: photosystem I	2.41E-02
46	GO:0005759: mitochondrial matrix	2.75E-02
47	GO:0010319: stromule	3.18E-02
48	GO:0005778: peroxisomal membrane	3.18E-02
49	GO:0005840: ribosome	3.99E-02
50	GO:0048046: apoplast	4.37E-02
51	GO:0015934: large ribosomal subunit	4.62E-02