co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G55730

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006592: ornithine biosynthetic process	0.00E+00
2	GO:0015833: peptide transport	0.00E+00
3	GO:0001789: G-protein coupled receptor signaling pathway, coupled to S1P second messenger	0.00E+00
4	GO:0030149: sphingolipid catabolic process	0.00E+00
5	GO:0009398: FMN biosynthetic process	0.00E+00
6	GO:1901799: negative regulation of proteasomal protein catabolic process	0.00E+00
7	GO:0001881: receptor recycling	0.00E+00
8	GO:0006511: ubiquitin-dependent protein catabolic process	2.29E-28
9	GO:0051603: proteolysis involved in cellular protein catabolic process	5.00E-10
10	GO:0046686: response to cadmium ion	2.19E-09
11	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	6.35E-07
12	GO:0051788: response to misfolded protein	1.85E-06
13	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	9.07E-06
14	GO:0043248: proteasome assembly	6.86E-05
15	GO:0030433: ubiquitin-dependent ERAD pathway	6.94E-05
16	GO:0009554: megasporogenesis	9.52E-05
17	GO:0035266: meristem growth	1.98E-04
18	GO:0007292: female gamete generation	1.98E-04
19	GO:0010365: positive regulation of ethylene biosynthetic process	1.98E-04
20	GO:0010265: SCF complex assembly	1.98E-04
21	GO:0061014: positive regulation of mRNA catabolic process	1.98E-04
22	GO:0042964: thioredoxin reduction	1.98E-04
23	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	1.98E-04
24	GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic	1.98E-04
25	GO:0030163: protein catabolic process	2.08E-04
26	GO:0072593: reactive oxygen species metabolic process	3.97E-04
27	GO:0006212: uracil catabolic process	4.43E-04
28	GO:0019483: beta-alanine biosynthetic process	4.43E-04
29	GO:0015786: UDP-glucose transport	4.43E-04
30	GO:0019752: carboxylic acid metabolic process	4.43E-04
31	GO:0042939: tripeptide transport	4.43E-04
32	GO:0043132: NAD transport	4.43E-04
33	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	4.43E-04
34	GO:0046939: nucleotide phosphorylation	4.43E-04
35	GO:0010043: response to zinc ion	4.93E-04
36	GO:0006807: nitrogen compound metabolic process	5.18E-04
37	GO:0060968: regulation of gene silencing	7.22E-04
38	GO:0008333: endosome to lysosome transport	7.22E-04
39	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	7.22E-04
40	GO:0043617: cellular response to sucrose starvation	7.22E-04
41	GO:0055074: calcium ion homeostasis	7.22E-04
42	GO:0044375: regulation of peroxisome size	7.22E-04
43	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	7.22E-04
44	GO:0015783: GDP-fucose transport	7.22E-04
45	GO:0006166: purine ribonucleoside salvage	1.03E-03
46	GO:0006571: tyrosine biosynthetic process	1.03E-03
47	GO:0072334: UDP-galactose transmembrane transport	1.03E-03
48	GO:0009647: skotomorphogenesis	1.03E-03
49	GO:0010587: miRNA catabolic process	1.03E-03
50	GO:0015858: nucleoside transport	1.03E-03
51	GO:0006168: adenine salvage	1.03E-03
52	GO:0001676: long-chain fatty acid metabolic process	1.03E-03
53	GO:0046836: glycolipid transport	1.03E-03
54	GO:0009413: response to flooding	1.03E-03
55	GO:0042147: retrograde transport, endosome to Golgi	1.34E-03
56	GO:0010363: regulation of plant-type hypersensitive response	1.37E-03
57	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	1.37E-03
58	GO:0042938: dipeptide transport	1.37E-03
59	GO:0044209: AMP salvage	1.74E-03
60	GO:0045116: protein neddylation	1.74E-03
61	GO:0098719: sodium ion import across plasma membrane	1.74E-03
62	GO:0036065: fucosylation	1.74E-03
63	GO:0006564: L-serine biosynthetic process	1.74E-03
64	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.74E-03
65	GO:0048232: male gamete generation	2.14E-03
66	GO:0048831: regulation of shoot system development	2.14E-03
67	GO:0048827: phyllome development	2.14E-03
68	GO:0006914: autophagy	2.32E-03
69	GO:1901001: negative regulation of response to salt stress	2.57E-03
70	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.57E-03
71	GO:0009612: response to mechanical stimulus	2.57E-03
72	GO:0009094: L-phenylalanine biosynthetic process	2.57E-03
73	GO:0016579: protein deubiquitination	2.61E-03
74	GO:0009610: response to symbiotic fungus	3.03E-03
75	GO:0048528: post-embryonic root development	3.03E-03
76	GO:0006744: ubiquinone biosynthetic process	3.03E-03
77	GO:0070370: cellular heat acclimation	3.03E-03
78	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	3.03E-03
79	GO:0010044: response to aluminum ion	3.03E-03
80	GO:0016049: cell growth	3.41E-03
81	GO:0006644: phospholipid metabolic process	3.51E-03
82	GO:0006402: mRNA catabolic process	3.51E-03
83	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.51E-03
84	GO:0009690: cytokinin metabolic process	3.51E-03
85	GO:0010078: maintenance of root meristem identity	3.51E-03
86	GO:0031540: regulation of anthocyanin biosynthetic process	3.51E-03
87	GO:0040029: regulation of gene expression, epigenetic	3.51E-03
88	GO:0009231: riboflavin biosynthetic process	3.51E-03
89	GO:0006102: isocitrate metabolic process	3.51E-03
90	GO:0006499: N-terminal protein myristoylation	3.95E-03
91	GO:0019430: removal of superoxide radicals	4.02E-03
92	GO:0007186: G-protein coupled receptor signaling pathway	4.02E-03
93	GO:0006526: arginine biosynthetic process	4.02E-03
94	GO:0043562: cellular response to nitrogen levels	4.02E-03
95	GO:0046685: response to arsenic-containing substance	4.54E-03
96	GO:0009821: alkaloid biosynthetic process	4.54E-03
97	GO:0045087: innate immune response	4.54E-03
98	GO:0010449: root meristem growth	5.10E-03
99	GO:0051453: regulation of intracellular pH	5.10E-03
100	GO:0006631: fatty acid metabolic process	5.39E-03
101	GO:0043069: negative regulation of programmed cell death	5.67E-03
102	GO:0048829: root cap development	5.67E-03
103	GO:0008283: cell proliferation	5.85E-03
104	GO:0009926: auxin polar transport	5.85E-03
105	GO:0009651: response to salt stress	5.88E-03
106	GO:0010015: root morphogenesis	6.27E-03
107	GO:0048229: gametophyte development	6.27E-03
108	GO:0009636: response to toxic substance	6.57E-03
109	GO:0009965: leaf morphogenesis	6.57E-03
110	GO:0006790: sulfur compound metabolic process	6.89E-03
111	GO:0045037: protein import into chloroplast stroma	6.89E-03
112	GO:0016925: protein sumoylation	6.89E-03
113	GO:0071365: cellular response to auxin stimulus	6.89E-03
114	GO:0009785: blue light signaling pathway	7.52E-03
115	GO:0006486: protein glycosylation	7.88E-03
116	GO:0007034: vacuolar transport	8.19E-03
117	GO:0009933: meristem structural organization	8.19E-03
118	GO:0009969: xyloglucan biosynthetic process	8.87E-03
119	GO:0090351: seedling development	8.87E-03
120	GO:0046854: phosphatidylinositol phosphorylation	8.87E-03
121	GO:0034976: response to endoplasmic reticulum stress	9.57E-03
122	GO:0045454: cell redox homeostasis	9.88E-03
123	GO:0006457: protein folding	9.99E-03
124	GO:0009116: nucleoside metabolic process	1.03E-02
125	GO:0006289: nucleotide-excision repair	1.03E-02
126	GO:0006487: protein N-linked glycosylation	1.03E-02
127	GO:0009553: embryo sac development	1.09E-02
128	GO:0008299: isoprenoid biosynthetic process	1.10E-02
129	GO:0061077: chaperone-mediated protein folding	1.18E-02
130	GO:0015992: proton transport	1.18E-02
131	GO:0030245: cellulose catabolic process	1.26E-02
132	GO:0009408: response to heat	1.29E-02
133	GO:0071215: cellular response to abscisic acid stimulus	1.34E-02
134	GO:0001944: vasculature development	1.34E-02
135	GO:0048364: root development	1.36E-02
136	GO:0042127: regulation of cell proliferation	1.42E-02
137	GO:0009058: biosynthetic process	1.49E-02
138	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.50E-02
139	GO:0010118: stomatal movement	1.59E-02
140	GO:0000413: protein peptidyl-prolyl isomerization	1.59E-02
141	GO:0010051: xylem and phloem pattern formation	1.59E-02
142	GO:0008360: regulation of cell shape	1.67E-02
143	GO:0006520: cellular amino acid metabolic process	1.67E-02
144	GO:0010197: polar nucleus fusion	1.67E-02
145	GO:0048868: pollen tube development	1.67E-02
146	GO:0009646: response to absence of light	1.76E-02
147	GO:0006814: sodium ion transport	1.76E-02
148	GO:0006623: protein targeting to vacuole	1.85E-02
149	GO:0048825: cotyledon development	1.85E-02
150	GO:0009749: response to glucose	1.85E-02
151	GO:0008654: phospholipid biosynthetic process	1.85E-02
152	GO:0009556: microsporogenesis	1.85E-02
153	GO:0080156: mitochondrial mRNA modification	1.94E-02
154	GO:0010193: response to ozone	1.94E-02
155	GO:0010150: leaf senescence	1.95E-02
156	GO:0009630: gravitropism	2.04E-02
157	GO:0009567: double fertilization forming a zygote and endosperm	2.23E-02
158	GO:0010286: heat acclimation	2.33E-02
159	GO:0071805: potassium ion transmembrane transport	2.33E-02
160	GO:0009735: response to cytokinin	2.38E-02
161	GO:0009793: embryo development ending in seed dormancy	2.39E-02
162	GO:0010027: thylakoid membrane organization	2.53E-02
163	GO:0009615: response to virus	2.53E-02
164	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.63E-02
165	GO:0015031: protein transport	2.79E-02
166	GO:0009817: defense response to fungus, incompatible interaction	3.05E-02
167	GO:0008219: cell death	3.05E-02
168	GO:0048767: root hair elongation	3.16E-02
169	GO:0009832: plant-type cell wall biogenesis	3.16E-02
170	GO:0010311: lateral root formation	3.16E-02
171	GO:0009407: toxin catabolic process	3.27E-02
172	GO:0010119: regulation of stomatal movement	3.38E-02
173	GO:0009723: response to ethylene	3.49E-02
174	GO:0006865: amino acid transport	3.50E-02
175	GO:0006099: tricarboxylic acid cycle	3.73E-02
176	GO:0016192: vesicle-mediated transport	3.93E-02
177	GO:0006839: mitochondrial transport	3.96E-02
178	GO:0055114: oxidation-reduction process	4.05E-02
179	GO:0009744: response to sucrose	4.32E-02
180	GO:0006855: drug transmembrane transport	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0008531: riboflavin kinase activity	0.00E+00
2	GO:0016881: acid-amino acid ligase activity	0.00E+00
3	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
4	GO:0003837: beta-ureidopropionase activity	0.00E+00
5	GO:0052873: FMN reductase (NADPH) activity	0.00E+00
6	GO:0015197: peptide transporter activity	0.00E+00
7	GO:0016247: channel regulator activity	0.00E+00
8	GO:0015334: high-affinity oligopeptide transporter activity	0.00E+00
9	GO:0005095: GTPase inhibitor activity	0.00E+00
10	GO:0044610: FMN transmembrane transporter activity	0.00E+00
11	GO:0008777: acetylornithine deacetylase activity	0.00E+00
12	GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity	0.00E+00
13	GO:0008752: FMN reductase activity	0.00E+00
14	GO:0004298: threonine-type endopeptidase activity	1.27E-33
15	GO:0008233: peptidase activity	3.30E-20
16	GO:0036402: proteasome-activating ATPase activity	6.35E-07
17	GO:0017025: TBP-class protein binding	3.13E-05
18	GO:0031593: polyubiquitin binding	6.86E-05
19	GO:0010013: N-1-naphthylphthalamic acid binding	1.98E-04
20	GO:0050200: plasmalogen synthase activity	1.98E-04
21	GO:0070401: NADP+ binding	1.98E-04
22	GO:0015230: FAD transmembrane transporter activity	1.98E-04
23	GO:0019786: Atg8-specific protease activity	1.98E-04
24	GO:0016229: steroid dehydrogenase activity	1.98E-04
25	GO:0008417: fucosyltransferase activity	2.45E-04
26	GO:0016887: ATPase activity	2.85E-04
27	GO:0019781: NEDD8 activating enzyme activity	4.43E-04
28	GO:0004617: phosphoglycerate dehydrogenase activity	4.43E-04
29	GO:0051724: NAD transporter activity	4.43E-04
30	GO:0050347: trans-octaprenyltranstransferase activity	4.43E-04
31	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	4.43E-04
32	GO:0003919: FMN adenylyltransferase activity	4.43E-04
33	GO:0004534: 5'-3' exoribonuclease activity	4.43E-04
34	GO:0019779: Atg8 activating enzyme activity	4.43E-04
35	GO:0042937: tripeptide transporter activity	4.43E-04
36	GO:0008517: folic acid transporter activity	4.43E-04
37	GO:0015228: coenzyme A transmembrane transporter activity	4.43E-04
38	GO:0001664: G-protein coupled receptor binding	7.22E-04
39	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	7.22E-04
40	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	7.22E-04
41	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	7.22E-04
42	GO:0004148: dihydrolipoyl dehydrogenase activity	7.22E-04
43	GO:0031683: G-protein beta/gamma-subunit complex binding	7.22E-04
44	GO:0005457: GDP-fucose transmembrane transporter activity	7.22E-04
45	GO:0043130: ubiquitin binding	8.01E-04
46	GO:0017089: glycolipid transporter activity	1.03E-03
47	GO:0019201: nucleotide kinase activity	1.03E-03
48	GO:0003999: adenine phosphoribosyltransferase activity	1.03E-03
49	GO:0005460: UDP-glucose transmembrane transporter activity	1.03E-03
50	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.03E-03
51	GO:0008409: 5'-3' exonuclease activity	1.37E-03
52	GO:0042936: dipeptide transporter activity	1.37E-03
53	GO:0051861: glycolipid binding	1.37E-03
54	GO:0070628: proteasome binding	1.37E-03
55	GO:0004576: oligosaccharyl transferase activity	1.37E-03
56	GO:0019776: Atg8 ligase activity	1.37E-03
57	GO:0004659: prenyltransferase activity	1.37E-03
58	GO:0005459: UDP-galactose transmembrane transporter activity	1.74E-03
59	GO:0008641: small protein activating enzyme activity	1.74E-03
60	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.74E-03
61	GO:0080122: AMP transmembrane transporter activity	1.74E-03
62	GO:0004040: amidase activity	1.74E-03
63	GO:0031386: protein tag	1.74E-03
64	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.92E-03
65	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	2.14E-03
66	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	2.14E-03
67	GO:0051020: GTPase binding	2.57E-03
68	GO:0015217: ADP transmembrane transporter activity	2.57E-03
69	GO:0004017: adenylate kinase activity	2.57E-03
70	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.57E-03
71	GO:0102391: decanoate--CoA ligase activity	2.57E-03
72	GO:0005347: ATP transmembrane transporter activity	2.57E-03
73	GO:0004656: procollagen-proline 4-dioxygenase activity	2.57E-03
74	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	3.03E-03
75	GO:0016831: carboxy-lyase activity	3.03E-03
76	GO:0004467: long-chain fatty acid-CoA ligase activity	3.03E-03
77	GO:0052747: sinapyl alcohol dehydrogenase activity	3.51E-03
78	GO:0004033: aldo-keto reductase (NADP) activity	3.51E-03
79	GO:0000989: transcription factor activity, transcription factor binding	4.54E-03
80	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.65E-03
81	GO:0045309: protein phosphorylated amino acid binding	5.10E-03
82	GO:0016844: strictosidine synthase activity	5.10E-03
83	GO:0004161: dimethylallyltranstransferase activity	6.27E-03
84	GO:0015386: potassium:proton antiporter activity	6.27E-03
85	GO:0019904: protein domain specific binding	6.27E-03
86	GO:0008327: methyl-CpG binding	6.27E-03
87	GO:0004177: aminopeptidase activity	6.27E-03
88	GO:0008559: xenobiotic-transporting ATPase activity	6.27E-03
89	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.82E-03
90	GO:0045551: cinnamyl-alcohol dehydrogenase activity	6.89E-03
91	GO:0051287: NAD binding	7.08E-03
92	GO:0031072: heat shock protein binding	7.52E-03
93	GO:0004175: endopeptidase activity	8.19E-03
94	GO:0004190: aspartic-type endopeptidase activity	8.87E-03
95	GO:0031418: L-ascorbic acid binding	1.03E-02
96	GO:0005528: FK506 binding	1.03E-02
97	GO:0005524: ATP binding	1.11E-02
98	GO:0051082: unfolded protein binding	1.12E-02
99	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.18E-02
100	GO:0008810: cellulase activity	1.34E-02
101	GO:0008514: organic anion transmembrane transporter activity	1.42E-02
102	GO:0003756: protein disulfide isomerase activity	1.42E-02
103	GO:0030170: pyridoxal phosphate binding	1.57E-02
104	GO:0004791: thioredoxin-disulfide reductase activity	1.76E-02
105	GO:0016853: isomerase activity	1.76E-02
106	GO:0010181: FMN binding	1.76E-02
107	GO:0015385: sodium:proton antiporter activity	2.13E-02
108	GO:0003684: damaged DNA binding	2.23E-02
109	GO:0008237: metallopeptidase activity	2.33E-02
110	GO:0016597: amino acid binding	2.42E-02
111	GO:0046982: protein heterodimerization activity	2.96E-02
112	GO:0000287: magnesium ion binding	2.96E-02
113	GO:0046872: metal ion binding	3.38E-02
114	GO:0050897: cobalt ion binding	3.38E-02
115	GO:0003746: translation elongation factor activity	3.61E-02
116	GO:0003697: single-stranded DNA binding	3.61E-02
117	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.61E-02
118	GO:0005507: copper ion binding	4.12E-02
119	GO:0004364: glutathione transferase activity	4.20E-02
120	GO:0043621: protein self-association	4.57E-02
121	GO:0005198: structural molecule activity	4.70E-02
122	GO:0008270: zinc ion binding	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	2.22E-45
2	GO:0005839: proteasome core complex	1.27E-33
3	GO:0019773: proteasome core complex, alpha-subunit complex	2.56E-15
4	GO:0005829: cytosol	6.53E-14
5	GO:0005774: vacuolar membrane	6.09E-11
6	GO:0031597: cytosolic proteasome complex	1.12E-06
7	GO:0031595: nuclear proteasome complex	1.82E-06
8	GO:0005737: cytoplasm	3.10E-06
9	GO:0046861: glyoxysomal membrane	6.80E-06
10	GO:0005838: proteasome regulatory particle	6.80E-06
11	GO:0008540: proteasome regulatory particle, base subcomplex	7.78E-06
12	GO:0008541: proteasome regulatory particle, lid subcomplex	1.33E-05
13	GO:0005783: endoplasmic reticulum	1.46E-05
14	GO:0000325: plant-type vacuole	4.05E-05
15	GO:0030904: retromer complex	6.86E-05
16	GO:0005773: vacuole	7.41E-05
17	GO:0000421: autophagosome membrane	1.62E-04
18	GO:0019774: proteasome core complex, beta-subunit complex	1.98E-04
19	GO:0009514: glyoxysome	2.01E-04
20	GO:0032580: Golgi cisterna membrane	2.27E-04
21	GO:0005886: plasma membrane	8.21E-04
22	GO:0005775: vacuolar lumen	1.03E-03
23	GO:0031410: cytoplasmic vesicle	1.05E-03
24	GO:0005844: polysome	1.37E-03
25	GO:0005776: autophagosome	1.37E-03
26	GO:0008250: oligosaccharyltransferase complex	1.74E-03
27	GO:0005771: multivesicular body	2.14E-03
28	GO:0005788: endoplasmic reticulum lumen	2.91E-03
29	GO:0005759: mitochondrial matrix	3.05E-03
30	GO:0005779: integral component of peroxisomal membrane	4.02E-03
31	GO:0005794: Golgi apparatus	4.25E-03
32	GO:0010494: cytoplasmic stress granule	4.54E-03
33	GO:0031902: late endosome membrane	5.39E-03
34	GO:0022626: cytosolic ribosome	6.32E-03
35	GO:0005777: peroxisome	8.33E-03
36	GO:0005769: early endosome	9.57E-03
37	GO:0010008: endosome membrane	9.63E-03
38	GO:0005834: heterotrimeric G-protein complex	9.94E-03
39	GO:0005758: mitochondrial intermembrane space	1.03E-02
40	GO:0070469: respiratory chain	1.10E-02
41	GO:0005789: endoplasmic reticulum membrane	1.18E-02
42	GO:0009705: plant-type vacuole membrane	1.95E-02
43	GO:0016592: mediator complex	2.04E-02
44	GO:0009506: plasmodesma	2.14E-02
45	GO:0005778: peroxisomal membrane	2.33E-02
46	GO:0000932: P-body	2.53E-02
47	GO:0005634: nucleus	3.37E-02
48	GO:0005874: microtubule	3.61E-02
49	GO:0005819: spindle	3.84E-02
50	GO:0005802: trans-Golgi network	4.75E-02