co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G54790

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0009715: chalcone biosynthetic process	0.00E+00
3	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
4	GO:1904966: positive regulation of vitamin E biosynthetic process	1.13E-05
5	GO:1904964: positive regulation of phytol biosynthetic process	1.13E-05
6	GO:0009629: response to gravity	3.00E-05
7	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.00E-05
8	GO:0005977: glycogen metabolic process	5.40E-05
9	GO:0009052: pentose-phosphate shunt, non-oxidative branch	8.23E-05
10	GO:2001141: regulation of RNA biosynthetic process	8.23E-05
11	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	8.23E-05
12	GO:0006020: inositol metabolic process	8.23E-05
13	GO:0006021: inositol biosynthetic process	1.14E-04
14	GO:0010021: amylopectin biosynthetic process	1.14E-04
15	GO:0042549: photosystem II stabilization	1.86E-04
16	GO:0046855: inositol phosphate dephosphorylation	1.86E-04
17	GO:0030091: protein repair	3.08E-04
18	GO:0031540: regulation of anthocyanin biosynthetic process	3.08E-04
19	GO:0009231: riboflavin biosynthetic process	3.08E-04
20	GO:0048564: photosystem I assembly	3.08E-04
21	GO:0009642: response to light intensity	3.08E-04
22	GO:0017004: cytochrome complex assembly	3.52E-04
23	GO:0071482: cellular response to light stimulus	3.52E-04
24	GO:0006352: DNA-templated transcription, initiation	5.39E-04
25	GO:0018119: peptidyl-cysteine S-nitrosylation	5.39E-04
26	GO:0006790: sulfur compound metabolic process	5.89E-04
27	GO:0046854: phosphatidylinositol phosphorylation	7.45E-04
28	GO:0015979: photosynthesis	1.07E-03
29	GO:0048868: pollen tube development	1.33E-03
30	GO:0019252: starch biosynthetic process	1.46E-03
31	GO:0016311: dephosphorylation	2.25E-03
32	GO:0018298: protein-chromophore linkage	2.32E-03
33	GO:0009817: defense response to fungus, incompatible interaction	2.32E-03
34	GO:0009813: flavonoid biosynthetic process	2.40E-03
35	GO:0009867: jasmonic acid mediated signaling pathway	2.72E-03
36	GO:0009637: response to blue light	2.72E-03
37	GO:0009853: photorespiration	2.72E-03
38	GO:0006457: protein folding	3.07E-03
39	GO:0010114: response to red light	3.23E-03
40	GO:0009926: auxin polar transport	3.23E-03
41	GO:0010224: response to UV-B	4.05E-03
42	GO:0006979: response to oxidative stress	4.82E-03
43	GO:0009553: embryo sac development	4.93E-03
44	GO:0009790: embryo development	6.54E-03
45	GO:0006413: translational initiation	6.99E-03
46	GO:0009451: RNA modification	7.46E-03
47	GO:0009658: chloroplast organization	9.96E-03
48	GO:0009793: embryo development ending in seed dormancy	1.11E-02
49	GO:0009753: response to jasmonic acid	1.60E-02
50	GO:0009555: pollen development	2.29E-02
51	GO:0009611: response to wounding	2.33E-02
52	GO:0055085: transmembrane transport	2.72E-02
53	GO:0009733: response to auxin	4.12E-02
54	GO:0055114: oxidation-reduction process	4.23E-02
55	GO:0006810: transport	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
2	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
3	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
4	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
5	GO:0019156: isoamylase activity	3.00E-05
6	GO:0052832: inositol monophosphate 3-phosphatase activity	3.00E-05
7	GO:0008934: inositol monophosphate 1-phosphatase activity	3.00E-05
8	GO:0052833: inositol monophosphate 4-phosphatase activity	3.00E-05
9	GO:0004751: ribose-5-phosphate isomerase activity	5.40E-05
10	GO:0001053: plastid sigma factor activity	1.14E-04
11	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.14E-04
12	GO:0008453: alanine-glyoxylate transaminase activity	1.14E-04
13	GO:0016987: sigma factor activity	1.14E-04
14	GO:0043495: protein anchor	1.14E-04
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.77E-04
16	GO:0004556: alpha-amylase activity	1.86E-04
17	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.25E-04
18	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.25E-04
19	GO:0019899: enzyme binding	2.66E-04
20	GO:0022891: substrate-specific transmembrane transporter activity	1.08E-03
21	GO:0048038: quinone binding	1.52E-03
22	GO:0016168: chlorophyll binding	2.02E-03
23	GO:0003993: acid phosphatase activity	2.80E-03
24	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.95E-03
25	GO:0019843: rRNA binding	5.87E-03
26	GO:0003743: translation initiation factor activity	8.18E-03
27	GO:0042802: identical protein binding	8.67E-03
28	GO:0004722: protein serine/threonine phosphatase activity	1.40E-02
29	GO:0003924: GTPase activity	1.53E-02
30	GO:0004519: endonuclease activity	1.62E-02
31	GO:0008289: lipid binding	1.93E-02
32	GO:0016740: transferase activity	2.64E-02
33	GO:0005525: GTP binding	3.27E-02
34	GO:0005509: calcium ion binding	3.58E-02
35	GO:0016491: oxidoreductase activity	4.62E-02
36	GO:0004672: protein kinase activity	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009349: riboflavin synthase complex	0.00E+00
3	GO:0009507: chloroplast	1.64E-13
4	GO:0009535: chloroplast thylakoid membrane	7.86E-07
5	GO:0009570: chloroplast stroma	1.76E-05
6	GO:0031977: thylakoid lumen	1.37E-04
7	GO:0009543: chloroplast thylakoid lumen	3.70E-04
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.97E-04
9	GO:0042651: thylakoid membrane	9.08E-04
10	GO:0009654: photosystem II oxygen evolving complex	9.08E-04
11	GO:0009523: photosystem II	1.46E-03
12	GO:0019898: extrinsic component of membrane	1.46E-03
13	GO:0009579: thylakoid	2.84E-03
14	GO:0009534: chloroplast thylakoid	2.87E-03
15	GO:0009941: chloroplast envelope	3.97E-03
16	GO:0009705: plant-type vacuole membrane	7.34E-03
17	GO:0005777: peroxisome	2.53E-02