GO Enrichment Analysis of Co-expressed Genes with
AT1G56045
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0007530: sex determination | 0.00E+00 |
| 2 | GO:0070918: production of small RNA involved in gene silencing by RNA | 0.00E+00 |
| 3 | GO:0090239: regulation of histone H4 acetylation | 0.00E+00 |
| 4 | GO:0000740: nuclear membrane fusion | 0.00E+00 |
| 5 | GO:0031990: mRNA export from nucleus in response to heat stress | 0.00E+00 |
| 6 | GO:0032211: negative regulation of telomere maintenance via telomerase | 0.00E+00 |
| 7 | GO:0046487: glyoxylate metabolic process | 0.00E+00 |
| 8 | GO:0006412: translation | 4.60E-136 |
| 9 | GO:0042254: ribosome biogenesis | 9.39E-61 |
| 10 | GO:0000027: ribosomal large subunit assembly | 8.52E-10 |
| 11 | GO:0000028: ribosomal small subunit assembly | 1.01E-06 |
| 12 | GO:0009735: response to cytokinin | 1.63E-05 |
| 13 | GO:0009955: adaxial/abaxial pattern specification | 2.10E-05 |
| 14 | GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c | 3.26E-05 |
| 15 | GO:1902626: assembly of large subunit precursor of preribosome | 5.56E-05 |
| 16 | GO:0002181: cytoplasmic translation | 5.56E-05 |
| 17 | GO:0000387: spliceosomal snRNP assembly | 1.16E-04 |
| 18 | GO:0006626: protein targeting to mitochondrion | 2.68E-04 |
| 19 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 6.25E-04 |
| 20 | GO:0034402: recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex | 6.25E-04 |
| 21 | GO:0032365: intracellular lipid transport | 6.25E-04 |
| 22 | GO:0006407: rRNA export from nucleus | 6.25E-04 |
| 23 | GO:0015801: aromatic amino acid transport | 6.25E-04 |
| 24 | GO:0030490: maturation of SSU-rRNA | 6.25E-04 |
| 25 | GO:2001006: regulation of cellulose biosynthetic process | 6.25E-04 |
| 26 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 6.25E-04 |
| 27 | GO:0000398: mRNA splicing, via spliceosome | 9.54E-04 |
| 28 | GO:0000413: protein peptidyl-prolyl isomerization | 1.08E-03 |
| 29 | GO:0022900: electron transport chain | 1.08E-03 |
| 30 | GO:0006414: translational elongation | 1.17E-03 |
| 31 | GO:0098656: anion transmembrane transport | 1.29E-03 |
| 32 | GO:0009245: lipid A biosynthetic process | 1.29E-03 |
| 33 | GO:0045948: positive regulation of translational initiation | 1.34E-03 |
| 34 | GO:0006432: phenylalanyl-tRNA aminoacylation | 1.34E-03 |
| 35 | GO:0045905: positive regulation of translational termination | 1.34E-03 |
| 36 | GO:0071668: plant-type cell wall assembly | 1.34E-03 |
| 37 | GO:0034243: regulation of transcription elongation from RNA polymerase II promoter | 1.34E-03 |
| 38 | GO:0008154: actin polymerization or depolymerization | 1.34E-03 |
| 39 | GO:0045901: positive regulation of translational elongation | 1.34E-03 |
| 40 | GO:0045041: protein import into mitochondrial intermembrane space | 1.34E-03 |
| 41 | GO:0048569: post-embryonic animal organ development | 1.34E-03 |
| 42 | GO:0043981: histone H4-K5 acetylation | 1.34E-03 |
| 43 | GO:0006452: translational frameshifting | 1.34E-03 |
| 44 | GO:0010198: synergid death | 1.34E-03 |
| 45 | GO:0032786: positive regulation of DNA-templated transcription, elongation | 2.21E-03 |
| 46 | GO:0009150: purine ribonucleotide metabolic process | 2.21E-03 |
| 47 | GO:0045793: positive regulation of cell size | 2.21E-03 |
| 48 | GO:0034227: tRNA thio-modification | 2.21E-03 |
| 49 | GO:0042256: mature ribosome assembly | 2.21E-03 |
| 50 | GO:0000288: nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | 2.21E-03 |
| 51 | GO:0006820: anion transport | 2.37E-03 |
| 52 | GO:0006241: CTP biosynthetic process | 3.22E-03 |
| 53 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 3.22E-03 |
| 54 | GO:0006165: nucleoside diphosphate phosphorylation | 3.22E-03 |
| 55 | GO:0042989: sequestering of actin monomers | 3.22E-03 |
| 56 | GO:0006228: UTP biosynthetic process | 3.22E-03 |
| 57 | GO:0006168: adenine salvage | 3.22E-03 |
| 58 | GO:0009558: embryo sac cellularization | 3.22E-03 |
| 59 | GO:0032877: positive regulation of DNA endoreduplication | 3.22E-03 |
| 60 | GO:0006166: purine ribonucleoside salvage | 3.22E-03 |
| 61 | GO:0070301: cellular response to hydrogen peroxide | 3.22E-03 |
| 62 | GO:0051085: chaperone mediated protein folding requiring cofactor | 3.22E-03 |
| 63 | GO:0006289: nucleotide-excision repair | 4.24E-03 |
| 64 | GO:0006487: protein N-linked glycosylation | 4.24E-03 |
| 65 | GO:0006621: protein retention in ER lumen | 4.34E-03 |
| 66 | GO:0051781: positive regulation of cell division | 4.34E-03 |
| 67 | GO:0042274: ribosomal small subunit biogenesis | 4.34E-03 |
| 68 | GO:0006183: GTP biosynthetic process | 4.34E-03 |
| 69 | GO:0009853: photorespiration | 4.75E-03 |
| 70 | GO:0061077: chaperone-mediated protein folding | 5.15E-03 |
| 71 | GO:0044209: AMP salvage | 5.58E-03 |
| 72 | GO:0045040: protein import into mitochondrial outer membrane | 6.92E-03 |
| 73 | GO:0006574: valine catabolic process | 6.92E-03 |
| 74 | GO:0006777: Mo-molybdopterin cofactor biosynthetic process | 6.92E-03 |
| 75 | GO:0000470: maturation of LSU-rRNA | 6.92E-03 |
| 76 | GO:0043248: proteasome assembly | 6.92E-03 |
| 77 | GO:0006413: translational initiation | 7.07E-03 |
| 78 | GO:0009965: leaf morphogenesis | 7.65E-03 |
| 79 | GO:0015991: ATP hydrolysis coupled proton transport | 7.88E-03 |
| 80 | GO:0000911: cytokinesis by cell plate formation | 8.37E-03 |
| 81 | GO:0042026: protein refolding | 8.37E-03 |
| 82 | GO:0006458: 'de novo' protein folding | 8.37E-03 |
| 83 | GO:1901001: negative regulation of response to salt stress | 8.37E-03 |
| 84 | GO:0009793: embryo development ending in seed dormancy | 9.38E-03 |
| 85 | GO:0032880: regulation of protein localization | 9.91E-03 |
| 86 | GO:0009690: cytokinin metabolic process | 1.16E-02 |
| 87 | GO:0006367: transcription initiation from RNA polymerase II promoter | 1.33E-02 |
| 88 | GO:0010204: defense response signaling pathway, resistance gene-independent | 1.33E-02 |
| 89 | GO:0044030: regulation of DNA methylation | 1.33E-02 |
| 90 | GO:0009808: lignin metabolic process | 1.33E-02 |
| 91 | GO:0048589: developmental growth | 1.51E-02 |
| 92 | GO:0009060: aerobic respiration | 1.51E-02 |
| 93 | GO:0006325: chromatin organization | 1.90E-02 |
| 94 | GO:0043069: negative regulation of programmed cell death | 1.90E-02 |
| 95 | GO:0006913: nucleocytoplasmic transport | 2.11E-02 |
| 96 | GO:0015770: sucrose transport | 2.11E-02 |
| 97 | GO:0010015: root morphogenesis | 2.11E-02 |
| 98 | GO:0016925: protein sumoylation | 2.32E-02 |
| 99 | GO:0006790: sulfur compound metabolic process | 2.32E-02 |
| 100 | GO:0009651: response to salt stress | 2.46E-02 |
| 101 | GO:0010102: lateral root morphogenesis | 2.54E-02 |
| 102 | GO:0010628: positive regulation of gene expression | 2.54E-02 |
| 103 | GO:2000028: regulation of photoperiodism, flowering | 2.54E-02 |
| 104 | GO:0010229: inflorescence development | 2.54E-02 |
| 105 | GO:0006446: regulation of translational initiation | 2.77E-02 |
| 106 | GO:0048467: gynoecium development | 2.77E-02 |
| 107 | GO:0015031: protein transport | 2.90E-02 |
| 108 | GO:0010039: response to iron ion | 3.01E-02 |
| 109 | GO:0008283: cell proliferation | 3.28E-02 |
| 110 | GO:0009409: response to cold | 3.30E-02 |
| 111 | GO:0030150: protein import into mitochondrial matrix | 3.50E-02 |
| 112 | GO:0007010: cytoskeleton organization | 3.50E-02 |
| 113 | GO:0006406: mRNA export from nucleus | 3.50E-02 |
| 114 | GO:0009116: nucleoside metabolic process | 3.50E-02 |
| 115 | GO:0009644: response to high light intensity | 3.55E-02 |
| 116 | GO:0006306: DNA methylation | 4.01E-02 |
| 117 | GO:0006366: transcription from RNA polymerase II promoter | 4.01E-02 |
| 118 | GO:0003333: amino acid transmembrane transport | 4.01E-02 |
| 119 | GO:0015992: proton transport | 4.01E-02 |
| 120 | GO:0051260: protein homooligomerization | 4.01E-02 |
| 121 | GO:0010431: seed maturation | 4.01E-02 |
| 122 | GO:0007005: mitochondrion organization | 4.28E-02 |
| 123 | GO:0046686: response to cadmium ion | 4.36E-02 |
| 124 | GO:0040007: growth | 4.55E-02 |
| 125 | GO:0019722: calcium-mediated signaling | 4.83E-02 |
| 126 | GO:0010089: xylem development | 4.83E-02 |
| 127 | GO:0006457: protein folding | 4.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061799: cyclic pyranopterin monophosphate synthase activity | 0.00E+00 |
| 2 | GO:0003735: structural constituent of ribosome | 3.57E-172 |
| 3 | GO:0003729: mRNA binding | 6.48E-30 |
| 4 | GO:0019843: rRNA binding | 8.59E-11 |
| 5 | GO:0008121: ubiquinol-cytochrome-c reductase activity | 3.26E-05 |
| 6 | GO:0001055: RNA polymerase II activity | 1.16E-04 |
| 7 | GO:0008097: 5S rRNA binding | 1.17E-04 |
| 8 | GO:0003746: translation elongation factor activity | 1.30E-04 |
| 9 | GO:0001054: RNA polymerase I activity | 1.83E-04 |
| 10 | GO:0004576: oligosaccharyl transferase activity | 1.99E-04 |
| 11 | GO:0001056: RNA polymerase III activity | 2.23E-04 |
| 12 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.97E-04 |
| 13 | GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 3.01E-04 |
| 14 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.90E-04 |
| 15 | GO:0031177: phosphopantetheine binding | 4.21E-04 |
| 16 | GO:0000035: acyl binding | 5.59E-04 |
| 17 | GO:0005080: protein kinase C binding | 6.25E-04 |
| 18 | GO:0035614: snRNA stem-loop binding | 6.25E-04 |
| 19 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 8.89E-04 |
| 20 | GO:0043022: ribosome binding | 8.89E-04 |
| 21 | GO:0015288: porin activity | 8.89E-04 |
| 22 | GO:0008308: voltage-gated anion channel activity | 1.08E-03 |
| 23 | GO:0032934: sterol binding | 1.34E-03 |
| 24 | GO:0004826: phenylalanine-tRNA ligase activity | 1.34E-03 |
| 25 | GO:0030619: U1 snRNA binding | 1.34E-03 |
| 26 | GO:0015173: aromatic amino acid transmembrane transporter activity | 1.34E-03 |
| 27 | GO:0004129: cytochrome-c oxidase activity | 2.07E-03 |
| 28 | GO:0044183: protein binding involved in protein folding | 2.07E-03 |
| 29 | GO:0070181: small ribosomal subunit rRNA binding | 2.21E-03 |
| 30 | GO:0070180: large ribosomal subunit rRNA binding | 2.21E-03 |
| 31 | GO:0005047: signal recognition particle binding | 2.21E-03 |
| 32 | GO:0003999: adenine phosphoribosyltransferase activity | 3.22E-03 |
| 33 | GO:0004550: nucleoside diphosphate kinase activity | 3.22E-03 |
| 34 | GO:0047627: adenylylsulfatase activity | 3.22E-03 |
| 35 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.51E-03 |
| 36 | GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 4.34E-03 |
| 37 | GO:0070628: proteasome binding | 4.34E-03 |
| 38 | GO:0000993: RNA polymerase II core binding | 4.34E-03 |
| 39 | GO:0010011: auxin binding | 4.34E-03 |
| 40 | GO:0046923: ER retention sequence binding | 4.34E-03 |
| 41 | GO:0003785: actin monomer binding | 5.58E-03 |
| 42 | GO:0005275: amine transmembrane transporter activity | 5.58E-03 |
| 43 | GO:0031386: protein tag | 5.58E-03 |
| 44 | GO:0003727: single-stranded RNA binding | 6.71E-03 |
| 45 | GO:0031369: translation initiation factor binding | 6.92E-03 |
| 46 | GO:0031593: polyubiquitin binding | 6.92E-03 |
| 47 | GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity | 6.92E-03 |
| 48 | GO:0051920: peroxiredoxin activity | 8.37E-03 |
| 49 | GO:0003723: RNA binding | 8.88E-03 |
| 50 | GO:0004872: receptor activity | 9.82E-03 |
| 51 | GO:0042162: telomeric DNA binding | 9.91E-03 |
| 52 | GO:0016209: antioxidant activity | 1.16E-02 |
| 53 | GO:0035064: methylated histone binding | 1.16E-02 |
| 54 | GO:0051082: unfolded protein binding | 1.52E-02 |
| 55 | GO:0008794: arsenate reductase (glutaredoxin) activity | 2.11E-02 |
| 56 | GO:0008515: sucrose transmembrane transporter activity | 2.11E-02 |
| 57 | GO:0046961: proton-transporting ATPase activity, rotational mechanism | 2.11E-02 |
| 58 | GO:0000049: tRNA binding | 2.32E-02 |
| 59 | GO:0050897: cobalt ion binding | 2.32E-02 |
| 60 | GO:0015266: protein channel activity | 2.54E-02 |
| 61 | GO:0003697: single-stranded DNA binding | 2.54E-02 |
| 62 | GO:0031072: heat shock protein binding | 2.54E-02 |
| 63 | GO:0051119: sugar transmembrane transporter activity | 3.01E-02 |
| 64 | GO:0051536: iron-sulfur cluster binding | 3.50E-02 |
| 65 | GO:0043130: ubiquitin binding | 3.50E-02 |
| 66 | GO:0005528: FK506 binding | 3.50E-02 |
| 67 | GO:0003743: translation initiation factor activity | 3.67E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016469: proton-transporting two-sector ATPase complex | 0.00E+00 |
| 2 | GO:0043186: P granule | 0.00E+00 |
| 3 | GO:0005675: holo TFIIH complex | 0.00E+00 |
| 4 | GO:0005840: ribosome | 9.89E-129 |
| 5 | GO:0022625: cytosolic large ribosomal subunit | 1.40E-109 |
| 6 | GO:0022626: cytosolic ribosome | 2.54E-104 |
| 7 | GO:0022627: cytosolic small ribosomal subunit | 1.08E-74 |
| 8 | GO:0005730: nucleolus | 2.16E-32 |
| 9 | GO:0005737: cytoplasm | 4.27E-32 |
| 10 | GO:0005829: cytosol | 1.68E-28 |
| 11 | GO:0009506: plasmodesma | 4.15E-18 |
| 12 | GO:0005774: vacuolar membrane | 8.47E-16 |
| 13 | GO:0015934: large ribosomal subunit | 3.94E-14 |
| 14 | GO:0016020: membrane | 1.13E-10 |
| 15 | GO:0015935: small ribosomal subunit | 8.09E-08 |
| 16 | GO:0005665: DNA-directed RNA polymerase II, core complex | 2.84E-07 |
| 17 | GO:0005773: vacuole | 5.34E-07 |
| 18 | GO:0005750: mitochondrial respiratory chain complex III | 5.98E-07 |
| 19 | GO:0000419: DNA-directed RNA polymerase V complex | 1.15E-06 |
| 20 | GO:0005618: cell wall | 1.36E-05 |
| 21 | GO:0005732: small nucleolar ribonucleoprotein complex | 2.35E-05 |
| 22 | GO:0005853: eukaryotic translation elongation factor 1 complex | 5.56E-05 |
| 23 | GO:0009507: chloroplast | 7.07E-05 |
| 24 | GO:0005736: DNA-directed RNA polymerase I complex | 8.93E-05 |
| 25 | GO:0005747: mitochondrial respiratory chain complex I | 9.53E-05 |
| 26 | GO:0005666: DNA-directed RNA polymerase III complex | 1.16E-04 |
| 27 | GO:0019013: viral nucleocapsid | 2.68E-04 |
| 28 | GO:0008250: oligosaccharyltransferase complex | 3.01E-04 |
| 29 | GO:0005753: mitochondrial proton-transporting ATP synthase complex | 3.70E-04 |
| 30 | GO:0045271: respiratory chain complex I | 5.59E-04 |
| 31 | GO:0032044: DSIF complex | 6.25E-04 |
| 32 | GO:0030686: 90S preribosome | 6.25E-04 |
| 33 | GO:0005742: mitochondrial outer membrane translocase complex | 1.08E-03 |
| 34 | GO:0046930: pore complex | 1.08E-03 |
| 35 | GO:0005685: U1 snRNP | 1.29E-03 |
| 36 | GO:0035145: exon-exon junction complex | 1.34E-03 |
| 37 | GO:0005697: telomerase holoenzyme complex | 1.34E-03 |
| 38 | GO:0071011: precatalytic spliceosome | 1.53E-03 |
| 39 | GO:0000418: DNA-directed RNA polymerase IV complex | 1.79E-03 |
| 40 | GO:0071013: catalytic step 2 spliceosome | 2.07E-03 |
| 41 | GO:0034719: SMN-Sm protein complex | 2.21E-03 |
| 42 | GO:0000439: core TFIIH complex | 2.21E-03 |
| 43 | GO:0005681: spliceosomal complex | 2.56E-03 |
| 44 | GO:0033180: proton-transporting V-type ATPase, V1 domain | 3.22E-03 |
| 45 | GO:1990726: Lsm1-7-Pat1 complex | 3.22E-03 |
| 46 | GO:0005886: plasma membrane | 3.31E-03 |
| 47 | GO:0005758: mitochondrial intermembrane space | 4.24E-03 |
| 48 | GO:0005682: U5 snRNP | 4.34E-03 |
| 49 | GO:0016471: vacuolar proton-transporting V-type ATPase complex | 4.34E-03 |
| 50 | GO:0070469: respiratory chain | 4.68E-03 |
| 51 | GO:0005741: mitochondrial outer membrane | 5.15E-03 |
| 52 | GO:0005687: U4 snRNP | 5.58E-03 |
| 53 | GO:0097526: spliceosomal tri-snRNP complex | 5.58E-03 |
| 54 | GO:0005746: mitochondrial respiratory chain | 5.58E-03 |
| 55 | GO:0005759: mitochondrial matrix | 6.82E-03 |
| 56 | GO:0005762: mitochondrial large ribosomal subunit | 8.37E-03 |
| 57 | GO:0005689: U12-type spliceosomal complex | 8.37E-03 |
| 58 | GO:0016272: prefoldin complex | 8.37E-03 |
| 59 | GO:0031966: mitochondrial membrane | 8.81E-03 |
| 60 | GO:0000502: proteasome complex | 9.65E-03 |
| 61 | GO:0071004: U2-type prespliceosome | 1.16E-02 |
| 62 | GO:0045273: respiratory chain complex II | 1.16E-02 |
| 63 | GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) | 1.16E-02 |
| 64 | GO:0005688: U6 snRNP | 1.16E-02 |
| 65 | GO:0046540: U4/U6 x U5 tri-snRNP complex | 1.33E-02 |
| 66 | GO:0000932: P-body | 1.53E-02 |
| 67 | GO:0005788: endoplasmic reticulum lumen | 1.62E-02 |
| 68 | GO:0015030: Cajal body | 1.70E-02 |
| 69 | GO:0005740: mitochondrial envelope | 1.90E-02 |
| 70 | GO:0005686: U2 snRNP | 1.90E-02 |
| 71 | GO:0005654: nucleoplasm | 1.95E-02 |
| 72 | GO:0005852: eukaryotic translation initiation factor 3 complex | 2.11E-02 |
| 73 | GO:0008541: proteasome regulatory particle, lid subcomplex | 2.11E-02 |
| 74 | GO:0031307: integral component of mitochondrial outer membrane | 2.32E-02 |
| 75 | GO:0005938: cell cortex | 2.54E-02 |
| 76 | GO:0009508: plastid chromosome | 2.54E-02 |
| 77 | GO:0009536: plastid | 2.70E-02 |
| 78 | GO:0005622: intracellular | 3.41E-02 |
| 79 | GO:0005777: peroxisome | 4.05E-02 |
| 80 | GO:0015629: actin cytoskeleton | 4.55E-02 |