Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G55090

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0016553: base conversion or substitution editing0.00E+00
2GO:0019323: pentose catabolic process0.00E+00
3GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
4GO:0009877: nodulation0.00E+00
5GO:0010378: temperature compensation of the circadian clock0.00E+00
6GO:0009409: response to cold1.30E-06
7GO:0005978: glycogen biosynthetic process3.96E-06
8GO:0043489: RNA stabilization1.87E-05
9GO:0044262: cellular carbohydrate metabolic process1.87E-05
10GO:0032958: inositol phosphate biosynthetic process1.87E-05
11GO:0005980: glycogen catabolic process1.87E-05
12GO:0009735: response to cytokinin3.72E-05
13GO:0019252: starch biosynthetic process7.95E-05
14GO:0009052: pentose-phosphate shunt, non-oxidative branch1.30E-04
15GO:0006424: glutamyl-tRNA aminoacylation1.30E-04
16GO:0006020: inositol metabolic process1.30E-04
17GO:0009817: defense response to fungus, incompatible interaction1.72E-04
18GO:2000122: negative regulation of stomatal complex development1.78E-04
19GO:0010037: response to carbon dioxide1.78E-04
20GO:0015976: carbon utilization1.78E-04
21GO:0019464: glycine decarboxylation via glycine cleavage system1.78E-04
22GO:0045727: positive regulation of translation1.78E-04
23GO:0032543: mitochondrial translation2.30E-04
24GO:0048578: positive regulation of long-day photoperiodism, flowering2.30E-04
25GO:0006544: glycine metabolic process2.30E-04
26GO:0006563: L-serine metabolic process2.85E-04
27GO:0010304: PSII associated light-harvesting complex II catabolic process2.85E-04
28GO:0046686: response to cadmium ion3.29E-04
29GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)3.42E-04
30GO:0009861: jasmonic acid and ethylene-dependent systemic resistance3.42E-04
31GO:0048564: photosystem I assembly4.64E-04
32GO:0032544: plastid translation5.27E-04
33GO:0010206: photosystem II repair5.93E-04
34GO:0010205: photoinhibition6.61E-04
35GO:0035999: tetrahydrofolate interconversion6.61E-04
36GO:0072593: reactive oxygen species metabolic process8.02E-04
37GO:0018119: peptidyl-cysteine S-nitrosylation8.02E-04
38GO:0016485: protein processing8.02E-04
39GO:0007623: circadian rhythm9.17E-04
40GO:0019253: reductive pentose-phosphate cycle1.02E-03
41GO:0009833: plant-type primary cell wall biogenesis1.18E-03
42GO:0030245: cellulose catabolic process1.52E-03
43GO:0042752: regulation of circadian rhythm2.09E-03
44GO:0030163: protein catabolic process2.50E-03
45GO:0010027: thylakoid membrane organization2.94E-03
46GO:0048573: photoperiodism, flowering3.28E-03
47GO:0030244: cellulose biosynthetic process3.51E-03
48GO:0009832: plant-type cell wall biogenesis3.63E-03
49GO:0010218: response to far red light3.76E-03
50GO:0010119: regulation of stomatal movement3.88E-03
51GO:0009631: cold acclimation3.88E-03
52GO:0045087: innate immune response4.13E-03
53GO:0009637: response to blue light4.13E-03
54GO:0009853: photorespiration4.13E-03
55GO:0042542: response to hydrogen peroxide4.77E-03
56GO:0006364: rRNA processing6.02E-03
57GO:0009585: red, far-red light phototransduction6.02E-03
58GO:0006096: glycolytic process6.76E-03
59GO:0009626: plant-type hypersensitive response7.07E-03
60GO:0009624: response to nematode7.69E-03
61GO:0006396: RNA processing7.85E-03
62GO:0071555: cell wall organization8.89E-03
63GO:0006412: translation1.01E-02
64GO:0015031: protein transport1.13E-02
65GO:0009451: RNA modification1.15E-02
66GO:0080167: response to karrikin1.79E-02
67GO:0015979: photosynthesis1.97E-02
68GO:0045454: cell redox homeostasis2.03E-02
69GO:0009793: embryo development ending in seed dormancy2.07E-02
70GO:0006281: DNA repair2.36E-02
71GO:0006397: mRNA processing2.43E-02
72GO:0008152: metabolic process2.53E-02
73GO:0006508: proteolysis2.75E-02
74GO:0009908: flower development3.31E-02
75GO:0009416: response to light stimulus3.55E-02
76GO:0045893: positive regulation of transcription, DNA-templated3.92E-02
77GO:0055085: transmembrane transport4.21E-02
RankGO TermAdjusted P value
1GO:0008266: poly(U) RNA binding1.14E-07
2GO:0008878: glucose-1-phosphate adenylyltransferase activity5.27E-07
3GO:0004645: phosphorylase activity1.87E-05
4GO:0033857: diphosphoinositol-pentakisphosphate kinase activity1.87E-05
5GO:0000829: inositol heptakisphosphate kinase activity1.87E-05
6GO:0008184: glycogen phosphorylase activity1.87E-05
7GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity1.87E-05
8GO:0000828: inositol hexakisphosphate kinase activity1.87E-05
9GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity1.87E-05
10GO:0004618: phosphoglycerate kinase activity4.85E-05
11GO:0004750: ribulose-phosphate 3-epimerase activity4.85E-05
12GO:0004222: metalloendopeptidase activity1.91E-04
13GO:0004372: glycine hydroxymethyltransferase activity2.30E-04
14GO:0004602: glutathione peroxidase activity3.42E-04
15GO:0051920: peroxiredoxin activity3.42E-04
16GO:0016209: antioxidant activity4.64E-04
17GO:0019843: rRNA binding6.76E-04
18GO:0030170: pyridoxal phosphate binding7.47E-04
19GO:0015386: potassium:proton antiporter activity8.02E-04
20GO:0004089: carbonate dehydratase activity9.49E-04
21GO:0015079: potassium ion transmembrane transporter activity1.35E-03
22GO:0004176: ATP-dependent peptidase activity1.44E-03
23GO:0008810: cellulase activity1.61E-03
24GO:0016760: cellulose synthase (UDP-forming) activity1.61E-03
25GO:0003729: mRNA binding2.07E-03
26GO:0050662: coenzyme binding2.09E-03
27GO:0016759: cellulose synthase activity2.61E-03
28GO:0008237: metallopeptidase activity2.72E-03
29GO:0003735: structural constituent of ribosome2.99E-03
30GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.34E-02
31GO:0004601: peroxidase activity1.54E-02
32GO:0005524: ATP binding1.74E-02
33GO:0008233: peptidase activity1.77E-02
34GO:0004519: endonuclease activity2.51E-02
35GO:0016757: transferase activity, transferring glycosyl groups3.04E-02
36GO:0016887: ATPase activity3.23E-02
37GO:0046872: metal ion binding3.83E-02
38GO:0016740: transferase activity4.09E-02
39GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.33E-02
RankGO TermAdjusted P value
1GO:0030931: heterotetrameric ADPG pyrophosphorylase complex0.00E+00
2GO:0009941: chloroplast envelope2.19E-19
3GO:0009570: chloroplast stroma2.86E-18
4GO:0009507: chloroplast9.69E-12
5GO:0009579: thylakoid2.66E-09
6GO:0010319: stromule1.37E-08
7GO:0048046: apoplast1.58E-06
8GO:0009534: chloroplast thylakoid3.20E-06
9GO:0009535: chloroplast thylakoid membrane5.71E-06
10GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex1.87E-05
11GO:0009533: chloroplast stromal thylakoid4.02E-04
12GO:0010287: plastoglobule6.42E-04
13GO:0005759: mitochondrial matrix8.40E-04
14GO:0000311: plastid large ribosomal subunit8.75E-04
15GO:0000312: plastid small ribosomal subunit1.02E-03
16GO:0016020: membrane2.19E-03
17GO:0030529: intracellular ribonucleoprotein complex2.94E-03
18GO:0031977: thylakoid lumen4.64E-03
19GO:0009706: chloroplast inner membrane7.69E-03
20GO:0005654: nucleoplasm8.83E-03
21GO:0009543: chloroplast thylakoid lumen8.99E-03
22GO:0022627: cytosolic small ribosomal subunit1.37E-02
23GO:0031969: chloroplast membrane1.79E-02
24GO:0022626: cytosolic ribosome3.44E-02
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Gene type



Gene DE type