co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G55370

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0031116: positive regulation of microtubule polymerization	0.00E+00
2	GO:0080127: fruit septum development	0.00E+00
3	GO:0042493: response to drug	0.00E+00
4	GO:0061157: mRNA destabilization	0.00E+00
5	GO:1901259: chloroplast rRNA processing	5.74E-05
6	GO:0048507: meristem development	1.53E-04
7	GO:0006949: syncytium formation	2.18E-04
8	GO:0080181: lateral root branching	3.29E-04
9	GO:2000012: regulation of auxin polar transport	3.34E-04
10	GO:0001578: microtubule bundle formation	5.40E-04
11	GO:0005977: glycogen metabolic process	5.40E-04
12	GO:0009664: plant-type cell wall organization	5.82E-04
13	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	7.50E-04
14	GO:0009650: UV protection	7.73E-04
15	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	7.73E-04
16	GO:0010239: chloroplast mRNA processing	7.73E-04
17	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	7.73E-04
18	GO:0007020: microtubule nucleation	1.02E-03
19	GO:0010021: amylopectin biosynthetic process	1.02E-03
20	GO:0051322: anaphase	1.02E-03
21	GO:0022622: root system development	1.02E-03
22	GO:0046785: microtubule polymerization	1.29E-03
23	GO:0016558: protein import into peroxisome matrix	1.29E-03
24	GO:0006564: L-serine biosynthetic process	1.29E-03
25	GO:0009828: plant-type cell wall loosening	1.50E-03
26	GO:0032973: amino acid export	1.59E-03
27	GO:0010190: cytochrome b6f complex assembly	1.59E-03
28	GO:0003006: developmental process involved in reproduction	1.59E-03
29	GO:0010189: vitamin E biosynthetic process	1.91E-03
30	GO:0009451: RNA modification	2.01E-03
31	GO:0032880: regulation of protein localization	2.24E-03
32	GO:0048528: post-embryonic root development	2.24E-03
33	GO:0043090: amino acid import	2.24E-03
34	GO:0070413: trehalose metabolism in response to stress	2.60E-03
35	GO:0006605: protein targeting	2.60E-03
36	GO:0010492: maintenance of shoot apical meristem identity	2.60E-03
37	GO:0009826: unidimensional cell growth	3.23E-03
38	GO:0080144: amino acid homeostasis	3.35E-03
39	GO:0006098: pentose-phosphate shunt	3.35E-03
40	GO:1903507: negative regulation of nucleic acid-templated transcription	4.61E-03
41	GO:0009750: response to fructose	4.61E-03
42	GO:0010582: floral meristem determinacy	5.06E-03
43	GO:0005975: carbohydrate metabolic process	5.31E-03
44	GO:0006094: gluconeogenesis	5.52E-03
45	GO:0010207: photosystem II assembly	6.00E-03
46	GO:0048467: gynoecium development	6.00E-03
47	GO:0019853: L-ascorbic acid biosynthetic process	6.50E-03
48	GO:0010030: positive regulation of seed germination	6.50E-03
49	GO:0009740: gibberellic acid mediated signaling pathway	6.76E-03
50	GO:0006863: purine nucleobase transport	7.00E-03
51	GO:0005992: trehalose biosynthetic process	7.52E-03
52	GO:0009742: brassinosteroid mediated signaling pathway	7.61E-03
53	GO:0043622: cortical microtubule organization	8.06E-03
54	GO:0048511: rhythmic process	8.61E-03
55	GO:2000022: regulation of jasmonic acid mediated signaling pathway	9.17E-03
56	GO:0009411: response to UV	9.75E-03
57	GO:0006012: galactose metabolic process	9.75E-03
58	GO:0006284: base-excision repair	1.03E-02
59	GO:0009306: protein secretion	1.03E-02
60	GO:0008284: positive regulation of cell proliferation	1.09E-02
61	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.09E-02
62	GO:0009793: embryo development ending in seed dormancy	1.11E-02
63	GO:0042631: cellular response to water deprivation	1.16E-02
64	GO:0040008: regulation of growth	1.19E-02
65	GO:0009958: positive gravitropism	1.22E-02
66	GO:0048868: pollen tube development	1.22E-02
67	GO:0046323: glucose import	1.22E-02
68	GO:0009741: response to brassinosteroid	1.22E-02
69	GO:0007018: microtubule-based movement	1.28E-02
70	GO:0006814: sodium ion transport	1.28E-02
71	GO:0042752: regulation of circadian rhythm	1.28E-02
72	GO:0009749: response to glucose	1.35E-02
73	GO:0019252: starch biosynthetic process	1.35E-02
74	GO:0008654: phospholipid biosynthetic process	1.35E-02
75	GO:0010193: response to ozone	1.41E-02
76	GO:0006635: fatty acid beta-oxidation	1.41E-02
77	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.41E-02
78	GO:0007166: cell surface receptor signaling pathway	1.42E-02
79	GO:0016032: viral process	1.48E-02
80	GO:0032502: developmental process	1.48E-02
81	GO:0009416: response to light stimulus	1.51E-02
82	GO:0000910: cytokinesis	1.76E-02
83	GO:0001666: response to hypoxia	1.84E-02
84	GO:0010027: thylakoid membrane organization	1.84E-02
85	GO:0009627: systemic acquired resistance	1.99E-02
86	GO:0016311: dephosphorylation	2.14E-02
87	GO:0009817: defense response to fungus, incompatible interaction	2.22E-02
88	GO:0048527: lateral root development	2.46E-02
89	GO:0015979: photosynthesis	2.73E-02
90	GO:0009640: photomorphogenesis	3.15E-02
91	GO:0008283: cell proliferation	3.15E-02
92	GO:0009744: response to sucrose	3.15E-02
93	GO:0006281: DNA repair	3.53E-02
94	GO:0031347: regulation of defense response	3.60E-02
95	GO:0016310: phosphorylation	3.78E-02
96	GO:0010224: response to UV-B	3.98E-02
97	GO:0006096: glycolytic process	4.38E-02
98	GO:0009553: embryo sac development	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0042623: ATPase activity, coupled	0.00E+00
2	GO:0010276: phytol kinase activity	0.00E+00
3	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
4	GO:0047911: galacturan 1,4-alpha-galacturonidase activity	1.44E-04
5	GO:0019156: isoamylase activity	3.29E-04
6	GO:0004617: phosphoglycerate dehydrogenase activity	3.29E-04
7	GO:0008508: bile acid:sodium symporter activity	7.73E-04
8	GO:0005354: galactose transmembrane transporter activity	7.73E-04
9	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.02E-03
10	GO:0008725: DNA-3-methyladenine glycosylase activity	1.29E-03
11	GO:0042578: phosphoric ester hydrolase activity	1.59E-03
12	GO:0004556: alpha-amylase activity	1.59E-03
13	GO:0004462: lactoylglutathione lyase activity	1.59E-03
14	GO:0004605: phosphatidate cytidylyltransferase activity	1.59E-03
15	GO:0004332: fructose-bisphosphate aldolase activity	1.59E-03
16	GO:0008195: phosphatidate phosphatase activity	1.91E-03
17	GO:0004033: aldo-keto reductase (NADP) activity	2.60E-03
18	GO:0003993: acid phosphatase activity	3.05E-03
19	GO:0004805: trehalose-phosphatase activity	4.18E-03
20	GO:0015020: glucuronosyltransferase activity	4.18E-03
21	GO:0004521: endoribonuclease activity	5.06E-03
22	GO:0004871: signal transducer activity	5.93E-03
23	GO:0008083: growth factor activity	6.00E-03
24	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	6.00E-03
25	GO:0003714: transcription corepressor activity	7.52E-03
26	GO:0005345: purine nucleobase transmembrane transporter activity	8.06E-03
27	GO:0004519: endonuclease activity	8.12E-03
28	GO:0003727: single-stranded RNA binding	1.03E-02
29	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.16E-02
30	GO:0005355: glucose transmembrane transporter activity	1.28E-02
31	GO:0008017: microtubule binding	1.30E-02
32	GO:0003723: RNA binding	1.35E-02
33	GO:0048038: quinone binding	1.41E-02
34	GO:0016791: phosphatase activity	1.62E-02
35	GO:0016597: amino acid binding	1.76E-02
36	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.22E-02
37	GO:0005096: GTPase activator activity	2.30E-02
38	GO:0043621: protein self-association	3.33E-02
39	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.51E-02
40	GO:0051287: NAD binding	3.60E-02
41	GO:0003777: microtubule motor activity	4.18E-02
42	GO:0015171: amino acid transmembrane transporter activity	4.18E-02
43	GO:0004650: polygalacturonase activity	4.68E-02
44	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.68E-02
45	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.68E-02
46	GO:0016874: ligase activity	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	6.98E-08
3	GO:0009543: chloroplast thylakoid lumen	1.70E-04
4	GO:0009535: chloroplast thylakoid membrane	2.44E-04
5	GO:0009531: secondary cell wall	7.73E-04
6	GO:0042646: plastid nucleoid	7.73E-04
7	GO:0072686: mitotic spindle	1.29E-03
8	GO:0010005: cortical microtubule, transverse to long axis	1.91E-03
9	GO:0009538: photosystem I reaction center	2.60E-03
10	GO:0042644: chloroplast nucleoid	3.35E-03
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.35E-03
12	GO:0055028: cortical microtubule	4.18E-03
13	GO:0090404: pollen tube tip	4.61E-03
14	GO:0005938: cell cortex	5.52E-03
15	GO:0009574: preprophase band	5.52E-03
16	GO:0030095: chloroplast photosystem II	6.00E-03
17	GO:0009654: photosystem II oxygen evolving complex	8.06E-03
18	GO:0043231: intracellular membrane-bounded organelle	8.26E-03
19	GO:0005871: kinesin complex	1.09E-02
20	GO:0019898: extrinsic component of membrane	1.35E-02
21	GO:0016592: mediator complex	1.48E-02
22	GO:0005778: peroxisomal membrane	1.69E-02
23	GO:0009579: thylakoid	1.90E-02
24	GO:0005874: microtubule	2.31E-02
25	GO:0031225: anchored component of membrane	2.65E-02
26	GO:0005819: spindle	2.80E-02
27	GO:0031977: thylakoid lumen	2.97E-02