co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G60010

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0048856: anatomical structure development	0.00E+00
2	GO:0006907: pinocytosis	0.00E+00
3	GO:0015739: sialic acid transport	0.00E+00
4	GO:0006044: N-acetylglucosamine metabolic process	0.00E+00
5	GO:0009946: proximal/distal axis specification	0.00E+00
6	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
7	GO:0009249: protein lipoylation	0.00E+00
8	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
9	GO:0009583: detection of light stimulus	0.00E+00
10	GO:0010423: negative regulation of brassinosteroid biosynthetic process	0.00E+00
11	GO:0071000: response to magnetism	0.00E+00
12	GO:0046460: neutral lipid biosynthetic process	0.00E+00
13	GO:0046294: formaldehyde catabolic process	0.00E+00
14	GO:0032928: regulation of superoxide anion generation	0.00E+00
15	GO:0009106: lipoate metabolic process	0.00E+00
16	GO:0016576: histone dephosphorylation	0.00E+00
17	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
18	GO:0036172: thiamine salvage	0.00E+00
19	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	7.41E-06
20	GO:0010275: NAD(P)H dehydrogenase complex assembly	7.41E-06
21	GO:0010343: singlet oxygen-mediated programmed cell death	7.41E-06
22	GO:0010117: photoprotection	1.53E-04
23	GO:0000741: karyogamy	2.19E-04
24	GO:0034971: histone H3-R17 methylation	4.07E-04
25	GO:0072387: flavin adenine dinucleotide metabolic process	4.07E-04
26	GO:0042371: vitamin K biosynthetic process	4.07E-04
27	GO:0071454: cellular response to anoxia	4.07E-04
28	GO:0048438: floral whorl development	4.07E-04
29	GO:0034970: histone H3-R2 methylation	4.07E-04
30	GO:0034972: histone H3-R26 methylation	4.07E-04
31	GO:1902265: abscisic acid homeostasis	4.07E-04
32	GO:0022900: electron transport chain	5.80E-04
33	GO:0009451: RNA modification	6.47E-04
34	GO:0015780: nucleotide-sugar transport	6.96E-04
35	GO:0099402: plant organ development	8.83E-04
36	GO:0035335: peptidyl-tyrosine dephosphorylation	8.83E-04
37	GO:0016122: xanthophyll metabolic process	8.83E-04
38	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	8.83E-04
39	GO:0080153: negative regulation of reductive pentose-phosphate cycle	8.83E-04
40	GO:0043039: tRNA aminoacylation	8.83E-04
41	GO:1901529: positive regulation of anion channel activity	8.83E-04
42	GO:0048255: mRNA stabilization	8.83E-04
43	GO:0010617: circadian regulation of calcium ion oscillation	8.83E-04
44	GO:0007154: cell communication	8.83E-04
45	GO:0016126: sterol biosynthetic process	1.10E-03
46	GO:0009658: chloroplast organization	1.34E-03
47	GO:0009150: purine ribonucleotide metabolic process	1.43E-03
48	GO:0071492: cellular response to UV-A	1.43E-03
49	GO:0006696: ergosterol biosynthetic process	1.43E-03
50	GO:0045739: positive regulation of DNA repair	1.43E-03
51	GO:0010476: gibberellin mediated signaling pathway	1.43E-03
52	GO:0010325: raffinose family oligosaccharide biosynthetic process	1.43E-03
53	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	1.43E-03
54	GO:0010338: leaf formation	1.43E-03
55	GO:0031022: nuclear migration along microfilament	1.43E-03
56	GO:1902448: positive regulation of shade avoidance	1.43E-03
57	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	1.43E-03
58	GO:1901672: positive regulation of systemic acquired resistance	1.43E-03
59	GO:0006882: cellular zinc ion homeostasis	2.07E-03
60	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.07E-03
61	GO:1902476: chloride transmembrane transport	2.07E-03
62	GO:0033014: tetrapyrrole biosynthetic process	2.07E-03
63	GO:1901332: negative regulation of lateral root development	2.07E-03
64	GO:0007017: microtubule-based process	2.46E-03
65	GO:1902347: response to strigolactone	2.78E-03
66	GO:0009902: chloroplast relocation	2.78E-03
67	GO:0034613: cellular protein localization	2.78E-03
68	GO:0071486: cellular response to high light intensity	2.78E-03
69	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	2.78E-03
70	GO:0042274: ribosomal small subunit biogenesis	2.78E-03
71	GO:0031935: regulation of chromatin silencing	2.78E-03
72	GO:0009765: photosynthesis, light harvesting	2.78E-03
73	GO:0045088: regulation of innate immune response	2.78E-03
74	GO:0016226: iron-sulfur cluster assembly	2.95E-03
75	GO:0009965: leaf morphogenesis	3.34E-03
76	GO:0046283: anthocyanin-containing compound metabolic process	3.56E-03
77	GO:0009229: thiamine diphosphate biosynthetic process	3.56E-03
78	GO:0009107: lipoate biosynthetic process	3.56E-03
79	GO:0016123: xanthophyll biosynthetic process	3.56E-03
80	GO:0000304: response to singlet oxygen	3.56E-03
81	GO:0016120: carotene biosynthetic process	3.56E-03
82	GO:0016117: carotenoid biosynthetic process	3.80E-03
83	GO:0010304: PSII associated light-harvesting complex II catabolic process	4.41E-03
84	GO:0016070: RNA metabolic process	4.41E-03
85	GO:0006555: methionine metabolic process	4.41E-03
86	GO:0031053: primary miRNA processing	4.41E-03
87	GO:0045962: positive regulation of development, heterochronic	4.41E-03
88	GO:0060918: auxin transport	4.41E-03
89	GO:0006796: phosphate-containing compound metabolic process	4.41E-03
90	GO:0042793: transcription from plastid promoter	4.41E-03
91	GO:1901371: regulation of leaf morphogenesis	4.41E-03
92	GO:0009228: thiamine biosynthetic process	4.41E-03
93	GO:0010197: polar nucleus fusion	4.43E-03
94	GO:0009958: positive gravitropism	4.43E-03
95	GO:0009903: chloroplast avoidance movement	5.31E-03
96	GO:0010019: chloroplast-nucleus signaling pathway	5.31E-03
97	GO:0048444: floral organ morphogenesis	5.31E-03
98	GO:0010310: regulation of hydrogen peroxide metabolic process	5.31E-03
99	GO:0019509: L-methionine salvage from methylthioadenosine	5.31E-03
100	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	5.31E-03
101	GO:0010076: maintenance of floral meristem identity	5.31E-03
102	GO:0034389: lipid particle organization	5.31E-03
103	GO:0017148: negative regulation of translation	5.31E-03
104	GO:0051510: regulation of unidimensional cell growth	6.28E-03
105	GO:1900056: negative regulation of leaf senescence	6.28E-03
106	GO:0006821: chloride transport	6.28E-03
107	GO:0030026: cellular manganese ion homeostasis	6.28E-03
108	GO:0080111: DNA demethylation	6.28E-03
109	GO:0009704: de-etiolation	7.30E-03
110	GO:0007155: cell adhesion	7.30E-03
111	GO:0048564: photosystem I assembly	7.30E-03
112	GO:0045292: mRNA cis splicing, via spliceosome	7.30E-03
113	GO:0010928: regulation of auxin mediated signaling pathway	7.30E-03
114	GO:0009787: regulation of abscisic acid-activated signaling pathway	7.30E-03
115	GO:0042255: ribosome assembly	7.30E-03
116	GO:0006353: DNA-templated transcription, termination	7.30E-03
117	GO:0032544: plastid translation	8.38E-03
118	GO:0019430: removal of superoxide radicals	8.38E-03
119	GO:0010100: negative regulation of photomorphogenesis	8.38E-03
120	GO:0006783: heme biosynthetic process	9.51E-03
121	GO:0009056: catabolic process	9.51E-03
122	GO:0098656: anion transmembrane transport	9.51E-03
123	GO:0009821: alkaloid biosynthetic process	9.51E-03
124	GO:0019432: triglyceride biosynthetic process	9.51E-03
125	GO:0046916: cellular transition metal ion homeostasis	9.51E-03
126	GO:0008356: asymmetric cell division	1.07E-02
127	GO:1900426: positive regulation of defense response to bacterium	1.07E-02
128	GO:0009638: phototropism	1.07E-02
129	GO:0006779: porphyrin-containing compound biosynthetic process	1.07E-02
130	GO:0009098: leucine biosynthetic process	1.07E-02
131	GO:0048354: mucilage biosynthetic process involved in seed coat development	1.07E-02
132	GO:0010380: regulation of chlorophyll biosynthetic process	1.07E-02
133	GO:0009688: abscisic acid biosynthetic process	1.19E-02
134	GO:0045036: protein targeting to chloroplast	1.19E-02
135	GO:0010192: mucilage biosynthetic process	1.19E-02
136	GO:0051555: flavonol biosynthetic process	1.19E-02
137	GO:0055062: phosphate ion homeostasis	1.19E-02
138	GO:0009910: negative regulation of flower development	1.20E-02
139	GO:0009637: response to blue light	1.32E-02
140	GO:0006816: calcium ion transport	1.32E-02
141	GO:0043085: positive regulation of catalytic activity	1.32E-02
142	GO:0007623: circadian rhythm	1.33E-02
143	GO:0010582: floral meristem determinacy	1.46E-02
144	GO:0006790: sulfur compound metabolic process	1.46E-02
145	GO:0045037: protein import into chloroplast stroma	1.46E-02
146	GO:0010075: regulation of meristem growth	1.59E-02
147	GO:0009725: response to hormone	1.59E-02
148	GO:0009767: photosynthetic electron transport chain	1.59E-02
149	GO:0030048: actin filament-based movement	1.59E-02
150	GO:0009785: blue light signaling pathway	1.59E-02
151	GO:0009744: response to sucrose	1.70E-02
152	GO:0019253: reductive pentose-phosphate cycle	1.74E-02
153	GO:0009266: response to temperature stimulus	1.74E-02
154	GO:0034605: cellular response to heat	1.74E-02
155	GO:0010207: photosystem II assembly	1.74E-02
156	GO:0008643: carbohydrate transport	1.84E-02
157	GO:0009825: multidimensional cell growth	1.88E-02
158	GO:0006071: glycerol metabolic process	2.04E-02
159	GO:0000162: tryptophan biosynthetic process	2.04E-02
160	GO:0006289: nucleotide-excision repair	2.19E-02
161	GO:2000377: regulation of reactive oxygen species metabolic process	2.19E-02
162	GO:0009944: polarity specification of adaxial/abaxial axis	2.19E-02
163	GO:0006418: tRNA aminoacylation for protein translation	2.35E-02
164	GO:0019915: lipid storage	2.51E-02
165	GO:0006810: transport	2.64E-02
166	GO:0080092: regulation of pollen tube growth	2.68E-02
167	GO:0055114: oxidation-reduction process	2.84E-02
168	GO:0070417: cellular response to cold	3.21E-02
169	GO:0046777: protein autophosphorylation	3.28E-02
170	GO:0008033: tRNA processing	3.39E-02
171	GO:0010051: xylem and phloem pattern formation	3.39E-02
172	GO:0010087: phloem or xylem histogenesis	3.39E-02
173	GO:0010118: stomatal movement	3.39E-02
174	GO:0042752: regulation of circadian rhythm	3.77E-02
175	GO:0009646: response to absence of light	3.77E-02
176	GO:0009851: auxin biosynthetic process	3.96E-02
177	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	4.15E-02
178	GO:0032502: developmental process	4.35E-02
179	GO:0007264: small GTPase mediated signal transduction	4.35E-02
180	GO:0030163: protein catabolic process	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
2	GO:0046905: phytoene synthase activity	0.00E+00
3	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
4	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
5	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
6	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
7	GO:1990534: thermospermine oxidase activity	0.00E+00
8	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
9	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
10	GO:0045436: lycopene beta cyclase activity	0.00E+00
11	GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity	0.00E+00
12	GO:0030946: protein tyrosine phosphatase activity, metal-dependent	0.00E+00
13	GO:0004343: glucosamine 6-phosphate N-acetyltransferase activity	0.00E+00
14	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
15	GO:0015136: sialic acid transmembrane transporter activity	0.00E+00
16	GO:0004848: ureidoglycolate hydrolase activity	2.57E-05
17	GO:0000254: C-4 methylsterol oxidase activity	5.61E-05
18	GO:0005338: nucleotide-sugar transmembrane transporter activity	3.80E-04
19	GO:0051996: squalene synthase activity	4.07E-04
20	GO:0046906: tetrapyrrole binding	4.07E-04
21	GO:0033984: indole-3-glycerol-phosphate lyase activity	4.07E-04
22	GO:0015085: calcium ion transmembrane transporter activity	4.07E-04
23	GO:0004831: tyrosine-tRNA ligase activity	4.07E-04
24	GO:0004325: ferrochelatase activity	4.07E-04
25	GO:0008080: N-acetyltransferase activity	5.29E-04
26	GO:0048038: quinone binding	6.92E-04
27	GO:0071949: FAD binding	6.96E-04
28	GO:0035241: protein-arginine omega-N monomethyltransferase activity	8.83E-04
29	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	8.83E-04
30	GO:0003862: 3-isopropylmalate dehydrogenase activity	8.83E-04
31	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	8.83E-04
32	GO:0017118: lipoyltransferase activity	8.83E-04
33	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	8.83E-04
34	GO:0080045: quercetin 3'-O-glucosyltransferase activity	8.83E-04
35	GO:0010331: gibberellin binding	8.83E-04
36	GO:0016415: octanoyltransferase activity	8.83E-04
37	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	8.83E-04
38	GO:0015929: hexosaminidase activity	8.83E-04
39	GO:0004563: beta-N-acetylhexosaminidase activity	8.83E-04
40	GO:0004046: aminoacylase activity	8.83E-04
41	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	1.43E-03
42	GO:0008469: histone-arginine N-methyltransferase activity	1.43E-03
43	GO:0004180: carboxypeptidase activity	1.43E-03
44	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.43E-03
45	GO:0032947: protein complex scaffold	1.43E-03
46	GO:0019003: GDP binding	1.43E-03
47	GO:0000900: translation repressor activity, nucleic acid binding	1.43E-03
48	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.61E-03
49	GO:0016851: magnesium chelatase activity	2.07E-03
50	GO:0000339: RNA cap binding	2.07E-03
51	GO:0009882: blue light photoreceptor activity	2.07E-03
52	GO:0047627: adenylylsulfatase activity	2.07E-03
53	GO:0043023: ribosomal large subunit binding	2.07E-03
54	GO:0015368: calcium:cation antiporter activity	2.78E-03
55	GO:0004834: tryptophan synthase activity	2.78E-03
56	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.78E-03
57	GO:0015369: calcium:proton antiporter activity	2.78E-03
58	GO:0005253: anion channel activity	2.78E-03
59	GO:0008194: UDP-glycosyltransferase activity	3.47E-03
60	GO:0005247: voltage-gated chloride channel activity	4.41E-03
61	GO:0080046: quercetin 4'-O-glucosyltransferase activity	4.41E-03
62	GO:0004784: superoxide dismutase activity	4.41E-03
63	GO:0004519: endonuclease activity	4.51E-03
64	GO:0004144: diacylglycerol O-acyltransferase activity	5.31E-03
65	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	5.43E-03
66	GO:0004518: nuclease activity	5.85E-03
67	GO:0004427: inorganic diphosphatase activity	6.28E-03
68	GO:0016621: cinnamoyl-CoA reductase activity	6.28E-03
69	GO:0019899: enzyme binding	6.28E-03
70	GO:0004525: ribonuclease III activity	7.30E-03
71	GO:0016491: oxidoreductase activity	7.91E-03
72	GO:0046914: transition metal ion binding	8.38E-03
73	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	9.10E-03
74	GO:0003723: RNA binding	9.21E-03
75	GO:0030247: polysaccharide binding	9.35E-03
76	GO:0016844: strictosidine synthase activity	1.07E-02
77	GO:0001055: RNA polymerase II activity	1.07E-02
78	GO:0008047: enzyme activator activity	1.19E-02
79	GO:0004713: protein tyrosine kinase activity	1.19E-02
80	GO:0001054: RNA polymerase I activity	1.32E-02
81	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.32E-02
82	GO:0004860: protein kinase inhibitor activity	1.32E-02
83	GO:0004129: cytochrome-c oxidase activity	1.32E-02
84	GO:0001056: RNA polymerase III activity	1.46E-02
85	GO:0003824: catalytic activity	1.52E-02
86	GO:0005315: inorganic phosphate transmembrane transporter activity	1.59E-02
87	GO:0031072: heat shock protein binding	1.59E-02
88	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.71E-02
89	GO:0008131: primary amine oxidase activity	1.74E-02
90	GO:0051537: 2 iron, 2 sulfur cluster binding	1.84E-02
91	GO:0003887: DNA-directed DNA polymerase activity	2.04E-02
92	GO:0051536: iron-sulfur cluster binding	2.19E-02
93	GO:0008168: methyltransferase activity	2.20E-02
94	GO:0016788: hydrolase activity, acting on ester bonds	2.36E-02
95	GO:0003690: double-stranded DNA binding	2.38E-02
96	GO:0035251: UDP-glucosyltransferase activity	2.51E-02
97	GO:0004176: ATP-dependent peptidase activity	2.51E-02
98	GO:0003777: microtubule motor activity	2.55E-02
99	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.99E-02
100	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.99E-02
101	GO:0003727: single-stranded RNA binding	3.03E-02
102	GO:0008514: organic anion transmembrane transporter activity	3.03E-02
103	GO:0022857: transmembrane transporter activity	3.08E-02
104	GO:0004812: aminoacyl-tRNA ligase activity	3.21E-02
105	GO:0005506: iron ion binding	3.42E-02
106	GO:0050662: coenzyme binding	3.77E-02
107	GO:0010181: FMN binding	3.77E-02
108	GO:0004872: receptor activity	3.96E-02
109	GO:0042803: protein homodimerization activity	4.00E-02
110	GO:0019843: rRNA binding	4.09E-02
111	GO:0000156: phosphorelay response regulator activity	4.55E-02
112	GO:0008237: metallopeptidase activity	4.97E-02
113	GO:0008483: transaminase activity	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0009507: chloroplast	8.76E-18
3	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.31E-07
4	GO:0009535: chloroplast thylakoid membrane	2.31E-06
5	GO:0030286: dynein complex	9.87E-05
6	GO:0005845: mRNA cap binding complex	4.07E-04
7	GO:0009570: chloroplast stroma	4.51E-04
8	GO:0005846: nuclear cap binding complex	8.83E-04
9	GO:0016605: PML body	1.43E-03
10	GO:0009897: external side of plasma membrane	1.43E-03
11	GO:0031969: chloroplast membrane	1.96E-03
12	GO:0005875: microtubule associated complex	2.01E-03
13	GO:0042646: plastid nucleoid	2.07E-03
14	GO:0042651: thylakoid membrane	2.46E-03
15	GO:0009517: PSII associated light-harvesting complex II	2.78E-03
16	GO:0055035: plastid thylakoid membrane	3.56E-03
17	GO:0034707: chloride channel complex	4.41E-03
18	GO:0000793: condensed chromosome	4.41E-03
19	GO:0030140: trans-Golgi network transport vesicle	4.41E-03
20	GO:0009840: chloroplastic endopeptidase Clp complex	5.31E-03
21	GO:0000123: histone acetyltransferase complex	6.28E-03
22	GO:0005773: vacuole	6.60E-03
23	GO:0009536: plastid	6.79E-03
24	GO:0009295: nucleoid	7.05E-03
25	GO:0005811: lipid particle	8.38E-03
26	GO:0046930: pore complex	8.38E-03
27	GO:0005623: cell	9.10E-03
28	GO:0042644: chloroplast nucleoid	9.51E-03
29	GO:0016604: nuclear body	1.07E-02
30	GO:0016324: apical plasma membrane	1.19E-02
31	GO:0009508: plastid chromosome	1.59E-02
32	GO:0043231: intracellular membrane-bounded organelle	1.65E-02
33	GO:0046658: anchored component of plasma membrane	1.90E-02
34	GO:0000419: DNA-directed RNA polymerase V complex	2.04E-02
35	GO:0043234: protein complex	2.04E-02
36	GO:0015935: small ribosomal subunit	2.51E-02
37	GO:0009706: chloroplast inner membrane	3.27E-02
38	GO:0009523: photosystem II	3.96E-02
39	GO:0009579: thylakoid	4.32E-02