Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G60600

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0061635: regulation of protein complex stability0.00E+00
2GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
3GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
4GO:0005996: monosaccharide metabolic process0.00E+00
5GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
6GO:0006114: glycerol biosynthetic process0.00E+00
7GO:0018023: peptidyl-lysine trimethylation0.00E+00
8GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
9GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
10GO:0070125: mitochondrial translational elongation0.00E+00
11GO:0006429: leucyl-tRNA aminoacylation0.00E+00
12GO:2000505: regulation of energy homeostasis0.00E+00
13GO:0015979: photosynthesis4.44E-09
14GO:0010027: thylakoid membrane organization4.80E-09
15GO:0010196: nonphotochemical quenching7.05E-08
16GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.04E-07
17GO:0010206: photosystem II repair3.43E-07
18GO:0009773: photosynthetic electron transport in photosystem I1.10E-06
19GO:0010207: photosystem II assembly2.76E-06
20GO:0018026: peptidyl-lysine monomethylation5.21E-06
21GO:0090391: granum assembly1.84E-05
22GO:0006021: inositol biosynthetic process7.23E-05
23GO:0010021: amylopectin biosynthetic process7.23E-05
24GO:0018298: protein-chromophore linkage1.32E-04
25GO:0046855: inositol phosphate dephosphorylation1.63E-04
26GO:0042549: photosystem II stabilization1.63E-04
27GO:0006418: tRNA aminoacylation for protein translation1.65E-04
28GO:0061077: chaperone-mediated protein folding1.89E-04
29GO:0000476: maturation of 4.5S rRNA3.40E-04
30GO:0000967: rRNA 5'-end processing3.40E-04
31GO:0006438: valyl-tRNA aminoacylation3.40E-04
32GO:0043953: protein transport by the Tat complex3.40E-04
33GO:1904966: positive regulation of vitamin E biosynthetic process3.40E-04
34GO:0000481: maturation of 5S rRNA3.40E-04
35GO:1904964: positive regulation of phytol biosynthetic process3.40E-04
36GO:0065002: intracellular protein transmembrane transport3.40E-04
37GO:0043686: co-translational protein modification3.40E-04
38GO:0043609: regulation of carbon utilization3.40E-04
39GO:0046167: glycerol-3-phosphate biosynthetic process3.40E-04
40GO:0043007: maintenance of rDNA3.40E-04
41GO:1902458: positive regulation of stomatal opening3.40E-04
42GO:0034337: RNA folding3.40E-04
43GO:0006419: alanyl-tRNA aminoacylation3.40E-04
44GO:0005978: glycogen biosynthetic process3.64E-04
45GO:0048564: photosystem I assembly3.64E-04
46GO:0009657: plastid organization4.45E-04
47GO:0032544: plastid translation4.45E-04
48GO:0019252: starch biosynthetic process4.50E-04
49GO:0006810: transport6.27E-04
50GO:1902326: positive regulation of chlorophyll biosynthetic process7.40E-04
51GO:0035304: regulation of protein dephosphorylation7.40E-04
52GO:0019388: galactose catabolic process7.40E-04
53GO:0006650: glycerophospholipid metabolic process7.40E-04
54GO:0006432: phenylalanyl-tRNA aminoacylation7.40E-04
55GO:0097054: L-glutamate biosynthetic process7.40E-04
56GO:1903426: regulation of reactive oxygen species biosynthetic process7.40E-04
57GO:0080181: lateral root branching7.40E-04
58GO:0034470: ncRNA processing7.40E-04
59GO:0019684: photosynthesis, light reaction8.49E-04
60GO:0015995: chlorophyll biosynthetic process9.63E-04
61GO:0006790: sulfur compound metabolic process9.69E-04
62GO:0016311: dephosphorylation1.03E-03
63GO:0006006: glucose metabolic process1.10E-03
64GO:0006000: fructose metabolic process1.20E-03
65GO:0046168: glycerol-3-phosphate catabolic process1.20E-03
66GO:0005977: glycogen metabolic process1.20E-03
67GO:0046854: phosphatidylinositol phosphorylation1.38E-03
68GO:0006072: glycerol-3-phosphate metabolic process1.72E-03
69GO:0006537: glutamate biosynthetic process1.72E-03
70GO:0009052: pentose-phosphate shunt, non-oxidative branch1.72E-03
71GO:0009590: detection of gravity1.72E-03
72GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.72E-03
73GO:0006020: inositol metabolic process1.72E-03
74GO:0071484: cellular response to light intensity1.72E-03
75GO:0009768: photosynthesis, light harvesting in photosystem I1.88E-03
76GO:0009793: embryo development ending in seed dormancy2.03E-03
77GO:0045727: positive regulation of translation2.31E-03
78GO:0015994: chlorophyll metabolic process2.31E-03
79GO:0006546: glycine catabolic process2.31E-03
80GO:0019676: ammonia assimilation cycle2.31E-03
81GO:0015976: carbon utilization2.31E-03
82GO:0051781: positive regulation of cell division2.31E-03
83GO:0009765: photosynthesis, light harvesting2.31E-03
84GO:0006109: regulation of carbohydrate metabolic process2.31E-03
85GO:0016117: carotenoid biosynthetic process2.90E-03
86GO:0000304: response to singlet oxygen2.96E-03
87GO:0016558: protein import into peroxisome matrix2.96E-03
88GO:0032543: mitochondrial translation2.96E-03
89GO:0006564: L-serine biosynthetic process2.96E-03
90GO:0045038: protein import into chloroplast thylakoid membrane2.96E-03
91GO:0031365: N-terminal protein amino acid modification2.96E-03
92GO:0016123: xanthophyll biosynthetic process2.96E-03
93GO:0006364: rRNA processing2.97E-03
94GO:0042631: cellular response to water deprivation3.13E-03
95GO:0042793: transcription from plastid promoter3.65E-03
96GO:0010190: cytochrome b6f complex assembly3.65E-03
97GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.65E-03
98GO:0009658: chloroplast organization3.75E-03
99GO:0042026: protein refolding4.40E-03
100GO:0006458: 'de novo' protein folding4.40E-03
101GO:1901259: chloroplast rRNA processing4.40E-03
102GO:0006400: tRNA modification5.19E-03
103GO:0009642: response to light intensity6.03E-03
104GO:0032508: DNA duplex unwinding6.03E-03
105GO:2000070: regulation of response to water deprivation6.03E-03
106GO:0000105: histidine biosynthetic process6.03E-03
107GO:0016559: peroxisome fission6.03E-03
108GO:0007186: G-protein coupled receptor signaling pathway6.92E-03
109GO:0017004: cytochrome complex assembly6.92E-03
110GO:0006002: fructose 6-phosphate metabolic process6.92E-03
111GO:0015996: chlorophyll catabolic process6.92E-03
112GO:0006499: N-terminal protein myristoylation8.69E-03
113GO:0005982: starch metabolic process8.82E-03
114GO:0010205: photoinhibition8.82E-03
115GO:0048829: root cap development9.84E-03
116GO:0009089: lysine biosynthetic process via diaminopimelate1.09E-02
117GO:0072593: reactive oxygen species metabolic process1.09E-02
118GO:0009073: aromatic amino acid family biosynthetic process1.09E-02
119GO:0043085: positive regulation of catalytic activity1.09E-02
120GO:0006415: translational termination1.09E-02
121GO:1903507: negative regulation of nucleic acid-templated transcription1.09E-02
122GO:0000272: polysaccharide catabolic process1.09E-02
123GO:0018119: peptidyl-cysteine S-nitrosylation1.09E-02
124GO:0005983: starch catabolic process1.20E-02
125GO:0045037: protein import into chloroplast stroma1.20E-02
126GO:0010628: positive regulation of gene expression1.31E-02
127GO:0010020: chloroplast fission1.43E-02
128GO:0019253: reductive pentose-phosphate cycle1.43E-02
129GO:0006302: double-strand break repair1.43E-02
130GO:0019853: L-ascorbic acid biosynthetic process1.55E-02
131GO:0010030: positive regulation of seed germination1.55E-02
132GO:0000162: tryptophan biosynthetic process1.67E-02
133GO:0008299: isoprenoid biosynthetic process1.93E-02
134GO:0048278: vesicle docking2.07E-02
135GO:0031408: oxylipin biosynthetic process2.07E-02
136GO:0051321: meiotic cell cycle2.07E-02
137GO:0006096: glycolytic process2.07E-02
138GO:2000022: regulation of jasmonic acid mediated signaling pathway2.21E-02
139GO:0019748: secondary metabolic process2.21E-02
140GO:0071369: cellular response to ethylene stimulus2.35E-02
141GO:0009561: megagametogenesis2.49E-02
142GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.64E-02
143GO:0006520: cellular amino acid metabolic process2.94E-02
144GO:0006662: glycerol ether metabolic process2.94E-02
145GO:0010182: sugar mediated signaling pathway2.94E-02
146GO:0061025: membrane fusion3.10E-02
147GO:0006814: sodium ion transport3.10E-02
148GO:0008654: phospholipid biosynthetic process3.25E-02
149GO:0055072: iron ion homeostasis3.25E-02
150GO:0032259: methylation3.31E-02
151GO:0071554: cell wall organization or biogenesis3.42E-02
152GO:0006635: fatty acid beta-oxidation3.42E-02
153GO:0006281: DNA repair3.49E-02
154GO:0006412: translation3.50E-02
155GO:0010583: response to cyclopentenone3.58E-02
156GO:0009409: response to cold3.68E-02
157GO:0009567: double fertilization forming a zygote and endosperm3.92E-02
158GO:0008152: metabolic process3.93E-02
159GO:0006413: translational initiation4.00E-02
160GO:0007623: circadian rhythm4.29E-02
161GO:0006906: vesicle fusion4.80E-02
162GO:0009627: systemic acquired resistance4.80E-02
163GO:0006470: protein dephosphorylation4.89E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
3GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
4GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
5GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
6GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
7GO:0042623: ATPase activity, coupled0.00E+00
8GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
9GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
10GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
11GO:0004823: leucine-tRNA ligase activity0.00E+00
12GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
13GO:0043136: glycerol-3-phosphatase activity0.00E+00
14GO:0000121: glycerol-1-phosphatase activity0.00E+00
15GO:0005528: FK506 binding1.32E-07
16GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor5.92E-07
17GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.99E-06
18GO:0008934: inositol monophosphate 1-phosphatase activity5.21E-06
19GO:0052833: inositol monophosphate 4-phosphatase activity5.21E-06
20GO:0052832: inositol monophosphate 3-phosphatase activity5.21E-06
21GO:0016279: protein-lysine N-methyltransferase activity7.23E-05
22GO:0004045: aminoacyl-tRNA hydrolase activity7.23E-05
23GO:2001070: starch binding1.63E-04
24GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.22E-04
25GO:0004812: aminoacyl-tRNA ligase activity3.04E-04
26GO:0050308: sugar-phosphatase activity3.40E-04
27GO:0004813: alanine-tRNA ligase activity3.40E-04
28GO:0010242: oxygen evolving activity3.40E-04
29GO:0019203: carbohydrate phosphatase activity3.40E-04
30GO:0042586: peptide deformylase activity3.40E-04
31GO:0004832: valine-tRNA ligase activity3.40E-04
32GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.40E-04
33GO:0016041: glutamate synthase (ferredoxin) activity3.40E-04
34GO:0010347: L-galactose-1-phosphate phosphatase activity3.40E-04
35GO:0048038: quinone binding4.92E-04
36GO:0003844: 1,4-alpha-glucan branching enzyme activity7.40E-04
37GO:0004826: phenylalanine-tRNA ligase activity7.40E-04
38GO:0004614: phosphoglucomutase activity7.40E-04
39GO:0019156: isoamylase activity7.40E-04
40GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.40E-04
41GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.40E-04
42GO:0010291: carotene beta-ring hydroxylase activity7.40E-04
43GO:0047746: chlorophyllase activity7.40E-04
44GO:0010297: heteropolysaccharide binding7.40E-04
45GO:0009977: proton motive force dependent protein transmembrane transporter activity7.40E-04
46GO:0004617: phosphoglycerate dehydrogenase activity7.40E-04
47GO:0004047: aminomethyltransferase activity7.40E-04
48GO:0051082: unfolded protein binding8.42E-04
49GO:0016168: chlorophyll binding8.43E-04
50GO:0000049: tRNA binding9.69E-04
51GO:0031072: heat shock protein binding1.10E-03
52GO:0019843: rRNA binding1.18E-03
53GO:0043169: cation binding1.20E-03
54GO:0003913: DNA photolyase activity1.20E-03
55GO:0005504: fatty acid binding1.20E-03
56GO:0002161: aminoacyl-tRNA editing activity1.20E-03
57GO:0004751: ribose-5-phosphate isomerase activity1.20E-03
58GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.20E-03
59GO:0070402: NADPH binding1.20E-03
60GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.20E-03
61GO:0031409: pigment binding1.54E-03
62GO:0016149: translation release factor activity, codon specific1.72E-03
63GO:0016851: magnesium chelatase activity1.72E-03
64GO:0008508: bile acid:sodium symporter activity1.72E-03
65GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.72E-03
66GO:0080032: methyl jasmonate esterase activity2.31E-03
67GO:0045430: chalcone isomerase activity2.31E-03
68GO:0043495: protein anchor2.31E-03
69GO:0051287: NAD binding2.60E-03
70GO:0051538: 3 iron, 4 sulfur cluster binding2.96E-03
71GO:0004556: alpha-amylase activity3.65E-03
72GO:0080030: methyl indole-3-acetate esterase activity3.65E-03
73GO:0004017: adenylate kinase activity4.40E-03
74GO:0009881: photoreceptor activity5.19E-03
75GO:0019899: enzyme binding5.19E-03
76GO:0016597: amino acid binding5.69E-03
77GO:0004033: aldo-keto reductase (NADP) activity6.03E-03
78GO:0043022: ribosome binding6.03E-03
79GO:0008138: protein tyrosine/serine/threonine phosphatase activity7.85E-03
80GO:0003747: translation release factor activity7.85E-03
81GO:0030145: manganese ion binding9.11E-03
82GO:0008047: enzyme activator activity9.84E-03
83GO:0003993: acid phosphatase activity1.05E-02
84GO:0044183: protein binding involved in protein folding1.09E-02
85GO:0042802: identical protein binding1.27E-02
86GO:0004565: beta-galactosidase activity1.31E-02
87GO:0004089: carbonate dehydratase activity1.31E-02
88GO:0051537: 2 iron, 2 sulfur cluster binding1.40E-02
89GO:0008266: poly(U) RNA binding1.43E-02
90GO:0005198: structural molecule activity1.45E-02
91GO:0000287: magnesium ion binding1.60E-02
92GO:0003887: DNA-directed DNA polymerase activity1.67E-02
93GO:0003714: transcription corepressor activity1.80E-02
94GO:0004857: enzyme inhibitor activity1.80E-02
95GO:0008408: 3'-5' exonuclease activity2.07E-02
96GO:0022891: substrate-specific transmembrane transporter activity2.35E-02
97GO:0003756: protein disulfide isomerase activity2.49E-02
98GO:0047134: protein-disulfide reductase activity2.64E-02
99GO:0004722: protein serine/threonine phosphatase activity3.01E-02
100GO:0050662: coenzyme binding3.10E-02
101GO:0004791: thioredoxin-disulfide reductase activity3.10E-02
102GO:0016853: isomerase activity3.10E-02
103GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.20E-02
104GO:0003924: GTPase activity3.49E-02
105GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.75E-02
106GO:0003684: damaged DNA binding3.92E-02
107GO:0008483: transaminase activity4.09E-02
108GO:0016413: O-acetyltransferase activity4.26E-02
109GO:0008017: microtubule binding4.49E-02
110GO:0004721: phosphoprotein phosphatase activity4.98E-02
111GO:0003743: translation initiation factor activity4.99E-02
RankGO TermAdjusted P value
1GO:0010368: chloroplast isoamylase complex0.00E+00
2GO:0009515: granal stacked thylakoid0.00E+00
3GO:0043235: receptor complex0.00E+00
4GO:0009507: chloroplast5.30E-77
5GO:0009535: chloroplast thylakoid membrane3.43E-48
6GO:0009570: chloroplast stroma4.39E-36
7GO:0009534: chloroplast thylakoid1.18E-31
8GO:0009543: chloroplast thylakoid lumen6.19E-21
9GO:0009941: chloroplast envelope8.99E-21
10GO:0009579: thylakoid5.15E-18
11GO:0031977: thylakoid lumen6.60E-11
12GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.38E-09
13GO:0030095: chloroplast photosystem II4.98E-08
14GO:0010287: plastoglobule1.57E-06
15GO:0000427: plastid-encoded plastid RNA polymerase complex5.21E-06
16GO:0009654: photosystem II oxygen evolving complex7.32E-06
17GO:0019898: extrinsic component of membrane3.46E-05
18GO:0042651: thylakoid membrane1.65E-04
19GO:0005840: ribosome2.48E-04
20GO:0031969: chloroplast membrane2.63E-04
21GO:0000791: euchromatin3.40E-04
22GO:0009783: photosystem II antenna complex3.40E-04
23GO:0031361: integral component of thylakoid membrane3.40E-04
24GO:0009538: photosystem I reaction center3.64E-04
25GO:0009522: photosystem I4.11E-04
26GO:0010319: stromule6.78E-04
27GO:0030870: Mre11 complex7.40E-04
28GO:0009508: plastid chromosome1.10E-03
29GO:0009528: plastid inner membrane1.20E-03
30GO:0010007: magnesium chelatase complex1.20E-03
31GO:0033281: TAT protein transport complex1.20E-03
32GO:0009331: glycerol-3-phosphate dehydrogenase complex1.72E-03
33GO:0042646: plastid nucleoid1.72E-03
34GO:0009527: plastid outer membrane2.31E-03
35GO:0000795: synaptonemal complex2.96E-03
36GO:0016272: prefoldin complex4.40E-03
37GO:0009295: nucleoid5.37E-03
38GO:0030529: intracellular ribonucleoprotein complex6.03E-03
39GO:0009501: amyloplast6.03E-03
40GO:0048046: apoplast6.43E-03
41GO:0042644: chloroplast nucleoid7.85E-03
42GO:0009707: chloroplast outer membrane7.88E-03
43GO:0005759: mitochondrial matrix8.31E-03
44GO:0055028: cortical microtubule9.84E-03
45GO:0032040: small-subunit processome1.20E-02
46GO:0030076: light-harvesting complex1.55E-02
47GO:0043234: protein complex1.67E-02
48GO:0009532: plastid stroma2.07E-02
49GO:0009504: cell plate3.25E-02
50GO:0009523: photosystem II3.25E-02
51GO:0000785: chromatin3.58E-02
52GO:0005778: peroxisomal membrane4.09E-02
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Gene type



Gene DE type