Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G56300

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1904526: regulation of microtubule binding0.00E+00
2GO:0009667: plastid inner membrane organization0.00E+00
3GO:0009631: cold acclimation1.40E-09
4GO:0009737: response to abscisic acid3.82E-09
5GO:0009409: response to cold3.17E-07
6GO:0009414: response to water deprivation2.25E-06
7GO:0015812: gamma-aminobutyric acid transport2.76E-05
8GO:0009609: response to symbiotic bacterium2.76E-05
9GO:0050793: regulation of developmental process7.01E-05
10GO:0015709: thiosulfate transport7.01E-05
11GO:0071422: succinate transmembrane transport7.01E-05
12GO:0071712: ER-associated misfolded protein catabolic process7.01E-05
13GO:0032527: protein exit from endoplasmic reticulum7.01E-05
14GO:0042631: cellular response to water deprivation1.07E-04
15GO:0010150: leaf senescence1.16E-04
16GO:0032940: secretion by cell1.23E-04
17GO:0009749: response to glucose1.36E-04
18GO:0000302: response to reactive oxygen species1.46E-04
19GO:0051259: protein oligomerization1.83E-04
20GO:0015729: oxaloacetate transport1.83E-04
21GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain2.48E-04
22GO:0006552: leucine catabolic process2.48E-04
23GO:0071423: malate transmembrane transport3.18E-04
24GO:0006574: valine catabolic process3.92E-04
25GO:0031053: primary miRNA processing3.92E-04
26GO:0035435: phosphate ion transmembrane transport3.92E-04
27GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity4.69E-04
28GO:0045926: negative regulation of growth4.69E-04
29GO:0009082: branched-chain amino acid biosynthetic process4.69E-04
30GO:0010555: response to mannitol4.69E-04
31GO:0071470: cellular response to osmotic stress4.69E-04
32GO:0009644: response to high light intensity4.99E-04
33GO:1902074: response to salt5.49E-04
34GO:0045995: regulation of embryonic development5.49E-04
35GO:0008272: sulfate transport5.49E-04
36GO:0042538: hyperosmotic salinity response5.76E-04
37GO:0009415: response to water6.32E-04
38GO:0050821: protein stabilization6.32E-04
39GO:0009787: regulation of abscisic acid-activated signaling pathway6.32E-04
40GO:0009819: drought recovery6.32E-04
41GO:0019432: triglyceride biosynthetic process8.07E-04
42GO:2000280: regulation of root development8.99E-04
43GO:0009611: response to wounding9.92E-04
44GO:0005983: starch catabolic process1.19E-03
45GO:0045037: protein import into chloroplast stroma1.19E-03
46GO:0050826: response to freezing1.29E-03
47GO:0048440: carpel development1.40E-03
48GO:0007623: circadian rhythm1.45E-03
49GO:0010030: positive regulation of seed germination1.50E-03
50GO:0006071: glycerol metabolic process1.62E-03
51GO:0030150: protein import into mitochondrial matrix1.73E-03
52GO:0003333: amino acid transmembrane transport1.97E-03
53GO:0051260: protein homooligomerization1.97E-03
54GO:0009269: response to desiccation1.97E-03
55GO:0010017: red or far-red light signaling pathway2.09E-03
56GO:0006970: response to osmotic stress2.39E-03
57GO:0070417: cellular response to cold2.48E-03
58GO:0000413: protein peptidyl-prolyl isomerization2.61E-03
59GO:0048653: anther development2.61E-03
60GO:0048868: pollen tube development2.74E-03
61GO:0071472: cellular response to salt stress2.74E-03
62GO:0010286: heat acclimation3.75E-03
63GO:0010029: regulation of seed germination4.22E-03
64GO:0009753: response to jasmonic acid4.32E-03
65GO:0006974: cellular response to DNA damage stimulus4.38E-03
66GO:0048481: plant ovule development4.87E-03
67GO:0007568: aging5.38E-03
68GO:0006839: mitochondrial transport6.27E-03
69GO:0042542: response to hydrogen peroxide6.64E-03
70GO:0009744: response to sucrose6.82E-03
71GO:0000209: protein polyubiquitination7.01E-03
72GO:0008643: carbohydrate transport7.20E-03
73GO:0035556: intracellular signal transduction7.51E-03
74GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process7.79E-03
75GO:0009651: response to salt stress1.08E-02
76GO:0051726: regulation of cell cycle1.12E-02
77GO:0000398: mRNA splicing, via spliceosome1.19E-02
78GO:0006470: protein dephosphorylation1.74E-02
79GO:0008380: RNA splicing1.79E-02
80GO:0009617: response to bacterium1.79E-02
81GO:0010468: regulation of gene expression1.79E-02
82GO:0045944: positive regulation of transcription from RNA polymerase II promoter2.04E-02
83GO:0006810: transport2.13E-02
84GO:0007049: cell cycle2.33E-02
85GO:0009723: response to ethylene2.39E-02
86GO:0045892: negative regulation of transcription, DNA-templated2.89E-02
87GO:0009793: embryo development ending in seed dormancy3.35E-02
88GO:0050832: defense response to fungus4.29E-02
89GO:0009738: abscisic acid-activated signaling pathway4.87E-02
90GO:0009416: response to light stimulus4.99E-02
RankGO TermAdjusted P value
1GO:0005534: galactose binding0.00E+00
2GO:0015185: gamma-aminobutyric acid transmembrane transporter activity2.76E-05
3GO:1901677: phosphate transmembrane transporter activity7.01E-05
4GO:0015180: L-alanine transmembrane transporter activity7.01E-05
5GO:0044390: ubiquitin-like protein conjugating enzyme binding7.01E-05
6GO:0015117: thiosulfate transmembrane transporter activity7.01E-05
7GO:0015297: antiporter activity1.09E-04
8GO:0005310: dicarboxylic acid transmembrane transporter activity1.23E-04
9GO:0015141: succinate transmembrane transporter activity1.23E-04
10GO:0015131: oxaloacetate transmembrane transporter activity1.83E-04
11GO:0052656: L-isoleucine transaminase activity1.83E-04
12GO:0052654: L-leucine transaminase activity1.83E-04
13GO:0052655: L-valine transaminase activity1.83E-04
14GO:0015189: L-lysine transmembrane transporter activity1.83E-04
15GO:0015181: arginine transmembrane transporter activity1.83E-04
16GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway2.48E-04
17GO:0005313: L-glutamate transmembrane transporter activity2.48E-04
18GO:0004084: branched-chain-amino-acid transaminase activity2.48E-04
19GO:0004556: alpha-amylase activity3.92E-04
20GO:0004144: diacylglycerol O-acyltransferase activity4.69E-04
21GO:0015140: malate transmembrane transporter activity5.49E-04
22GO:0015288: porin activity6.32E-04
23GO:0015171: amino acid transmembrane transporter activity6.80E-04
24GO:0004864: protein phosphatase inhibitor activity9.92E-04
25GO:0003680: AT DNA binding1.09E-03
26GO:0015116: sulfate transmembrane transporter activity1.19E-03
27GO:0015266: protein channel activity1.29E-03
28GO:0004707: MAP kinase activity1.97E-03
29GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity2.74E-03
30GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.87E-03
31GO:0004693: cyclin-dependent protein serine/threonine kinase activity5.21E-03
32GO:0008289: lipid binding5.59E-03
33GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.59E-03
34GO:0031625: ubiquitin protein ligase binding9.01E-03
35GO:0016874: ligase activity1.03E-02
36GO:0022857: transmembrane transporter activity1.03E-02
37GO:0005515: protein binding1.27E-02
38GO:0004842: ubiquitin-protein transferase activity2.00E-02
39GO:0061630: ubiquitin protein ligase activity2.61E-02
40GO:0042803: protein homodimerization activity2.95E-02
41GO:0004722: protein serine/threonine phosphatase activity3.05E-02
RankGO TermAdjusted P value
1GO:0034426: etioplast membrane0.00E+00
2GO:0031357: integral component of chloroplast inner membrane7.01E-05
3GO:0036513: Derlin-1 retrotranslocation complex1.83E-04
4GO:0009527: plastid outer membrane2.48E-04
5GO:0010445: nuclear dicing body2.48E-04
6GO:0031305: integral component of mitochondrial inner membrane6.32E-04
7GO:0005811: lipid particle7.18E-04
8GO:0046930: pore complex7.18E-04
9GO:0000307: cyclin-dependent protein kinase holoenzyme complex7.18E-04
10GO:0009941: chloroplast envelope8.01E-04
11GO:0005744: mitochondrial inner membrane presequence translocase complex2.35E-03
12GO:0009707: chloroplast outer membrane4.87E-03
13GO:0031966: mitochondrial membrane7.99E-03
14GO:0005681: spliceosomal complex9.44E-03
15GO:0016607: nuclear speck9.65E-03
16GO:0005654: nucleoplasm1.24E-02
17GO:0009705: plant-type vacuole membrane1.58E-02
18GO:0016021: integral component of membrane1.95E-02
19GO:0009570: chloroplast stroma2.51E-02
20GO:0031969: chloroplast membrane2.51E-02
21GO:0005743: mitochondrial inner membrane3.15E-02
22GO:0005887: integral component of plasma membrane4.13E-02
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Gene type



Gene DE type