co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G56000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
2	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
3	GO:2000505: regulation of energy homeostasis	0.00E+00
4	GO:0030155: regulation of cell adhesion	0.00E+00
5	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
6	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
7	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
8	GO:0005996: monosaccharide metabolic process	0.00E+00
9	GO:0090042: tubulin deacetylation	0.00E+00
10	GO:0006114: glycerol biosynthetic process	0.00E+00
11	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
12	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
13	GO:0010027: thylakoid membrane organization	3.18E-11
14	GO:0009773: photosynthetic electron transport in photosystem I	6.46E-09
15	GO:0015979: photosynthesis	2.52E-06
16	GO:0018026: peptidyl-lysine monomethylation	3.47E-06
17	GO:0006000: fructose metabolic process	1.24E-05
18	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.80E-05
19	GO:0010021: amylopectin biosynthetic process	5.05E-05
20	GO:0006636: unsaturated fatty acid biosynthetic process	7.75E-05
21	GO:0006418: tRNA aminoacylation for protein translation	1.06E-04
22	GO:0042549: photosystem II stabilization	1.17E-04
23	GO:0010196: nonphotochemical quenching	2.10E-04
24	GO:0043609: regulation of carbon utilization	2.75E-04
25	GO:0046167: glycerol-3-phosphate biosynthetic process	2.75E-04
26	GO:0043007: maintenance of rDNA	2.75E-04
27	GO:0034337: RNA folding	2.75E-04
28	GO:0010493: Lewis a epitope biosynthetic process	2.75E-04
29	GO:0000476: maturation of 4.5S rRNA	2.75E-04
30	GO:0006438: valyl-tRNA aminoacylation	2.75E-04
31	GO:0000967: rRNA 5'-end processing	2.75E-04
32	GO:0043953: protein transport by the Tat complex	2.75E-04
33	GO:0046520: sphingoid biosynthetic process	2.75E-04
34	GO:0000481: maturation of 5S rRNA	2.75E-04
35	GO:0042371: vitamin K biosynthetic process	2.75E-04
36	GO:0065002: intracellular protein transmembrane transport	2.75E-04
37	GO:0043686: co-translational protein modification	2.75E-04
38	GO:0006002: fructose 6-phosphate metabolic process	3.27E-04
39	GO:0032544: plastid translation	3.27E-04
40	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.04E-04
41	GO:0080181: lateral root branching	6.04E-04
42	GO:0034470: ncRNA processing	6.04E-04
43	GO:0006650: glycerophospholipid metabolic process	6.04E-04
44	GO:0006432: phenylalanyl-tRNA aminoacylation	6.04E-04
45	GO:0090342: regulation of cell aging	6.04E-04
46	GO:0015995: chlorophyll biosynthetic process	6.55E-04
47	GO:0016050: vesicle organization	9.79E-04
48	GO:0005977: glycogen metabolic process	9.79E-04
49	GO:0048281: inflorescence morphogenesis	9.79E-04
50	GO:0046168: glycerol-3-phosphate catabolic process	9.79E-04
51	GO:0090391: granum assembly	9.79E-04
52	GO:0006518: peptide metabolic process	9.79E-04
53	GO:0006020: inositol metabolic process	1.40E-03
54	GO:0006072: glycerol-3-phosphate metabolic process	1.40E-03
55	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.40E-03
56	GO:0010148: transpiration	1.40E-03
57	GO:0061077: chaperone-mediated protein folding	1.52E-03
58	GO:0006808: regulation of nitrogen utilization	1.87E-03
59	GO:0006109: regulation of carbohydrate metabolic process	1.87E-03
60	GO:0045727: positive regulation of translation	1.87E-03
61	GO:0015994: chlorophyll metabolic process	1.87E-03
62	GO:0006552: leucine catabolic process	1.87E-03
63	GO:0051205: protein insertion into membrane	1.87E-03
64	GO:0006021: inositol biosynthetic process	1.87E-03
65	GO:0016117: carotenoid biosynthetic process	2.13E-03
66	GO:0009658: chloroplast organization	2.32E-03
67	GO:0031365: N-terminal protein amino acid modification	2.39E-03
68	GO:0000304: response to singlet oxygen	2.39E-03
69	GO:0016120: carotene biosynthetic process	2.39E-03
70	GO:0032543: mitochondrial translation	2.39E-03
71	GO:0006564: L-serine biosynthetic process	2.39E-03
72	GO:0010236: plastoquinone biosynthetic process	2.39E-03
73	GO:0045038: protein import into chloroplast thylakoid membrane	2.39E-03
74	GO:0006810: transport	2.79E-03
75	GO:0019252: starch biosynthetic process	2.86E-03
76	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.95E-03
77	GO:0042793: transcription from plastid promoter	2.95E-03
78	GO:0010190: cytochrome b6f complex assembly	2.95E-03
79	GO:0046855: inositol phosphate dephosphorylation	2.95E-03
80	GO:0055114: oxidation-reduction process	3.17E-03
81	GO:0042026: protein refolding	3.55E-03
82	GO:0042372: phylloquinone biosynthetic process	3.55E-03
83	GO:0006458: 'de novo' protein folding	3.55E-03
84	GO:0030488: tRNA methylation	3.55E-03
85	GO:0010103: stomatal complex morphogenesis	4.19E-03
86	GO:0009772: photosynthetic electron transport in photosystem II	4.19E-03
87	GO:0071446: cellular response to salicylic acid stimulus	4.19E-03
88	GO:0070370: cellular heat acclimation	4.19E-03
89	GO:0022904: respiratory electron transport chain	4.19E-03
90	GO:0016559: peroxisome fission	4.86E-03
91	GO:0005978: glycogen biosynthetic process	4.86E-03
92	GO:0009642: response to light intensity	4.86E-03
93	GO:0032508: DNA duplex unwinding	4.86E-03
94	GO:0016311: dephosphorylation	5.47E-03
95	GO:0017004: cytochrome complex assembly	5.57E-03
96	GO:2000031: regulation of salicylic acid mediated signaling pathway	5.57E-03
97	GO:0001558: regulation of cell growth	5.57E-03
98	GO:0009657: plastid organization	5.57E-03
99	GO:0006633: fatty acid biosynthetic process	5.58E-03
100	GO:0010206: photosystem II repair	6.31E-03
101	GO:0006499: N-terminal protein myristoylation	6.35E-03
102	GO:0005982: starch metabolic process	7.09E-03
103	GO:0010205: photoinhibition	7.09E-03
104	GO:0009793: embryo development ending in seed dormancy	7.45E-03
105	GO:0048829: root cap development	7.90E-03
106	GO:0009698: phenylpropanoid metabolic process	8.74E-03
107	GO:0019684: photosynthesis, light reaction	8.74E-03
108	GO:0009089: lysine biosynthetic process via diaminopimelate	8.74E-03
109	GO:0009073: aromatic amino acid family biosynthetic process	8.74E-03
110	GO:0043085: positive regulation of catalytic activity	8.74E-03
111	GO:0006415: translational termination	8.74E-03
112	GO:0000272: polysaccharide catabolic process	8.74E-03
113	GO:0018119: peptidyl-cysteine S-nitrosylation	8.74E-03
114	GO:0006790: sulfur compound metabolic process	9.61E-03
115	GO:0005983: starch catabolic process	9.61E-03
116	GO:0006094: gluconeogenesis	1.05E-02
117	GO:0005986: sucrose biosynthetic process	1.05E-02
118	GO:0010628: positive regulation of gene expression	1.05E-02
119	GO:0009266: response to temperature stimulus	1.14E-02
120	GO:0006302: double-strand break repair	1.14E-02
121	GO:0010020: chloroplast fission	1.14E-02
122	GO:0010207: photosystem II assembly	1.14E-02
123	GO:0019253: reductive pentose-phosphate cycle	1.14E-02
124	GO:0046854: phosphatidylinositol phosphorylation	1.24E-02
125	GO:0005985: sucrose metabolic process	1.24E-02
126	GO:0006364: rRNA processing	1.27E-02
127	GO:0009944: polarity specification of adaxial/abaxial axis	1.44E-02
128	GO:0051302: regulation of cell division	1.55E-02
129	GO:0016575: histone deacetylation	1.55E-02
130	GO:0009768: photosynthesis, light harvesting in photosystem I	1.55E-02
131	GO:0019915: lipid storage	1.65E-02
132	GO:0031408: oxylipin biosynthetic process	1.65E-02
133	GO:0051321: meiotic cell cycle	1.65E-02
134	GO:0071369: cellular response to ethylene stimulus	1.88E-02
135	GO:0001944: vasculature development	1.88E-02
136	GO:0009561: megagametogenesis	1.99E-02
137	GO:0042631: cellular response to water deprivation	2.23E-02
138	GO:0006662: glycerol ether metabolic process	2.35E-02
139	GO:0006814: sodium ion transport	2.47E-02
140	GO:0009646: response to absence of light	2.47E-02
141	GO:0008654: phospholipid biosynthetic process	2.60E-02
142	GO:0071554: cell wall organization or biogenesis	2.73E-02
143	GO:1901657: glycosyl compound metabolic process	2.99E-02
144	GO:0009567: double fertilization forming a zygote and endosperm	3.13E-02
145	GO:0007623: circadian rhythm	3.14E-02
146	GO:0006412: translation	4.02E-02
147	GO:0018298: protein-chromophore linkage	4.29E-02
148	GO:0009735: response to cytokinin	4.30E-02
149	GO:0009813: flavonoid biosynthetic process	4.44E-02
150	GO:0009834: plant-type secondary cell wall biogenesis	4.59E-02
151	GO:0010218: response to far red light	4.59E-02
152	GO:0009631: cold acclimation	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
2	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
3	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
6	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
7	GO:0051721: protein phosphatase 2A binding	0.00E+00
8	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
9	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
10	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
11	GO:0042903: tubulin deacetylase activity	0.00E+00
12	GO:0016166: phytoene dehydrogenase activity	0.00E+00
13	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
14	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
15	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
16	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
17	GO:0043014: alpha-tubulin binding	0.00E+00
18	GO:0048039: ubiquinone binding	0.00E+00
19	GO:0004823: leucine-tRNA ligase activity	0.00E+00
20	GO:0016279: protein-lysine N-methyltransferase activity	5.05E-05
21	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	5.05E-05
22	GO:0005528: FK506 binding	9.09E-05
23	GO:2001070: starch binding	1.17E-04
24	GO:0004812: aminoacyl-tRNA ligase activity	2.00E-04
25	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.36E-04
26	GO:0000170: sphingosine hydroxylase activity	2.75E-04
27	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.75E-04
28	GO:0046920: alpha-(1->3)-fucosyltransferase activity	2.75E-04
29	GO:0050308: sugar-phosphatase activity	2.75E-04
30	GO:0019203: carbohydrate phosphatase activity	2.75E-04
31	GO:0042586: peptide deformylase activity	2.75E-04
32	GO:0045485: omega-6 fatty acid desaturase activity	2.75E-04
33	GO:0004832: valine-tRNA ligase activity	2.75E-04
34	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.75E-04
35	GO:0047746: chlorophyllase activity	6.04E-04
36	GO:0042389: omega-3 fatty acid desaturase activity	6.04E-04
37	GO:0010297: heteropolysaccharide binding	6.04E-04
38	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.04E-04
39	GO:0004617: phosphoglycerate dehydrogenase activity	6.04E-04
40	GO:0052832: inositol monophosphate 3-phosphatase activity	6.04E-04
41	GO:0004312: fatty acid synthase activity	6.04E-04
42	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.04E-04
43	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	6.04E-04
44	GO:0042284: sphingolipid delta-4 desaturase activity	6.04E-04
45	GO:0008934: inositol monophosphate 1-phosphatase activity	6.04E-04
46	GO:0003844: 1,4-alpha-glucan branching enzyme activity	6.04E-04
47	GO:0052833: inositol monophosphate 4-phosphatase activity	6.04E-04
48	GO:0004826: phenylalanine-tRNA ligase activity	6.04E-04
49	GO:0019156: isoamylase activity	6.04E-04
50	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	6.04E-04
51	GO:0016787: hydrolase activity	7.35E-04
52	GO:0019843: rRNA binding	7.39E-04
53	GO:0031072: heat shock protein binding	8.15E-04
54	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	9.79E-04
55	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	9.79E-04
56	GO:0043169: cation binding	9.79E-04
57	GO:0017150: tRNA dihydrouridine synthase activity	9.79E-04
58	GO:0002161: aminoacyl-tRNA editing activity	9.79E-04
59	GO:0005504: fatty acid binding	9.79E-04
60	GO:0004751: ribose-5-phosphate isomerase activity	9.79E-04
61	GO:0008508: bile acid:sodium symporter activity	1.40E-03
62	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.40E-03
63	GO:0048487: beta-tubulin binding	1.40E-03
64	GO:0016149: translation release factor activity, codon specific	1.40E-03
65	GO:0016851: magnesium chelatase activity	1.40E-03
66	GO:0004659: prenyltransferase activity	1.87E-03
67	GO:0004045: aminoacyl-tRNA hydrolase activity	1.87E-03
68	GO:0045430: chalcone isomerase activity	1.87E-03
69	GO:0019199: transmembrane receptor protein kinase activity	1.87E-03
70	GO:0042277: peptide binding	1.87E-03
71	GO:0016491: oxidoreductase activity	2.19E-03
72	GO:0004040: amidase activity	2.39E-03
73	GO:0004556: alpha-amylase activity	2.95E-03
74	GO:0048038: quinone binding	3.06E-03
75	GO:0051082: unfolded protein binding	3.13E-03
76	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.55E-03
77	GO:0004017: adenylate kinase activity	3.55E-03
78	GO:0004033: aldo-keto reductase (NADP) activity	4.86E-03
79	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	5.57E-03
80	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.57E-03
81	GO:0008173: RNA methyltransferase activity	5.57E-03
82	GO:0003747: translation release factor activity	6.31E-03
83	GO:0008417: fucosyltransferase activity	6.31E-03
84	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	6.31E-03
85	GO:0008047: enzyme activator activity	7.90E-03
86	GO:0044183: protein binding involved in protein folding	8.74E-03
87	GO:0047372: acylglycerol lipase activity	8.74E-03
88	GO:0000049: tRNA binding	9.61E-03
89	GO:0004565: beta-galactosidase activity	1.05E-02
90	GO:0051287: NAD binding	1.14E-02
91	GO:0004190: aspartic-type endopeptidase activity	1.24E-02
92	GO:0003887: DNA-directed DNA polymerase activity	1.34E-02
93	GO:0031409: pigment binding	1.34E-02
94	GO:0004857: enzyme inhibitor activity	1.44E-02
95	GO:0004407: histone deacetylase activity	1.44E-02
96	GO:0008408: 3'-5' exonuclease activity	1.65E-02
97	GO:0003756: protein disulfide isomerase activity	1.99E-02
98	GO:0047134: protein-disulfide reductase activity	2.11E-02
99	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.34E-02
100	GO:0004791: thioredoxin-disulfide reductase activity	2.47E-02
101	GO:0050662: coenzyme binding	2.47E-02
102	GO:0009055: electron carrier activity	2.58E-02
103	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.99E-02
104	GO:0003684: damaged DNA binding	3.13E-02
105	GO:0008017: microtubule binding	3.29E-02
106	GO:0016413: O-acetyltransferase activity	3.41E-02
107	GO:0016597: amino acid binding	3.41E-02
108	GO:0016168: chlorophyll binding	3.69E-02
109	GO:0042802: identical protein binding	3.99E-02
110	GO:0102483: scopolin beta-glucosidase activity	3.99E-02
111	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.29E-02
112	GO:0015238: drug transmembrane transporter activity	4.44E-02
113	GO:0004222: metalloendopeptidase activity	4.59E-02
114	GO:0008168: methyltransferase activity	4.66E-02
115	GO:0030145: manganese ion binding	4.75E-02
116	GO:0000287: magnesium ion binding	4.75E-02
117	GO:0016788: hydrolase activity, acting on ester bonds	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
4	GO:0010368: chloroplast isoamylase complex	0.00E+00
5	GO:0009507: chloroplast	4.61E-56
6	GO:0009534: chloroplast thylakoid	9.41E-28
7	GO:0009570: chloroplast stroma	4.15E-25
8	GO:0009535: chloroplast thylakoid membrane	8.73E-23
9	GO:0009941: chloroplast envelope	1.67E-16
10	GO:0009543: chloroplast thylakoid lumen	5.55E-11
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.69E-07
12	GO:0009579: thylakoid	1.55E-06
13	GO:0000427: plastid-encoded plastid RNA polymerase complex	3.47E-06
14	GO:0031977: thylakoid lumen	1.19E-05
15	GO:0009508: plastid chromosome	4.47E-05
16	GO:0009654: photosystem II oxygen evolving complex	1.06E-04
17	GO:0031969: chloroplast membrane	1.30E-04
18	GO:0031361: integral component of thylakoid membrane	2.75E-04
19	GO:0000791: euchromatin	2.75E-04
20	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.75E-04
21	GO:0009515: granal stacked thylakoid	2.75E-04
22	GO:0019898: extrinsic component of membrane	3.00E-04
23	GO:0009295: nucleoid	4.58E-04
24	GO:0009706: chloroplast inner membrane	5.24E-04
25	GO:0030870: Mre11 complex	6.04E-04
26	GO:0010287: plastoglobule	6.80E-04
27	GO:0030095: chloroplast photosystem II	9.17E-04
28	GO:0010007: magnesium chelatase complex	9.79E-04
29	GO:0033281: TAT protein transport complex	9.79E-04
30	GO:0009509: chromoplast	9.79E-04
31	GO:0042651: thylakoid membrane	1.38E-03
32	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.40E-03
33	GO:0030660: Golgi-associated vesicle membrane	1.87E-03
34	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.87E-03
35	GO:0000795: synaptonemal complex	2.39E-03
36	GO:0010319: stromule	3.93E-03
37	GO:0005840: ribosome	4.41E-03
38	GO:0009501: amyloplast	4.86E-03
39	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	4.86E-03
40	GO:0031305: integral component of mitochondrial inner membrane	4.86E-03
41	GO:0055028: cortical microtubule	7.90E-03
42	GO:0005740: mitochondrial envelope	7.90E-03
43	GO:0005765: lysosomal membrane	8.74E-03
44	GO:0032040: small-subunit processome	9.61E-03
45	GO:0030076: light-harvesting complex	1.24E-02
46	GO:0043234: protein complex	1.34E-02
47	GO:0009522: photosystem I	2.47E-02
48	GO:0000785: chromatin	2.86E-02
49	GO:0032580: Golgi cisterna membrane	3.13E-02
50	GO:0030529: intracellular ribonucleoprotein complex	3.55E-02
51	GO:0009707: chloroplast outer membrane	4.29E-02
52	GO:0015934: large ribosomal subunit	4.75E-02