Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G56190

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1904281: positive regulation of transcription from RNA polymerase V promoter0.00E+00
2GO:1990280: RNA localization to chromatin0.00E+00
3GO:0019685: photosynthesis, dark reaction0.00E+00
4GO:0015813: L-glutamate transport0.00E+00
5GO:0044030: regulation of DNA methylation5.92E-07
6GO:1902466: positive regulation of histone H3-K27 trimethylation4.83E-06
7GO:1903705: positive regulation of production of siRNA involved in RNA interference4.83E-06
8GO:0080005: photosystem stoichiometry adjustment1.33E-05
9GO:0050688: regulation of defense response to virus1.33E-05
10GO:0006435: threonyl-tRNA aminoacylation1.33E-05
11GO:0006013: mannose metabolic process2.46E-05
12GO:0033014: tetrapyrrole biosynthetic process3.83E-05
13GO:0051289: protein homotetramerization3.83E-05
14GO:2001141: regulation of RNA biosynthetic process3.83E-05
15GO:0015729: oxaloacetate transport3.83E-05
16GO:0046653: tetrahydrofolate metabolic process3.83E-05
17GO:0006346: methylation-dependent chromatin silencing5.40E-05
18GO:0019676: ammonia assimilation cycle5.40E-05
19GO:0015743: malate transport5.40E-05
20GO:0009616: virus induced gene silencing7.14E-05
21GO:0071423: malate transmembrane transport7.14E-05
22GO:1900056: negative regulation of leaf senescence1.32E-04
23GO:0010050: vegetative phase change1.32E-04
24GO:0009396: folic acid-containing compound biosynthetic process1.32E-04
25GO:0071482: cellular response to light stimulus1.78E-04
26GO:0010267: production of ta-siRNAs involved in RNA interference2.27E-04
27GO:0035999: tetrahydrofolate interconversion2.27E-04
28GO:0010380: regulation of chlorophyll biosynthetic process2.27E-04
29GO:0006782: protoporphyrinogen IX biosynthetic process2.53E-04
30GO:0006352: DNA-templated transcription, initiation2.79E-04
31GO:0080188: RNA-directed DNA methylation3.90E-04
32GO:0010025: wax biosynthetic process4.19E-04
33GO:0006730: one-carbon metabolic process5.39E-04
34GO:0006814: sodium ion transport7.34E-04
35GO:0051607: defense response to virus9.78E-04
36GO:0015995: chlorophyll biosynthetic process1.13E-03
37GO:0007568: aging1.32E-03
38GO:0009910: negative regulation of flower development1.32E-03
39GO:0009853: photorespiration1.40E-03
40GO:0009624: response to nematode2.56E-03
41GO:0010468: regulation of gene expression4.18E-03
42GO:0009658: chloroplast organization4.99E-03
43GO:0046777: protein autophosphorylation6.06E-03
44GO:0009735: response to cytokinin1.06E-02
45GO:0045893: positive regulation of transcription, DNA-templated1.25E-02
46GO:0007275: multicellular organism development3.03E-02
47GO:0009793: embryo development ending in seed dormancy3.40E-02
48GO:0006508: proteolysis4.17E-02
RankGO TermAdjusted P value
1GO:0070009: serine-type aminopeptidase activity0.00E+00
2GO:0004829: threonine-tRNA ligase activity1.33E-05
3GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity1.33E-05
4GO:0004477: methenyltetrahydrofolate cyclohydrolase activity1.33E-05
5GO:0004109: coproporphyrinogen oxidase activity1.33E-05
6GO:0015367: oxoglutarate:malate antiporter activity1.33E-05
7GO:0015131: oxaloacetate transmembrane transporter activity3.83E-05
8GO:0001053: plastid sigma factor activity5.40E-05
9GO:0016987: sigma factor activity5.40E-05
10GO:0005313: L-glutamate transmembrane transporter activity5.40E-05
11GO:0004559: alpha-mannosidase activity1.11E-04
12GO:0015140: malate transmembrane transporter activity1.32E-04
13GO:0000175: 3'-5'-exoribonuclease activity3.33E-04
14GO:0008408: 3'-5' exonuclease activity5.09E-04
15GO:0003727: single-stranded RNA binding6.03E-04
16GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.02E-03
17GO:0000166: nucleotide binding1.13E-02
18GO:0030246: carbohydrate binding1.40E-02
19GO:0003824: catalytic activity2.00E-02
20GO:0003729: mRNA binding2.48E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast9.98E-07
2GO:0009706: chloroplast inner membrane1.38E-06
3GO:0005655: nucleolar ribonuclease P complex1.11E-04
4GO:0009941: chloroplast envelope1.17E-04
5GO:0009536: plastid1.93E-04
6GO:0048471: perinuclear region of cytoplasm2.79E-04
7GO:0009534: chloroplast thylakoid1.07E-03
8GO:0009570: chloroplast stroma1.62E-03
9GO:0005654: nucleoplasm2.93E-03
10GO:0048046: apoplast6.27E-03
11GO:0005773: vacuole9.16E-03
12GO:0005622: intracellular1.70E-02
13GO:0009505: plant-type cell wall2.20E-02
14GO:0005730: nucleolus2.72E-02
15GO:0009535: chloroplast thylakoid membrane3.32E-02
16GO:0005774: vacuolar membrane4.54E-02
17GO:0005618: cell wall5.00E-02
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Gene type



Gene DE type