GO Enrichment Analysis of Co-expressed Genes with
AT1G54500
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006907: pinocytosis | 0.00E+00 |
| 2 | GO:0009249: protein lipoylation | 0.00E+00 |
| 3 | GO:0006982: response to lipid hydroperoxide | 0.00E+00 |
| 4 | GO:0010335: response to non-ionic osmotic stress | 0.00E+00 |
| 5 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
| 6 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 7 | GO:0009106: lipoate metabolic process | 0.00E+00 |
| 8 | GO:0018316: peptide cross-linking via L-cystine | 0.00E+00 |
| 9 | GO:0009658: chloroplast organization | 2.17E-07 |
| 10 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 2.37E-06 |
| 11 | GO:0048564: photosystem I assembly | 3.84E-06 |
| 12 | GO:0009098: leucine biosynthetic process | 1.06E-05 |
| 13 | GO:0090307: mitotic spindle assembly | 1.97E-05 |
| 14 | GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center | 1.97E-05 |
| 15 | GO:0016123: xanthophyll biosynthetic process | 5.76E-05 |
| 16 | GO:0071806: protein transmembrane transport | 2.25E-04 |
| 17 | GO:0034971: histone H3-R17 methylation | 2.25E-04 |
| 18 | GO:0042371: vitamin K biosynthetic process | 2.25E-04 |
| 19 | GO:0071454: cellular response to anoxia | 2.25E-04 |
| 20 | GO:0034080: CENP-A containing nucleosome assembly | 2.25E-04 |
| 21 | GO:0034970: histone H3-R2 methylation | 2.25E-04 |
| 22 | GO:0034972: histone H3-R26 methylation | 2.25E-04 |
| 23 | GO:0051418: microtubule nucleation by microtubule organizing center | 2.25E-04 |
| 24 | GO:0032544: plastid translation | 2.44E-04 |
| 25 | GO:0080183: response to photooxidative stress | 5.00E-04 |
| 26 | GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 5.00E-04 |
| 27 | GO:0080153: negative regulation of reductive pentose-phosphate cycle | 5.00E-04 |
| 28 | GO:0033566: gamma-tubulin complex localization | 5.00E-04 |
| 29 | GO:0042819: vitamin B6 biosynthetic process | 5.00E-04 |
| 30 | GO:0060359: response to ammonium ion | 5.00E-04 |
| 31 | GO:2000030: regulation of response to red or far red light | 5.00E-04 |
| 32 | GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation | 5.00E-04 |
| 33 | GO:0045037: protein import into chloroplast stroma | 5.45E-04 |
| 34 | GO:0009767: photosynthetic electron transport chain | 6.19E-04 |
| 35 | GO:0019253: reductive pentose-phosphate cycle | 6.96E-04 |
| 36 | GO:0043157: response to cation stress | 8.13E-04 |
| 37 | GO:0007052: mitotic spindle organization | 8.13E-04 |
| 38 | GO:0009150: purine ribonucleotide metabolic process | 8.13E-04 |
| 39 | GO:0009744: response to sucrose | 9.59E-04 |
| 40 | GO:0034508: centromere complex assembly | 1.16E-03 |
| 41 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.16E-03 |
| 42 | GO:0009067: aspartate family amino acid biosynthetic process | 1.16E-03 |
| 43 | GO:0042823: pyridoxal phosphate biosynthetic process | 1.16E-03 |
| 44 | GO:0033014: tetrapyrrole biosynthetic process | 1.16E-03 |
| 45 | GO:0008615: pyridoxine biosynthetic process | 1.16E-03 |
| 46 | GO:0042538: hyperosmotic salinity response | 1.27E-03 |
| 47 | GO:0042274: ribosomal small subunit biogenesis | 1.54E-03 |
| 48 | GO:0015994: chlorophyll metabolic process | 1.54E-03 |
| 49 | GO:0031122: cytoplasmic microtubule organization | 1.54E-03 |
| 50 | GO:0008033: tRNA processing | 1.73E-03 |
| 51 | GO:0009958: positive gravitropism | 1.87E-03 |
| 52 | GO:0000278: mitotic cell cycle | 1.97E-03 |
| 53 | GO:0035434: copper ion transmembrane transport | 1.97E-03 |
| 54 | GO:0009107: lipoate biosynthetic process | 1.97E-03 |
| 55 | GO:0016120: carotene biosynthetic process | 1.97E-03 |
| 56 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.97E-03 |
| 57 | GO:0050665: hydrogen peroxide biosynthetic process | 2.43E-03 |
| 58 | GO:0009959: negative gravitropism | 2.43E-03 |
| 59 | GO:0010190: cytochrome b6f complex assembly | 2.43E-03 |
| 60 | GO:0009643: photosynthetic acclimation | 2.43E-03 |
| 61 | GO:0019761: glucosinolate biosynthetic process | 2.45E-03 |
| 62 | GO:0009854: oxidative photosynthetic carbon pathway | 2.91E-03 |
| 63 | GO:0009088: threonine biosynthetic process | 2.91E-03 |
| 64 | GO:0010019: chloroplast-nucleus signaling pathway | 2.91E-03 |
| 65 | GO:0015977: carbon fixation | 2.91E-03 |
| 66 | GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity | 2.91E-03 |
| 67 | GO:0017148: negative regulation of translation | 2.91E-03 |
| 68 | GO:0016126: sterol biosynthetic process | 3.31E-03 |
| 69 | GO:0006401: RNA catabolic process | 3.43E-03 |
| 70 | GO:0009772: photosynthetic electron transport in photosystem II | 3.43E-03 |
| 71 | GO:1900056: negative regulation of leaf senescence | 3.43E-03 |
| 72 | GO:0015995: chlorophyll biosynthetic process | 3.89E-03 |
| 73 | GO:0010928: regulation of auxin mediated signaling pathway | 3.98E-03 |
| 74 | GO:0042255: ribosome assembly | 3.98E-03 |
| 75 | GO:0006353: DNA-templated transcription, termination | 3.98E-03 |
| 76 | GO:0006402: mRNA catabolic process | 3.98E-03 |
| 77 | GO:0006605: protein targeting | 3.98E-03 |
| 78 | GO:0009704: de-etiolation | 3.98E-03 |
| 79 | GO:0022900: electron transport chain | 4.56E-03 |
| 80 | GO:0000373: Group II intron splicing | 5.16E-03 |
| 81 | GO:0006783: heme biosynthetic process | 5.16E-03 |
| 82 | GO:0006779: porphyrin-containing compound biosynthetic process | 5.79E-03 |
| 83 | GO:0010380: regulation of chlorophyll biosynthetic process | 5.79E-03 |
| 84 | GO:0031425: chloroplast RNA processing | 5.79E-03 |
| 85 | GO:0007346: regulation of mitotic cell cycle | 5.79E-03 |
| 86 | GO:0045036: protein targeting to chloroplast | 6.45E-03 |
| 87 | GO:0009773: photosynthetic electron transport in photosystem I | 7.13E-03 |
| 88 | GO:0009089: lysine biosynthetic process via diaminopimelate | 7.13E-03 |
| 89 | GO:0043085: positive regulation of catalytic activity | 7.13E-03 |
| 90 | GO:0009735: response to cytokinin | 7.82E-03 |
| 91 | GO:0006790: sulfur compound metabolic process | 7.84E-03 |
| 92 | GO:0009725: response to hormone | 8.57E-03 |
| 93 | GO:0009416: response to light stimulus | 8.96E-03 |
| 94 | GO:0034605: cellular response to heat | 9.33E-03 |
| 95 | GO:0010207: photosystem II assembly | 9.33E-03 |
| 96 | GO:0006364: rRNA processing | 9.50E-03 |
| 97 | GO:0010224: response to UV-B | 9.83E-03 |
| 98 | GO:0090351: seedling development | 1.01E-02 |
| 99 | GO:0042023: DNA endoreduplication | 1.09E-02 |
| 100 | GO:0006289: nucleotide-excision repair | 1.17E-02 |
| 101 | GO:0006825: copper ion transport | 1.26E-02 |
| 102 | GO:0007017: microtubule-based process | 1.26E-02 |
| 103 | GO:0080092: regulation of pollen tube growth | 1.43E-02 |
| 104 | GO:0016226: iron-sulfur cluster assembly | 1.43E-02 |
| 105 | GO:0070417: cellular response to cold | 1.71E-02 |
| 106 | GO:0000226: microtubule cytoskeleton organization | 1.81E-02 |
| 107 | GO:0010197: polar nucleus fusion | 1.91E-02 |
| 108 | GO:0006520: cellular amino acid metabolic process | 1.91E-02 |
| 109 | GO:0015986: ATP synthesis coupled proton transport | 2.01E-02 |
| 110 | GO:0009646: response to absence of light | 2.01E-02 |
| 111 | GO:0009791: post-embryonic development | 2.11E-02 |
| 112 | GO:0010193: response to ozone | 2.22E-02 |
| 113 | GO:0032502: developmental process | 2.32E-02 |
| 114 | GO:0009630: gravitropism | 2.32E-02 |
| 115 | GO:0007264: small GTPase mediated signal transduction | 2.32E-02 |
| 116 | GO:0030163: protein catabolic process | 2.43E-02 |
| 117 | GO:0010228: vegetative to reproductive phase transition of meristem | 2.46E-02 |
| 118 | GO:0010286: heat acclimation | 2.65E-02 |
| 119 | GO:0000910: cytokinesis | 2.77E-02 |
| 120 | GO:0010027: thylakoid membrane organization | 2.88E-02 |
| 121 | GO:0009816: defense response to bacterium, incompatible interaction | 3.00E-02 |
| 122 | GO:0042254: ribosome biogenesis | 3.70E-02 |
| 123 | GO:0010218: response to far red light | 3.73E-02 |
| 124 | GO:0006811: ion transport | 3.73E-02 |
| 125 | GO:0009407: toxin catabolic process | 3.73E-02 |
| 126 | GO:0007568: aging | 3.86E-02 |
| 127 | GO:0009910: negative regulation of flower development | 3.86E-02 |
| 128 | GO:0009409: response to cold | 4.01E-02 |
| 129 | GO:0009637: response to blue light | 4.12E-02 |
| 130 | GO:0009853: photorespiration | 4.12E-02 |
| 131 | GO:0006810: transport | 4.51E-02 |
| 132 | GO:0010114: response to red light | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015038: glutathione disulfide oxidoreductase activity | 0.00E+00 |
| 2 | GO:0047793: cycloeucalenol cycloisomerase activity | 0.00E+00 |
| 3 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 4 | GO:0033819: lipoyl(octanoyl) transferase activity | 0.00E+00 |
| 5 | GO:0003862: 3-isopropylmalate dehydrogenase activity | 2.37E-06 |
| 6 | GO:0004848: ureidoglycolate hydrolase activity | 8.63E-06 |
| 7 | GO:0043015: gamma-tubulin binding | 3.60E-05 |
| 8 | GO:0019899: enzyme binding | 1.54E-04 |
| 9 | GO:0030941: chloroplast targeting sequence binding | 2.25E-04 |
| 10 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 2.25E-04 |
| 11 | GO:0046906: tetrapyrrole binding | 2.25E-04 |
| 12 | GO:0004325: ferrochelatase activity | 2.25E-04 |
| 13 | GO:0017118: lipoyltransferase activity | 5.00E-04 |
| 14 | GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity | 5.00E-04 |
| 15 | GO:0016415: octanoyltransferase activity | 5.00E-04 |
| 16 | GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity | 5.00E-04 |
| 17 | GO:0035241: protein-arginine omega-N monomethyltransferase activity | 5.00E-04 |
| 18 | GO:0061575: cyclin-dependent protein serine/threonine kinase activator activity | 5.00E-04 |
| 19 | GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity | 5.00E-04 |
| 20 | GO:0008469: histone-arginine N-methyltransferase activity | 8.13E-04 |
| 21 | GO:0008430: selenium binding | 8.13E-04 |
| 22 | GO:0004180: carboxypeptidase activity | 8.13E-04 |
| 23 | GO:0032947: protein complex scaffold | 8.13E-04 |
| 24 | GO:0019003: GDP binding | 8.13E-04 |
| 25 | GO:0003861: 3-isopropylmalate dehydratase activity | 8.13E-04 |
| 26 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.06E-03 |
| 27 | GO:0047627: adenylylsulfatase activity | 1.16E-03 |
| 28 | GO:0043023: ribosomal large subunit binding | 1.16E-03 |
| 29 | GO:0016984: ribulose-bisphosphate carboxylase activity | 1.16E-03 |
| 30 | GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity | 1.16E-03 |
| 31 | GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity | 1.16E-03 |
| 32 | GO:0004072: aspartate kinase activity | 1.16E-03 |
| 33 | GO:0000254: C-4 methylsterol oxidase activity | 1.16E-03 |
| 34 | GO:0016851: magnesium chelatase activity | 1.16E-03 |
| 35 | GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity | 1.16E-03 |
| 36 | GO:0008891: glycolate oxidase activity | 1.54E-03 |
| 37 | GO:0016836: hydro-lyase activity | 1.54E-03 |
| 38 | GO:0051861: glycolipid binding | 1.54E-03 |
| 39 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.54E-03 |
| 40 | GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity | 1.54E-03 |
| 41 | GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | 1.54E-03 |
| 42 | GO:0008374: O-acyltransferase activity | 1.97E-03 |
| 43 | GO:0051011: microtubule minus-end binding | 1.97E-03 |
| 44 | GO:0048038: quinone binding | 2.30E-03 |
| 45 | GO:0019843: rRNA binding | 2.88E-03 |
| 46 | GO:0015631: tubulin binding | 2.91E-03 |
| 47 | GO:0016597: amino acid binding | 3.13E-03 |
| 48 | GO:0016491: oxidoreductase activity | 3.88E-03 |
| 49 | GO:0005375: copper ion transmembrane transporter activity | 4.56E-03 |
| 50 | GO:0071949: FAD binding | 5.16E-03 |
| 51 | GO:0042393: histone binding | 6.22E-03 |
| 52 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 7.13E-03 |
| 53 | GO:0051287: NAD binding | 8.53E-03 |
| 54 | GO:0031072: heat shock protein binding | 8.57E-03 |
| 55 | GO:0000175: 3'-5'-exoribonuclease activity | 8.57E-03 |
| 56 | GO:0003690: double-stranded DNA binding | 9.83E-03 |
| 57 | GO:0003887: DNA-directed DNA polymerase activity | 1.09E-02 |
| 58 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 1.16E-02 |
| 59 | GO:0051536: iron-sulfur cluster binding | 1.17E-02 |
| 60 | GO:0043130: ubiquitin binding | 1.17E-02 |
| 61 | GO:0003727: single-stranded RNA binding | 1.62E-02 |
| 62 | GO:0009055: electron carrier activity | 1.79E-02 |
| 63 | GO:0008080: N-acetyltransferase activity | 1.91E-02 |
| 64 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.91E-02 |
| 65 | GO:0010181: FMN binding | 2.01E-02 |
| 66 | GO:0008565: protein transporter activity | 2.04E-02 |
| 67 | GO:0019901: protein kinase binding | 2.11E-02 |
| 68 | GO:0004872: receptor activity | 2.11E-02 |
| 69 | GO:0004518: nuclease activity | 2.32E-02 |
| 70 | GO:0005200: structural constituent of cytoskeleton | 2.65E-02 |
| 71 | GO:0008236: serine-type peptidase activity | 3.36E-02 |
| 72 | GO:0046982: protein heterodimerization activity | 3.56E-02 |
| 73 | GO:0000287: magnesium ion binding | 3.56E-02 |
| 74 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 3.73E-02 |
| 75 | GO:0004222: metalloendopeptidase activity | 3.73E-02 |
| 76 | GO:0003746: translation elongation factor activity | 4.12E-02 |
| 77 | GO:0016740: transferase activity | 4.28E-02 |
| 78 | GO:0004364: glutathione transferase activity | 4.79E-02 |
| 79 | GO:0004185: serine-type carboxypeptidase activity | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0030427: site of polarized growth | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 4.53E-32 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 4.58E-22 |
| 4 | GO:0009570: chloroplast stroma | 1.91E-13 |
| 5 | GO:0009941: chloroplast envelope | 2.14E-08 |
| 6 | GO:0009579: thylakoid | 4.11E-07 |
| 7 | GO:0008274: gamma-tubulin ring complex | 2.37E-06 |
| 8 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 7.84E-06 |
| 9 | GO:0009536: plastid | 1.01E-05 |
| 10 | GO:0000923: equatorial microtubule organizing center | 1.97E-05 |
| 11 | GO:0009706: chloroplast inner membrane | 3.48E-05 |
| 12 | GO:0009534: chloroplast thylakoid | 1.88E-04 |
| 13 | GO:0031021: interphase microtubule organizing center | 2.25E-04 |
| 14 | GO:0080085: signal recognition particle, chloroplast targeting | 5.00E-04 |
| 15 | GO:0005640: nuclear outer membrane | 8.13E-04 |
| 16 | GO:0009528: plastid inner membrane | 8.13E-04 |
| 17 | GO:0009573: chloroplast ribulose bisphosphate carboxylase complex | 8.13E-04 |
| 18 | GO:0005828: kinetochore microtubule | 1.54E-03 |
| 19 | GO:0000930: gamma-tubulin complex | 1.54E-03 |
| 20 | GO:0030286: dynein complex | 1.54E-03 |
| 21 | GO:0055035: plastid thylakoid membrane | 1.97E-03 |
| 22 | GO:0072686: mitotic spindle | 1.97E-03 |
| 23 | GO:0000776: kinetochore | 1.97E-03 |
| 24 | GO:0031969: chloroplast membrane | 2.07E-03 |
| 25 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 2.43E-03 |
| 26 | GO:0009543: chloroplast thylakoid lumen | 2.88E-03 |
| 27 | GO:0009840: chloroplastic endopeptidase Clp complex | 2.91E-03 |
| 28 | GO:0010319: stromule | 2.95E-03 |
| 29 | GO:0005623: cell | 2.98E-03 |
| 30 | GO:0031359: integral component of chloroplast outer membrane | 3.43E-03 |
| 31 | GO:0009707: chloroplast outer membrane | 4.31E-03 |
| 32 | GO:0046930: pore complex | 4.56E-03 |
| 33 | GO:0000307: cyclin-dependent protein kinase holoenzyme complex | 4.56E-03 |
| 34 | GO:0009539: photosystem II reaction center | 4.56E-03 |
| 35 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 4.56E-03 |
| 36 | GO:0000922: spindle pole | 5.16E-03 |
| 37 | GO:0016324: apical plasma membrane | 6.45E-03 |
| 38 | GO:0009574: preprophase band | 8.57E-03 |
| 39 | GO:0030095: chloroplast photosystem II | 9.33E-03 |
| 40 | GO:0005875: microtubule associated complex | 1.09E-02 |
| 41 | GO:0043234: protein complex | 1.09E-02 |
| 42 | GO:0009654: photosystem II oxygen evolving complex | 1.26E-02 |
| 43 | GO:0042651: thylakoid membrane | 1.26E-02 |
| 44 | GO:0015935: small ribosomal subunit | 1.34E-02 |
| 45 | GO:0005773: vacuole | 2.31E-02 |
| 46 | GO:0005840: ribosome | 2.77E-02 |
| 47 | GO:0019005: SCF ubiquitin ligase complex | 3.48E-02 |
| 48 | GO:0005777: peroxisome | 3.97E-02 |
| 49 | GO:0005819: spindle | 4.39E-02 |