co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G54575

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010234: anther wall tapetum cell fate specification	0.00E+00
2	GO:0010398: xylogalacturonan metabolic process	0.00E+00
3	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
4	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
5	GO:0044843: cell cycle G1/S phase transition	0.00E+00
6	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
7	GO:0046487: glyoxylate metabolic process	0.00E+00
8	GO:0030149: sphingolipid catabolic process	0.00E+00
9	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
10	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
11	GO:0006412: translation	2.45E-09
12	GO:0009735: response to cytokinin	8.09E-07
13	GO:0001676: long-chain fatty acid metabolic process	1.69E-05
14	GO:0006626: protein targeting to mitochondrion	2.33E-05
15	GO:0042254: ribosome biogenesis	2.79E-05
16	GO:0030150: protein import into mitochondrial matrix	4.88E-05
17	GO:0006564: L-serine biosynthetic process	5.00E-05
18	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	2.06E-04
19	GO:0006106: fumarate metabolic process	2.06E-04
20	GO:1990542: mitochondrial transmembrane transport	2.06E-04
21	GO:0009820: alkaloid metabolic process	2.06E-04
22	GO:0010365: positive regulation of ethylene biosynthetic process	2.06E-04
23	GO:0000494: box C/D snoRNA 3'-end processing	2.06E-04
24	GO:0046256: 2,4,6-trinitrotoluene catabolic process	2.06E-04
25	GO:1901430: positive regulation of syringal lignin biosynthetic process	2.06E-04
26	GO:0032365: intracellular lipid transport	2.06E-04
27	GO:1901349: glucosinolate transport	2.06E-04
28	GO:0090449: phloem glucosinolate loading	2.06E-04
29	GO:1990258: histone glutamine methylation	2.06E-04
30	GO:0042964: thioredoxin reduction	2.06E-04
31	GO:1990069: stomatal opening	4.62E-04
32	GO:0045901: positive regulation of translational elongation	4.62E-04
33	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	4.62E-04
34	GO:0006452: translational frameshifting	4.62E-04
35	GO:0009967: positive regulation of signal transduction	4.62E-04
36	GO:0015786: UDP-glucose transport	4.62E-04
37	GO:0019752: carboxylic acid metabolic process	4.62E-04
38	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	4.62E-04
39	GO:0045905: positive regulation of translational termination	4.62E-04
40	GO:0006820: anion transport	4.85E-04
41	GO:0006413: translational initiation	5.79E-04
42	GO:0006099: tricarboxylic acid cycle	6.35E-04
43	GO:0015783: GDP-fucose transport	7.52E-04
44	GO:0009410: response to xenobiotic stimulus	7.52E-04
45	GO:0008652: cellular amino acid biosynthetic process	7.52E-04
46	GO:0006511: ubiquitin-dependent protein catabolic process	8.05E-04
47	GO:0009793: embryo development ending in seed dormancy	9.65E-04
48	GO:0046513: ceramide biosynthetic process	1.07E-03
49	GO:0046836: glycolipid transport	1.07E-03
50	GO:0009413: response to flooding	1.07E-03
51	GO:0033617: mitochondrial respiratory chain complex IV assembly	1.07E-03
52	GO:0072334: UDP-galactose transmembrane transport	1.07E-03
53	GO:0010971: positive regulation of G2/M transition of mitotic cell cycle	1.07E-03
54	GO:0032981: mitochondrial respiratory chain complex I assembly	1.07E-03
55	GO:0006364: rRNA processing	1.19E-03
56	GO:0055114: oxidation-reduction process	1.31E-03
57	GO:0051781: positive regulation of cell division	1.43E-03
58	GO:0051365: cellular response to potassium ion starvation	1.43E-03
59	GO:0042274: ribosomal small subunit biogenesis	1.43E-03
60	GO:0008033: tRNA processing	1.54E-03
61	GO:1902183: regulation of shoot apical meristem development	1.81E-03
62	GO:0045116: protein neddylation	1.81E-03
63	GO:0031167: rRNA methylation	1.81E-03
64	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.81E-03
65	GO:0010183: pollen tube guidance	1.91E-03
66	GO:0010193: response to ozone	2.04E-03
67	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.24E-03
68	GO:0048831: regulation of shoot system development	2.24E-03
69	GO:0009228: thiamine biosynthetic process	2.24E-03
70	GO:0009651: response to salt stress	2.34E-03
71	GO:0006869: lipid transport	2.61E-03
72	GO:0009554: megasporogenesis	2.69E-03
73	GO:0009648: photoperiodism	2.69E-03
74	GO:0009955: adaxial/abaxial pattern specification	2.69E-03
75	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.69E-03
76	GO:0030643: cellular phosphate ion homeostasis	2.69E-03
77	GO:0000054: ribosomal subunit export from nucleus	2.69E-03
78	GO:0042744: hydrogen peroxide catabolic process	2.91E-03
79	GO:0006401: RNA catabolic process	3.16E-03
80	GO:0009610: response to symbiotic fungus	3.16E-03
81	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	3.16E-03
82	GO:0000338: protein deneddylation	3.16E-03
83	GO:1900057: positive regulation of leaf senescence	3.16E-03
84	GO:0050829: defense response to Gram-negative bacterium	3.16E-03
85	GO:0040008: regulation of growth	3.51E-03
86	GO:0006102: isocitrate metabolic process	3.67E-03
87	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.67E-03
88	GO:0009642: response to light intensity	3.67E-03
89	GO:0022900: electron transport chain	4.20E-03
90	GO:0001558: regulation of cell growth	4.20E-03
91	GO:0019430: removal of superoxide radicals	4.20E-03
92	GO:0001510: RNA methylation	4.20E-03
93	GO:0006811: ion transport	4.21E-03
94	GO:0015780: nucleotide-sugar transport	4.75E-03
95	GO:0046685: response to arsenic-containing substance	4.75E-03
96	GO:0009051: pentose-phosphate shunt, oxidative branch	4.75E-03
97	GO:0090305: nucleic acid phosphodiester bond hydrolysis	4.75E-03
98	GO:0006754: ATP biosynthetic process	4.75E-03
99	GO:0042761: very long-chain fatty acid biosynthetic process	5.32E-03
100	GO:0006631: fatty acid metabolic process	5.75E-03
101	GO:0006032: chitin catabolic process	5.93E-03
102	GO:0008283: cell proliferation	6.23E-03
103	GO:0006979: response to oxidative stress	6.39E-03
104	GO:0010015: root morphogenesis	6.55E-03
105	GO:0006913: nucleocytoplasmic transport	6.55E-03
106	GO:0072593: reactive oxygen species metabolic process	6.55E-03
107	GO:0009682: induced systemic resistance	6.55E-03
108	GO:0015770: sucrose transport	6.55E-03
109	GO:0000272: polysaccharide catabolic process	6.55E-03
110	GO:0045037: protein import into chloroplast stroma	7.20E-03
111	GO:0009846: pollen germination	7.82E-03
112	GO:0006108: malate metabolic process	7.87E-03
113	GO:0006006: glucose metabolic process	7.87E-03
114	GO:0006807: nitrogen compound metabolic process	7.87E-03
115	GO:0009809: lignin biosynthetic process	8.40E-03
116	GO:0002237: response to molecule of bacterial origin	8.56E-03
117	GO:0051603: proteolysis involved in cellular protein catabolic process	8.70E-03
118	GO:0090351: seedling development	9.27E-03
119	GO:0000162: tryptophan biosynthetic process	1.00E-02
120	GO:0048367: shoot system development	1.03E-02
121	GO:0000027: ribosomal large subunit assembly	1.08E-02
122	GO:0009863: salicylic acid mediated signaling pathway	1.08E-02
123	GO:0006289: nucleotide-excision repair	1.08E-02
124	GO:0051302: regulation of cell division	1.15E-02
125	GO:0015992: proton transport	1.23E-02
126	GO:0051260: protein homooligomerization	1.23E-02
127	GO:0048511: rhythmic process	1.23E-02
128	GO:0010431: seed maturation	1.23E-02
129	GO:0007005: mitochondrion organization	1.32E-02
130	GO:0080092: regulation of pollen tube growth	1.32E-02
131	GO:0030245: cellulose catabolic process	1.32E-02
132	GO:0009814: defense response, incompatible interaction	1.32E-02
133	GO:0030433: ubiquitin-dependent ERAD pathway	1.32E-02
134	GO:0046686: response to cadmium ion	1.36E-02
135	GO:0040007: growth	1.40E-02
136	GO:0071215: cellular response to abscisic acid stimulus	1.40E-02
137	GO:0010089: xylem development	1.48E-02
138	GO:0010584: pollen exine formation	1.48E-02
139	GO:0009561: megagametogenesis	1.48E-02
140	GO:0009058: biosynthetic process	1.59E-02
141	GO:0009845: seed germination	1.63E-02
142	GO:0010118: stomatal movement	1.66E-02
143	GO:0006606: protein import into nucleus	1.66E-02
144	GO:0015991: ATP hydrolysis coupled proton transport	1.66E-02
145	GO:0042631: cellular response to water deprivation	1.66E-02
146	GO:0010197: polar nucleus fusion	1.75E-02
147	GO:0048868: pollen tube development	1.75E-02
148	GO:0006520: cellular amino acid metabolic process	1.75E-02
149	GO:0045489: pectin biosynthetic process	1.75E-02
150	GO:0009556: microsporogenesis	1.94E-02
151	GO:0006623: protein targeting to vacuole	1.94E-02
152	GO:0009749: response to glucose	1.94E-02
153	GO:0007275: multicellular organism development	2.02E-02
154	GO:0006635: fatty acid beta-oxidation	2.03E-02
155	GO:0000302: response to reactive oxygen species	2.03E-02
156	GO:0030163: protein catabolic process	2.23E-02
157	GO:0009617: response to bacterium	2.48E-02
158	GO:0010029: regulation of seed germination	2.75E-02
159	GO:0009611: response to wounding	2.96E-02
160	GO:0016311: dephosphorylation	3.08E-02
161	GO:0016049: cell growth	3.08E-02
162	GO:0009817: defense response to fungus, incompatible interaction	3.19E-02
163	GO:0009409: response to cold	3.36E-02
164	GO:0009407: toxin catabolic process	3.42E-02
165	GO:0009860: pollen tube growth	3.46E-02
166	GO:0010119: regulation of stomatal movement	3.54E-02
167	GO:0009631: cold acclimation	3.54E-02
168	GO:0009853: photorespiration	3.78E-02
169	GO:0055085: transmembrane transport	3.87E-02
170	GO:0042542: response to hydrogen peroxide	4.40E-02
171	GO:0009640: photomorphogenesis	4.52E-02
172	GO:0045454: cell redox homeostasis	4.75E-02
173	GO:0008643: carbohydrate transport	4.78E-02
174	GO:0009636: response to toxic substance	4.91E-02
175	GO:0009965: leaf morphogenesis	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0008752: FMN reductase activity	0.00E+00
2	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
3	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
4	GO:0016881: acid-amino acid ligase activity	0.00E+00
5	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
6	GO:0052873: FMN reductase (NADPH) activity	0.00E+00
7	GO:0003796: lysozyme activity	0.00E+00
8	GO:0003735: structural constituent of ribosome	9.58E-14
9	GO:0004298: threonine-type endopeptidase activity	1.91E-06
10	GO:0004617: phosphoglycerate dehydrogenase activity	2.01E-06
11	GO:0102391: decanoate--CoA ligase activity	1.02E-04
12	GO:0004467: long-chain fatty acid-CoA ligase activity	1.35E-04
13	GO:0015288: porin activity	1.73E-04
14	GO:0090448: glucosinolate:proton symporter activity	2.06E-04
15	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.06E-04
16	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	2.06E-04
17	GO:0004128: cytochrome-b5 reductase activity, acting on NAD(P)H	2.06E-04
18	GO:1990259: histone-glutamine methyltransferase activity	2.06E-04
19	GO:0004333: fumarate hydratase activity	2.06E-04
20	GO:0000824: inositol tetrakisphosphate 3-kinase activity	2.06E-04
21	GO:0047326: inositol tetrakisphosphate 5-kinase activity	2.06E-04
22	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	2.06E-04
23	GO:0004048: anthranilate phosphoribosyltransferase activity	2.06E-04
24	GO:0008135: translation factor activity, RNA binding	2.15E-04
25	GO:0008308: voltage-gated anion channel activity	2.15E-04
26	GO:0003729: mRNA binding	3.27E-04
27	GO:0050291: sphingosine N-acyltransferase activity	4.62E-04
28	GO:0004618: phosphoglycerate kinase activity	4.62E-04
29	GO:0019781: NEDD8 activating enzyme activity	4.62E-04
30	GO:0032934: sterol binding	4.62E-04
31	GO:0019172: glyoxalase III activity	4.62E-04
32	GO:0005078: MAP-kinase scaffold activity	4.62E-04
33	GO:0008517: folic acid transporter activity	4.62E-04
34	GO:0003746: translation elongation factor activity	6.01E-04
35	GO:0005457: GDP-fucose transmembrane transporter activity	7.52E-04
36	GO:0015462: ATPase-coupled protein transmembrane transporter activity	7.52E-04
37	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	7.52E-04
38	GO:0008649: rRNA methyltransferase activity	7.52E-04
39	GO:0003743: translation initiation factor activity	8.16E-04
40	GO:0051287: NAD binding	1.04E-03
41	GO:0008097: 5S rRNA binding	1.07E-03
42	GO:0017077: oxidative phosphorylation uncoupler activity	1.07E-03
43	GO:0017089: glycolipid transporter activity	1.07E-03
44	GO:0019201: nucleotide kinase activity	1.07E-03
45	GO:0005460: UDP-glucose transmembrane transporter activity	1.07E-03
46	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.07E-03
47	GO:0004601: peroxidase activity	1.24E-03
48	GO:0015368: calcium:cation antiporter activity	1.43E-03
49	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.43E-03
50	GO:0051861: glycolipid binding	1.43E-03
51	GO:0015369: calcium:proton antiporter activity	1.43E-03
52	GO:0070628: proteasome binding	1.43E-03
53	GO:0019199: transmembrane receptor protein kinase activity	1.43E-03
54	GO:0008233: peptidase activity	1.67E-03
55	GO:0004791: thioredoxin-disulfide reductase activity	1.78E-03
56	GO:0010181: FMN binding	1.78E-03
57	GO:0005459: UDP-galactose transmembrane transporter activity	1.81E-03
58	GO:0008641: small protein activating enzyme activity	1.81E-03
59	GO:0005496: steroid binding	1.81E-03
60	GO:0031593: polyubiquitin binding	2.24E-03
61	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	2.24E-03
62	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	2.24E-03
63	GO:0035252: UDP-xylosyltransferase activity	2.24E-03
64	GO:0036402: proteasome-activating ATPase activity	2.24E-03
65	GO:0004017: adenylate kinase activity	2.69E-03
66	GO:0004656: procollagen-proline 4-dioxygenase activity	2.69E-03
67	GO:0016597: amino acid binding	2.77E-03
68	GO:0016831: carboxy-lyase activity	3.16E-03
69	GO:0005338: nucleotide-sugar transmembrane transporter activity	3.16E-03
70	GO:0008235: metalloexopeptidase activity	3.16E-03
71	GO:0043295: glutathione binding	3.16E-03
72	GO:0030515: snoRNA binding	3.16E-03
73	GO:0052747: sinapyl alcohol dehydrogenase activity	3.67E-03
74	GO:0043022: ribosome binding	3.67E-03
75	GO:0015491: cation:cation antiporter activity	3.67E-03
76	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.82E-03
77	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	4.75E-03
78	GO:0000989: transcription factor activity, transcription factor binding	4.75E-03
79	GO:0008289: lipid binding	5.14E-03
80	GO:0045309: protein phosphorylated amino acid binding	5.32E-03
81	GO:0004568: chitinase activity	5.93E-03
82	GO:0008559: xenobiotic-transporting ATPase activity	6.55E-03
83	GO:0008515: sucrose transmembrane transporter activity	6.55E-03
84	GO:0019904: protein domain specific binding	6.55E-03
85	GO:0045551: cinnamyl-alcohol dehydrogenase activity	7.20E-03
86	GO:0005515: protein binding	7.44E-03
87	GO:0015266: protein channel activity	7.87E-03
88	GO:0008131: primary amine oxidase activity	8.56E-03
89	GO:0017025: TBP-class protein binding	9.27E-03
90	GO:0051119: sugar transmembrane transporter activity	9.27E-03
91	GO:0031418: L-ascorbic acid binding	1.08E-02
92	GO:0043130: ubiquitin binding	1.08E-02
93	GO:0003714: transcription corepressor activity	1.08E-02
94	GO:0051087: chaperone binding	1.15E-02
95	GO:0020037: heme binding	1.39E-02
96	GO:0008810: cellulase activity	1.40E-02
97	GO:0003924: GTPase activity	1.40E-02
98	GO:0008514: organic anion transmembrane transporter activity	1.48E-02
99	GO:0019843: rRNA binding	1.50E-02
100	GO:0047134: protein-disulfide reductase activity	1.57E-02
101	GO:0005525: GTP binding	1.58E-02
102	GO:0030170: pyridoxal phosphate binding	1.67E-02
103	GO:0005199: structural constituent of cell wall	1.75E-02
104	GO:0048038: quinone binding	2.03E-02
105	GO:0004518: nuclease activity	2.13E-02
106	GO:0003684: damaged DNA binding	2.33E-02
107	GO:0016791: phosphatase activity	2.33E-02
108	GO:0016887: ATPase activity	2.43E-02
109	GO:0000166: nucleotide binding	2.88E-02
110	GO:0046982: protein heterodimerization activity	3.16E-02
111	GO:0000287: magnesium ion binding	3.16E-02
112	GO:0004222: metalloendopeptidase activity	3.42E-02
113	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.78E-02
114	GO:0003993: acid phosphatase activity	3.90E-02
115	GO:0008422: beta-glucosidase activity	4.02E-02
116	GO:0050661: NADP binding	4.15E-02
117	GO:0051539: 4 iron, 4 sulfur cluster binding	4.15E-02
118	GO:0004364: glutathione transferase activity	4.40E-02
119	GO:0005507: copper ion binding	4.45E-02
120	GO:0005198: structural molecule activity	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0022626: cytosolic ribosome	1.37E-12
2	GO:0022627: cytosolic small ribosomal subunit	1.51E-10
3	GO:0005829: cytosol	6.67E-10
4	GO:0009506: plasmodesma	1.48E-08
5	GO:0005840: ribosome	3.50E-08
6	GO:0005730: nucleolus	5.27E-08
7	GO:0016020: membrane	3.37E-07
8	GO:0022625: cytosolic large ribosomal subunit	3.82E-07
9	GO:0005774: vacuolar membrane	4.35E-07
10	GO:0000502: proteasome complex	5.20E-07
11	GO:0005839: proteasome core complex	1.91E-06
12	GO:0005886: plasma membrane	2.69E-06
13	GO:0005618: cell wall	5.65E-06
14	GO:0005741: mitochondrial outer membrane	6.62E-05
15	GO:0045239: tricarboxylic acid cycle enzyme complex	2.06E-04
16	GO:0045252: oxoglutarate dehydrogenase complex	2.06E-04
17	GO:0046930: pore complex	2.15E-04
18	GO:0019773: proteasome core complex, alpha-subunit complex	2.15E-04
19	GO:0005773: vacuole	3.25E-04
20	GO:0046861: glyoxysomal membrane	7.52E-04
21	GO:0005758: mitochondrial intermembrane space	8.52E-04
22	GO:0005794: Golgi apparatus	9.82E-04
23	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.32E-03
24	GO:0005737: cytoplasm	1.87E-03
25	GO:0005783: endoplasmic reticulum	2.00E-03
26	GO:0005851: eukaryotic translation initiation factor 2B complex	2.24E-03
27	GO:0031428: box C/D snoRNP complex	2.24E-03
28	GO:0031597: cytosolic proteasome complex	2.69E-03
29	GO:0005743: mitochondrial inner membrane	2.79E-03
30	GO:0009986: cell surface	3.16E-03
31	GO:0031595: nuclear proteasome complex	3.16E-03
32	GO:0009707: chloroplast outer membrane	3.82E-03
33	GO:0009514: glyoxysome	4.20E-03
34	GO:0005742: mitochondrial outer membrane translocase complex	4.20E-03
35	GO:0008180: COP9 signalosome	4.75E-03
36	GO:0015030: Cajal body	5.32E-03
37	GO:0008540: proteasome regulatory particle, base subcomplex	5.32E-03
38	GO:0017119: Golgi transport complex	5.93E-03
39	GO:0009507: chloroplast	6.47E-03
40	GO:0032040: small-subunit processome	7.20E-03
41	GO:0005750: mitochondrial respiratory chain complex III	8.56E-03
42	GO:0009536: plastid	8.99E-03
43	GO:0005635: nuclear envelope	9.00E-03
44	GO:0005777: peroxisome	9.17E-03
45	GO:0005834: heterotrimeric G-protein complex	1.06E-02
46	GO:0009570: chloroplast stroma	1.13E-02
47	GO:0070469: respiratory chain	1.15E-02
48	GO:0005802: trans-Golgi network	1.52E-02
49	GO:0005768: endosome	1.84E-02
50	GO:0016592: mediator complex	2.13E-02
51	GO:0071944: cell periphery	2.23E-02
52	GO:0030529: intracellular ribonucleoprotein complex	2.64E-02
53	GO:0015934: large ribosomal subunit	3.54E-02
54	GO:0000325: plant-type vacuole	3.54E-02
55	GO:0090406: pollen tube	4.52E-02