co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G59710

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0001789: G-protein coupled receptor signaling pathway, coupled to S1P second messenger	0.00E+00
2	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
3	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
4	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
5	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
6	GO:0009264: deoxyribonucleotide catabolic process	0.00E+00
7	GO:0006511: ubiquitin-dependent protein catabolic process	1.01E-13
8	GO:0006412: translation	5.64E-08
9	GO:0051603: proteolysis involved in cellular protein catabolic process	1.97E-06
10	GO:0006626: protein targeting to mitochondrion	7.09E-06
11	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	3.20E-05
12	GO:0042254: ribosome biogenesis	5.05E-05
13	GO:0030163: protein catabolic process	8.16E-05
14	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	1.23E-04
15	GO:0006434: seryl-tRNA aminoacylation	1.23E-04
16	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	2.37E-04
17	GO:0006820: anion transport	2.37E-04
18	GO:0051788: response to misfolded protein	2.86E-04
19	GO:0015786: UDP-glucose transport	2.86E-04
20	GO:0009156: ribonucleoside monophosphate biosynthetic process	2.86E-04
21	GO:0032940: secretion by cell	4.72E-04
22	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	4.72E-04
23	GO:0015783: GDP-fucose transport	4.72E-04
24	GO:0030433: ubiquitin-dependent ERAD pathway	5.65E-04
25	GO:0009647: skotomorphogenesis	6.76E-04
26	GO:0001676: long-chain fatty acid metabolic process	6.76E-04
27	GO:0046513: ceramide biosynthetic process	6.76E-04
28	GO:0006571: tyrosine biosynthetic process	6.76E-04
29	GO:0072334: UDP-galactose transmembrane transport	6.76E-04
30	GO:0009165: nucleotide biosynthetic process	8.97E-04
31	GO:0010363: regulation of plant-type hypersensitive response	8.97E-04
32	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.13E-03
33	GO:0007029: endoplasmic reticulum organization	1.13E-03
34	GO:1902183: regulation of shoot apical meristem development	1.13E-03
35	GO:0045116: protein neddylation	1.13E-03
36	GO:0006413: translational initiation	1.37E-03
37	GO:0045040: protein import into mitochondrial outer membrane	1.39E-03
38	GO:0001731: formation of translation preinitiation complex	1.39E-03
39	GO:0043248: proteasome assembly	1.39E-03
40	GO:0009094: L-phenylalanine biosynthetic process	1.66E-03
41	GO:0000245: spliceosomal complex assembly	1.66E-03
42	GO:0009554: megasporogenesis	1.66E-03
43	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.66E-03
44	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.73E-03
45	GO:0048528: post-embryonic root development	1.95E-03
46	GO:0006499: N-terminal protein myristoylation	2.07E-03
47	GO:0010043: response to zinc ion	2.17E-03
48	GO:0031540: regulation of anthocyanin biosynthetic process	2.26E-03
49	GO:0045087: innate immune response	2.38E-03
50	GO:0006367: transcription initiation from RNA polymerase II promoter	2.58E-03
51	GO:0010204: defense response signaling pathway, resistance gene-independent	2.58E-03
52	GO:0007186: G-protein coupled receptor signaling pathway	2.58E-03
53	GO:0015031: protein transport	2.70E-03
54	GO:0015780: nucleotide-sugar transport	2.91E-03
55	GO:0098656: anion transmembrane transport	2.91E-03
56	GO:0046685: response to arsenic-containing substance	2.91E-03
57	GO:0042761: very long-chain fatty acid biosynthetic process	3.26E-03
58	GO:0010449: root meristem growth	3.26E-03
59	GO:0009870: defense response signaling pathway, resistance gene-dependent	3.62E-03
60	GO:0072593: reactive oxygen species metabolic process	4.00E-03
61	GO:0048229: gametophyte development	4.00E-03
62	GO:0010102: lateral root morphogenesis	4.79E-03
63	GO:0009785: blue light signaling pathway	4.79E-03
64	GO:0006446: regulation of translational initiation	5.20E-03
65	GO:0010167: response to nitrate	5.63E-03
66	GO:0034976: response to endoplasmic reticulum stress	6.06E-03
67	GO:0030150: protein import into mitochondrial matrix	6.51E-03
68	GO:0006289: nucleotide-excision repair	6.51E-03
69	GO:0009116: nucleoside metabolic process	6.51E-03
70	GO:0015992: proton transport	7.45E-03
71	GO:0061077: chaperone-mediated protein folding	7.45E-03
72	GO:0007005: mitochondrion organization	7.93E-03
73	GO:0071215: cellular response to abscisic acid stimulus	8.43E-03
74	GO:0042127: regulation of cell proliferation	8.93E-03
75	GO:0010584: pollen exine formation	8.93E-03
76	GO:0051028: mRNA transport	9.45E-03
77	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	9.45E-03
78	GO:0042147: retrograde transport, endosome to Golgi	9.45E-03
79	GO:0006662: glycerol ether metabolic process	1.05E-02
80	GO:0048825: cotyledon development	1.16E-02
81	GO:0009749: response to glucose	1.16E-02
82	GO:0009556: microsporogenesis	1.16E-02
83	GO:0010183: pollen tube guidance	1.16E-02
84	GO:0010193: response to ozone	1.22E-02
85	GO:0006891: intra-Golgi vesicle-mediated transport	1.22E-02
86	GO:0006914: autophagy	1.40E-02
87	GO:0016579: protein deubiquitination	1.52E-02
88	GO:0010027: thylakoid membrane organization	1.58E-02
89	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.65E-02
90	GO:0016049: cell growth	1.85E-02
91	GO:0008219: cell death	1.91E-02
92	GO:0009817: defense response to fungus, incompatible interaction	1.91E-02
93	GO:0007275: multicellular organism development	2.01E-02
94	GO:0006811: ion transport	2.05E-02
95	GO:0010119: regulation of stomatal movement	2.12E-02
96	GO:0045454: cell redox homeostasis	2.33E-02
97	GO:0034599: cellular response to oxidative stress	2.34E-02
98	GO:0006839: mitochondrial transport	2.48E-02
99	GO:0006631: fatty acid metabolic process	2.56E-02
100	GO:0008283: cell proliferation	2.71E-02
101	GO:0008643: carbohydrate transport	2.87E-02
102	GO:0009965: leaf morphogenesis	2.95E-02
103	GO:0009846: pollen germination	3.19E-02
104	GO:0009736: cytokinin-activated signaling pathway	3.35E-02
105	GO:0009740: gibberellic acid mediated signaling pathway	4.13E-02
106	GO:0009553: embryo sac development	4.22E-02
107	GO:0009742: brassinosteroid mediated signaling pathway	4.49E-02
108	GO:0009908: flower development	4.58E-02
109	GO:0009735: response to cytokinin	4.63E-02
110	GO:0000398: mRNA splicing, via spliceosome	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0016247: channel regulator activity	0.00E+00
2	GO:0005095: GTPase inhibitor activity	0.00E+00
3	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
4	GO:0016881: acid-amino acid ligase activity	0.00E+00
5	GO:0055105: ubiquitin-protein transferase inhibitor activity	0.00E+00
6	GO:0004298: threonine-type endopeptidase activity	1.84E-15
7	GO:0008233: peptidase activity	6.72E-10
8	GO:0003735: structural constituent of ribosome	1.73E-09
9	GO:0036402: proteasome-activating ATPase activity	3.20E-05
10	GO:0015288: porin activity	7.88E-05
11	GO:0008308: voltage-gated anion channel activity	9.94E-05
12	GO:0047326: inositol tetrakisphosphate 5-kinase activity	1.23E-04
13	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	1.23E-04
14	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	1.23E-04
15	GO:0000824: inositol tetrakisphosphate 3-kinase activity	1.23E-04
16	GO:0004828: serine-tRNA ligase activity	1.23E-04
17	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.70E-04
18	GO:0050291: sphingosine N-acyltransferase activity	2.86E-04
19	GO:0019781: NEDD8 activating enzyme activity	2.86E-04
20	GO:0017025: TBP-class protein binding	3.45E-04
21	GO:0008253: 5'-nucleotidase activity	4.72E-04
22	GO:0031683: G-protein beta/gamma-subunit complex binding	4.72E-04
23	GO:0005457: GDP-fucose transmembrane transporter activity	4.72E-04
24	GO:0001664: G-protein coupled receptor binding	4.72E-04
25	GO:0005460: UDP-glucose transmembrane transporter activity	6.76E-04
26	GO:0004749: ribose phosphate diphosphokinase activity	6.76E-04
27	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	8.97E-04
28	GO:0070628: proteasome binding	8.97E-04
29	GO:0016004: phospholipase activator activity	8.97E-04
30	GO:0005459: UDP-galactose transmembrane transporter activity	1.13E-03
31	GO:0008641: small protein activating enzyme activity	1.13E-03
32	GO:0031369: translation initiation factor binding	1.39E-03
33	GO:0031593: polyubiquitin binding	1.39E-03
34	GO:0102391: decanoate--CoA ligase activity	1.66E-03
35	GO:0051020: GTPase binding	1.66E-03
36	GO:0003743: translation initiation factor activity	1.82E-03
37	GO:0004467: long-chain fatty acid-CoA ligase activity	1.95E-03
38	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.95E-03
39	GO:0003746: translation elongation factor activity	2.38E-03
40	GO:0045309: protein phosphorylated amino acid binding	3.26E-03
41	GO:0019904: protein domain specific binding	4.00E-03
42	GO:0005515: protein binding	4.66E-03
43	GO:0015266: protein channel activity	4.79E-03
44	GO:0004175: endopeptidase activity	5.20E-03
45	GO:0043130: ubiquitin binding	6.51E-03
46	GO:0005528: FK506 binding	6.51E-03
47	GO:0019843: rRNA binding	7.30E-03
48	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	7.45E-03
49	GO:0003756: protein disulfide isomerase activity	8.93E-03
50	GO:0008514: organic anion transmembrane transporter activity	8.93E-03
51	GO:0047134: protein-disulfide reductase activity	9.45E-03
52	GO:0016887: ATPase activity	9.76E-03
53	GO:0004791: thioredoxin-disulfide reductase activity	1.11E-02
54	GO:0016853: isomerase activity	1.11E-02
55	GO:0000166: nucleotide binding	1.16E-02
56	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.34E-02
57	GO:0003684: damaged DNA binding	1.40E-02
58	GO:0005525: GTP binding	2.18E-02
59	GO:0003924: GTPase activity	2.87E-02
60	GO:0005198: structural molecule activity	2.95E-02
61	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.03E-02
62	GO:0015035: protein disulfide oxidoreductase activity	4.40E-02
63	GO:0008026: ATP-dependent helicase activity	4.49E-02
64	GO:0003729: mRNA binding	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0005674: transcription factor TFIIF complex	0.00E+00
2	GO:0000502: proteasome complex	1.06E-28
3	GO:0005839: proteasome core complex	1.84E-15
4	GO:0022626: cytosolic ribosome	2.42E-13
5	GO:0005829: cytosol	1.23E-12
6	GO:0022627: cytosolic small ribosomal subunit	3.95E-09
7	GO:0008541: proteasome regulatory particle, lid subcomplex	4.25E-08
8	GO:0005774: vacuolar membrane	4.45E-08
9	GO:0005840: ribosome	1.10E-07
10	GO:0019773: proteasome core complex, alpha-subunit complex	1.29E-06
11	GO:0009506: plasmodesma	2.24E-06
12	GO:0022625: cytosolic large ribosomal subunit	7.54E-06
13	GO:0005737: cytoplasm	9.66E-06
14	GO:0005741: mitochondrial outer membrane	2.16E-05
15	GO:0031597: cytosolic proteasome complex	4.51E-05
16	GO:0031595: nuclear proteasome complex	6.07E-05
17	GO:0005742: mitochondrial outer membrane translocase complex	9.94E-05
18	GO:0046930: pore complex	9.94E-05
19	GO:0008540: proteasome regulatory particle, base subcomplex	1.48E-04
20	GO:0005618: cell wall	1.62E-04
21	GO:0005838: proteasome regulatory particle	4.72E-04
22	GO:0005853: eukaryotic translation elongation factor 1 complex	4.72E-04
23	GO:0046861: glyoxysomal membrane	4.72E-04
24	GO:0015935: small ribosomal subunit	5.17E-04
25	GO:0005783: endoplasmic reticulum	7.86E-04
26	GO:0016471: vacuolar proton-transporting V-type ATPase complex	8.97E-04
27	GO:0005743: mitochondrial inner membrane	9.38E-04
28	GO:0000813: ESCRT I complex	1.13E-03
29	GO:0005730: nucleolus	1.18E-03
30	GO:0005773: vacuole	1.21E-03
31	GO:0016282: eukaryotic 43S preinitiation complex	1.39E-03
32	GO:0000974: Prp19 complex	1.39E-03
33	GO:0005788: endoplasmic reticulum lumen	1.53E-03
34	GO:0005801: cis-Golgi network	1.66E-03
35	GO:0033290: eukaryotic 48S preinitiation complex	1.66E-03
36	GO:0000421: autophagosome membrane	2.26E-03
37	GO:0009514: glyoxysome	2.58E-03
38	GO:0071011: precatalytic spliceosome	3.26E-03
39	GO:0071013: catalytic step 2 spliceosome	4.00E-03
40	GO:0005852: eukaryotic translation initiation factor 3 complex	4.00E-03
41	GO:0019013: viral nucleocapsid	4.79E-03
42	GO:0005834: heterotrimeric G-protein complex	5.16E-03
43	GO:0005769: early endosome	6.06E-03
44	GO:0005758: mitochondrial intermembrane space	6.51E-03
45	GO:0031410: cytoplasmic vesicle	7.93E-03
46	GO:0005744: mitochondrial inner membrane presequence translocase complex	8.93E-03
47	GO:0016592: mediator complex	1.28E-02
48	GO:0005789: endoplasmic reticulum membrane	1.38E-02
49	GO:0005886: plasma membrane	1.39E-02
50	GO:0005643: nuclear pore	1.91E-02
51	GO:0015934: large ribosomal subunit	2.12E-02
52	GO:0090406: pollen tube	2.71E-02
53	GO:0005635: nuclear envelope	3.52E-02
54	GO:0005681: spliceosomal complex	3.78E-02
55	GO:0010008: endosome membrane	3.86E-02
56	GO:0005732: small nucleolar ribonucleoprotein complex	4.58E-02
57	GO:0005794: Golgi apparatus	4.76E-02