co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G56340

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019307: mannose biosynthetic process	0.00E+00
2	GO:0006489: dolichyl diphosphate biosynthetic process	0.00E+00
3	GO:0007160: cell-matrix adhesion	0.00E+00
4	GO:0044794: positive regulation by host of viral process	0.00E+00
5	GO:0045047: protein targeting to ER	0.00E+00
6	GO:0030970: retrograde protein transport, ER to cytosol	0.00E+00
7	GO:0006511: ubiquitin-dependent protein catabolic process	2.85E-26
8	GO:0034976: response to endoplasmic reticulum stress	5.82E-17
9	GO:0006457: protein folding	2.70E-15
10	GO:0030433: ubiquitin-dependent ERAD pathway	1.66E-09
11	GO:0051603: proteolysis involved in cellular protein catabolic process	1.41E-08
12	GO:0030163: protein catabolic process	1.45E-08
13	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	8.42E-08
14	GO:0045454: cell redox homeostasis	1.38E-07
15	GO:0051788: response to misfolded protein	4.16E-07
16	GO:0009651: response to salt stress	2.46E-06
17	GO:0006487: protein N-linked glycosylation	7.18E-06
18	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	7.47E-06
19	GO:0043248: proteasome assembly	1.83E-05
20	GO:0042176: regulation of protein catabolic process	1.83E-05
21	GO:0006886: intracellular protein transport	4.45E-05
22	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.65E-05
23	GO:0046686: response to cadmium ion	7.20E-05
24	GO:0035266: meristem growth	8.78E-05
25	GO:0007292: female gamete generation	8.78E-05
26	GO:0010043: response to zinc ion	1.09E-04
27	GO:0045087: innate immune response	1.24E-04
28	GO:0015786: UDP-glucose transport	2.08E-04
29	GO:0045041: protein import into mitochondrial intermembrane space	2.08E-04
30	GO:0006651: diacylglycerol biosynthetic process	3.48E-04
31	GO:0015783: GDP-fucose transport	3.48E-04
32	GO:0060968: regulation of gene silencing	3.48E-04
33	GO:0046168: glycerol-3-phosphate catabolic process	3.48E-04
34	GO:0006013: mannose metabolic process	3.48E-04
35	GO:0006954: inflammatory response	3.48E-04
36	GO:0001676: long-chain fatty acid metabolic process	5.01E-04
37	GO:0009298: GDP-mannose biosynthetic process	5.01E-04
38	GO:0072334: UDP-galactose transmembrane transport	5.01E-04
39	GO:0006072: glycerol-3-phosphate metabolic process	5.01E-04
40	GO:0009647: skotomorphogenesis	5.01E-04
41	GO:0010483: pollen tube reception	6.66E-04
42	GO:0010363: regulation of plant-type hypersensitive response	6.66E-04
43	GO:0018279: protein N-linked glycosylation via asparagine	8.44E-04
44	GO:0006564: L-serine biosynthetic process	8.44E-04
45	GO:0036065: fucosylation	8.44E-04
46	GO:0048827: phyllome development	1.03E-03
47	GO:0048232: male gamete generation	1.03E-03
48	GO:0009735: response to cytokinin	1.08E-03
49	GO:0006888: ER to Golgi vesicle-mediated transport	1.09E-03
50	GO:0006458: 'de novo' protein folding	1.23E-03
51	GO:1901001: negative regulation of response to salt stress	1.23E-03
52	GO:0042026: protein refolding	1.23E-03
53	GO:0009612: response to mechanical stimulus	1.23E-03
54	GO:0048528: post-embryonic root development	1.44E-03
55	GO:0006605: protein targeting	1.66E-03
56	GO:0010078: maintenance of root meristem identity	1.66E-03
57	GO:0031540: regulation of anthocyanin biosynthetic process	1.66E-03
58	GO:0030968: endoplasmic reticulum unfolded protein response	1.89E-03
59	GO:0006367: transcription initiation from RNA polymerase II promoter	1.89E-03
60	GO:0046685: response to arsenic-containing substance	2.14E-03
61	GO:0009965: leaf morphogenesis	2.18E-03
62	GO:0010205: photoinhibition	2.39E-03
63	GO:0043067: regulation of programmed cell death	2.39E-03
64	GO:0048829: root cap development	2.65E-03
65	GO:0010015: root morphogenesis	2.93E-03
66	GO:0009408: response to heat	3.11E-03
67	GO:0010075: regulation of meristem growth	3.50E-03
68	GO:0009934: regulation of meristem structural organization	3.80E-03
69	GO:0002237: response to molecule of bacterial origin	3.80E-03
70	GO:0009933: meristem structural organization	3.80E-03
71	GO:0090351: seedling development	4.10E-03
72	GO:0009969: xyloglucan biosynthetic process	4.10E-03
73	GO:0019853: L-ascorbic acid biosynthetic process	4.10E-03
74	GO:0015992: proton transport	5.42E-03
75	GO:0061077: chaperone-mediated protein folding	5.42E-03
76	GO:0006413: translational initiation	5.92E-03
77	GO:0009306: protein secretion	6.48E-03
78	GO:0042147: retrograde transport, endosome to Golgi	6.86E-03
79	GO:0051028: mRNA transport	6.86E-03
80	GO:0008033: tRNA processing	7.24E-03
81	GO:0000413: protein peptidyl-prolyl isomerization	7.24E-03
82	GO:0048868: pollen tube development	7.62E-03
83	GO:0009749: response to glucose	8.42E-03
84	GO:0048825: cotyledon development	8.42E-03
85	GO:0080156: mitochondrial mRNA modification	8.83E-03
86	GO:0010193: response to ozone	8.83E-03
87	GO:0016032: viral process	9.24E-03
88	GO:0009567: double fertilization forming a zygote and endosperm	1.01E-02
89	GO:0009627: systemic acquired resistance	1.24E-02
90	GO:0009793: embryo development ending in seed dormancy	1.28E-02
91	GO:0016192: vesicle-mediated transport	1.28E-02
92	GO:0009817: defense response to fungus, incompatible interaction	1.38E-02
93	GO:0009832: plant-type cell wall biogenesis	1.43E-02
94	GO:0010311: lateral root formation	1.43E-02
95	GO:0006499: N-terminal protein myristoylation	1.48E-02
96	GO:0006979: response to oxidative stress	1.59E-02
97	GO:0006631: fatty acid metabolic process	1.84E-02
98	GO:0048364: root development	1.89E-02
99	GO:0009926: auxin polar transport	1.95E-02
100	GO:0000209: protein polyubiquitination	2.01E-02
101	GO:0009644: response to high light intensity	2.06E-02
102	GO:0015031: protein transport	2.14E-02
103	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.24E-02
104	GO:0006812: cation transport	2.29E-02
105	GO:0009736: cytokinin-activated signaling pathway	2.41E-02
106	GO:0006486: protein glycosylation	2.41E-02
107	GO:0006096: glycolytic process	2.72E-02
108	GO:0048367: shoot system development	2.78E-02
109	GO:0048316: seed development	2.78E-02
110	GO:0009553: embryo sac development	3.04E-02
111	GO:0051726: regulation of cell cycle	3.23E-02
112	GO:0009790: embryo development	4.06E-02

Rank	GO Term	Adjusted P value
1	GO:0008752: FMN reductase activity	0.00E+00
2	GO:0004615: phosphomannomutase activity	0.00E+00
3	GO:0052873: FMN reductase (NADPH) activity	0.00E+00
4	GO:0004298: threonine-type endopeptidase activity	9.28E-24
5	GO:0008233: peptidase activity	1.25E-15
6	GO:0003756: protein disulfide isomerase activity	1.60E-13
7	GO:0051082: unfolded protein binding	3.93E-08
8	GO:0036402: proteasome-activating ATPase activity	8.42E-08
9	GO:0017025: TBP-class protein binding	4.91E-06
10	GO:0016887: ATPase activity	1.80E-05
11	GO:0004656: procollagen-proline 4-dioxygenase activity	2.61E-05
12	GO:0003975: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity	8.78E-05
13	GO:1990381: ubiquitin-specific protease binding	8.78E-05
14	GO:0015157: oligosaccharide transmembrane transporter activity	8.78E-05
15	GO:0030234: enzyme regulator activity	1.06E-04
16	GO:0008963: phospho-N-acetylmuramoyl-pentapeptide-transferase activity	2.08E-04
17	GO:0004618: phosphoglycerate kinase activity	2.08E-04
18	GO:0004617: phosphoglycerate dehydrogenase activity	2.08E-04
19	GO:0031418: L-ascorbic acid binding	2.70E-04
20	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	3.48E-04
21	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	3.48E-04
22	GO:0005457: GDP-fucose transmembrane transporter activity	3.48E-04
23	GO:0005460: UDP-glucose transmembrane transporter activity	5.01E-04
24	GO:0009678: hydrogen-translocating pyrophosphatase activity	5.01E-04
25	GO:0016853: isomerase activity	5.76E-04
26	GO:0010181: FMN binding	5.76E-04
27	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	6.66E-04
28	GO:0015368: calcium:cation antiporter activity	6.66E-04
29	GO:0015369: calcium:proton antiporter activity	6.66E-04
30	GO:0005459: UDP-galactose transmembrane transporter activity	8.44E-04
31	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	8.44E-04
32	GO:0008195: phosphatidate phosphatase activity	1.23E-03
33	GO:0102391: decanoate--CoA ligase activity	1.23E-03
34	GO:0008320: protein transmembrane transporter activity	1.44E-03
35	GO:0004467: long-chain fatty acid-CoA ligase activity	1.44E-03
36	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	1.44E-03
37	GO:0004427: inorganic diphosphatase activity	1.44E-03
38	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.52E-03
39	GO:0003746: translation elongation factor activity	1.52E-03
40	GO:0015491: cation:cation antiporter activity	1.66E-03
41	GO:0030246: carbohydrate binding	1.92E-03
42	GO:0008417: fucosyltransferase activity	2.14E-03
43	GO:0051287: NAD binding	2.35E-03
44	GO:0005525: GTP binding	2.61E-03
45	GO:0044183: protein binding involved in protein folding	2.93E-03
46	GO:0004175: endopeptidase activity	3.80E-03
47	GO:0043130: ubiquitin binding	4.74E-03
48	GO:0008514: organic anion transmembrane transporter activity	6.48E-03
49	GO:0003743: translation initiation factor activity	7.42E-03
50	GO:0016597: amino acid binding	1.10E-02
51	GO:0005509: calcium ion binding	1.42E-02
52	GO:0005515: protein binding	1.49E-02
53	GO:0003697: single-stranded DNA binding	1.63E-02
54	GO:0051539: 4 iron, 4 sulfur cluster binding	1.79E-02
55	GO:0043621: protein self-association	2.06E-02
56	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.18E-02
57	GO:0000166: nucleotide binding	3.21E-02
58	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.71E-02
59	GO:0016829: lyase activity	3.85E-02
60	GO:0004252: serine-type endopeptidase activity	3.92E-02
61	GO:0008565: protein transporter activity	4.14E-02
62	GO:0005507: copper ion binding	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0005674: transcription factor TFIIF complex	0.00E+00
2	GO:0008305: integrin complex	0.00E+00
3	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
4	GO:0000502: proteasome complex	3.18E-42
5	GO:0005839: proteasome core complex	9.28E-24
6	GO:0005783: endoplasmic reticulum	4.08E-21
7	GO:0005788: endoplasmic reticulum lumen	2.96E-18
8	GO:0008541: proteasome regulatory particle, lid subcomplex	3.14E-13
9	GO:0005774: vacuolar membrane	9.92E-13
10	GO:0019773: proteasome core complex, alpha-subunit complex	9.27E-12
11	GO:0005829: cytosol	5.10E-11
12	GO:0031595: nuclear proteasome complex	8.92E-10
13	GO:0008540: proteasome regulatory particle, base subcomplex	6.88E-09
14	GO:0031597: cytosolic proteasome complex	1.50E-07
15	GO:0005789: endoplasmic reticulum membrane	8.53E-07
16	GO:0005838: proteasome regulatory particle	1.58E-06
17	GO:0005886: plasma membrane	6.50E-06
18	GO:0005773: vacuole	1.67E-05
19	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	3.54E-05
20	GO:0000836: Hrd1p ubiquitin ligase complex	8.78E-05
21	GO:0044322: endoplasmic reticulum quality control compartment	8.78E-05
22	GO:0009506: plasmodesma	1.12E-04
23	GO:0005737: cytoplasm	2.99E-04
24	GO:0005794: Golgi apparatus	3.16E-04
25	GO:0046861: glyoxysomal membrane	3.48E-04
26	GO:0009507: chloroplast	4.71E-04
27	GO:0009331: glycerol-3-phosphate dehydrogenase complex	5.01E-04
28	GO:0036513: Derlin-1 retrotranslocation complex	5.01E-04
29	GO:0032580: Golgi cisterna membrane	7.93E-04
30	GO:0008250: oligosaccharyltransferase complex	8.44E-04
31	GO:0005851: eukaryotic translation initiation factor 2B complex	1.03E-03
32	GO:0030127: COPII vesicle coat	1.03E-03
33	GO:0030904: retromer complex	1.03E-03
34	GO:0022626: cytosolic ribosome	1.15E-03
35	GO:0000326: protein storage vacuole	1.89E-03
36	GO:0009514: glyoxysome	1.89E-03
37	GO:0030176: integral component of endoplasmic reticulum membrane	4.10E-03
38	GO:0005623: cell	4.73E-03
39	GO:0009505: plant-type cell wall	5.04E-03
40	GO:0048046: apoplast	7.47E-03
41	GO:0016020: membrane	7.86E-03
42	GO:0019898: extrinsic component of membrane	8.42E-03
43	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.08E-02
44	GO:0005643: nuclear pore	1.38E-02
45	GO:0005819: spindle	1.74E-02
46	GO:0031902: late endosome membrane	1.84E-02
47	GO:0009570: chloroplast stroma	2.06E-02
48	GO:0005635: nuclear envelope	2.53E-02
49	GO:0009524: phragmoplast	3.78E-02
50	GO:0009705: plant-type vacuole membrane	4.58E-02