GO Enrichment Analysis of Co-expressed Genes with
AT1G54380
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008612: peptidyl-lysine modification to peptidyl-hypusine | 0.00E+00 |
| 2 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 3 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 4 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 5 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 6 | GO:0006364: rRNA processing | 2.94E-10 |
| 7 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.82E-08 |
| 8 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 8.72E-08 |
| 9 | GO:0000028: ribosomal small subunit assembly | 1.15E-05 |
| 10 | GO:0043985: histone H4-R3 methylation | 3.64E-05 |
| 11 | GO:0031120: snRNA pseudouridine synthesis | 3.64E-05 |
| 12 | GO:0031118: rRNA pseudouridine synthesis | 3.64E-05 |
| 13 | GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine | 3.64E-05 |
| 14 | GO:0009553: embryo sac development | 8.35E-05 |
| 15 | GO:0034470: ncRNA processing | 9.09E-05 |
| 16 | GO:0009220: pyrimidine ribonucleotide biosynthetic process | 9.09E-05 |
| 17 | GO:0007276: gamete generation | 2.33E-04 |
| 18 | GO:0042274: ribosomal small subunit biogenesis | 3.14E-04 |
| 19 | GO:0042273: ribosomal large subunit biogenesis | 3.14E-04 |
| 20 | GO:0000460: maturation of 5.8S rRNA | 3.14E-04 |
| 21 | GO:0044205: 'de novo' UMP biosynthetic process | 3.14E-04 |
| 22 | GO:0006479: protein methylation | 3.14E-04 |
| 23 | GO:0010375: stomatal complex patterning | 4.01E-04 |
| 24 | GO:0000470: maturation of LSU-rRNA | 4.92E-04 |
| 25 | GO:0000741: karyogamy | 4.92E-04 |
| 26 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 6.87E-04 |
| 27 | GO:0010374: stomatal complex development | 6.87E-04 |
| 28 | GO:0006913: nucleocytoplasmic transport | 1.36E-03 |
| 29 | GO:0010030: positive regulation of seed germination | 1.89E-03 |
| 30 | GO:0051302: regulation of cell division | 2.33E-03 |
| 31 | GO:0007005: mitochondrion organization | 2.64E-03 |
| 32 | GO:0009561: megagametogenesis | 2.96E-03 |
| 33 | GO:0042254: ribosome biogenesis | 3.19E-03 |
| 34 | GO:0010501: RNA secondary structure unwinding | 3.30E-03 |
| 35 | GO:0006520: cellular amino acid metabolic process | 3.47E-03 |
| 36 | GO:0010197: polar nucleus fusion | 3.47E-03 |
| 37 | GO:0032259: methylation | 5.45E-03 |
| 38 | GO:0016049: cell growth | 5.97E-03 |
| 39 | GO:0048527: lateral root development | 6.83E-03 |
| 40 | GO:0006412: translation | 7.45E-03 |
| 41 | GO:0016569: covalent chromatin modification | 1.32E-02 |
| 42 | GO:0006396: RNA processing | 1.40E-02 |
| 43 | GO:0009651: response to salt stress | 1.68E-02 |
| 44 | GO:0009790: embryo development | 1.80E-02 |
| 45 | GO:0016036: cellular response to phosphate starvation | 1.92E-02 |
| 46 | GO:0009451: RNA modification | 2.06E-02 |
| 47 | GO:0007166: cell surface receptor signaling pathway | 2.23E-02 |
| 48 | GO:0009723: response to ethylene | 3.06E-02 |
| 49 | GO:0045892: negative regulation of transcription, DNA-templated | 3.70E-02 |
| 50 | GO:0006886: intracellular protein transport | 3.74E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004164: diphthine synthase activity | 0.00E+00 |
| 2 | GO:0034038: deoxyhypusine synthase activity | 0.00E+00 |
| 3 | GO:0004070: aspartate carbamoyltransferase activity | 0.00E+00 |
| 4 | GO:0003963: RNA-3'-phosphate cyclase activity | 0.00E+00 |
| 5 | GO:0000166: nucleotide binding | 3.32E-08 |
| 6 | GO:0043021: ribonucleoprotein complex binding | 8.72E-08 |
| 7 | GO:0070181: small ribosomal subunit rRNA binding | 3.39E-07 |
| 8 | GO:0003723: RNA binding | 4.59E-06 |
| 9 | GO:0030515: snoRNA binding | 8.60E-06 |
| 10 | GO:0042134: rRNA primary transcript binding | 3.64E-05 |
| 11 | GO:0016743: carboxyl- or carbamoyltransferase activity | 9.09E-05 |
| 12 | GO:0048027: mRNA 5'-UTR binding | 2.33E-04 |
| 13 | GO:0008168: methyltransferase activity | 3.26E-04 |
| 14 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 8.60E-04 |
| 15 | GO:0001055: RNA polymerase II activity | 1.12E-03 |
| 16 | GO:0003676: nucleic acid binding | 1.19E-03 |
| 17 | GO:0001054: RNA polymerase I activity | 1.36E-03 |
| 18 | GO:0001056: RNA polymerase III activity | 1.49E-03 |
| 19 | GO:0009982: pseudouridine synthase activity | 1.62E-03 |
| 20 | GO:0003735: structural constituent of ribosome | 1.73E-03 |
| 21 | GO:0004407: histone deacetylase activity | 2.18E-03 |
| 22 | GO:0004527: exonuclease activity | 3.47E-03 |
| 23 | GO:0016597: amino acid binding | 4.95E-03 |
| 24 | GO:0004004: ATP-dependent RNA helicase activity | 5.76E-03 |
| 25 | GO:0003746: translation elongation factor activity | 7.28E-03 |
| 26 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 7.51E-03 |
| 27 | GO:0051082: unfolded protein binding | 1.37E-02 |
| 28 | GO:0008026: ATP-dependent helicase activity | 1.43E-02 |
| 29 | GO:0019843: rRNA binding | 1.61E-02 |
| 30 | GO:0046983: protein dimerization activity | 2.74E-02 |
| 31 | GO:0005515: protein binding | 2.93E-02 |
| 32 | GO:0003729: mRNA binding | 3.06E-02 |
| 33 | GO:0003924: GTPase activity | 4.25E-02 |
| 34 | GO:0016787: hydrolase activity | 4.38E-02 |
| 35 | GO:0004519: endonuclease activity | 4.51E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0005730: nucleolus | 9.24E-23 |
| 3 | GO:0032040: small-subunit processome | 1.45E-09 |
| 4 | GO:0030687: preribosome, large subunit precursor | 3.01E-08 |
| 5 | GO:0070545: PeBoW complex | 8.72E-08 |
| 6 | GO:0005763: mitochondrial small ribosomal subunit | 1.88E-05 |
| 7 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.79E-05 |
| 8 | GO:0034388: Pwp2p-containing subcomplex of 90S preribosome | 3.64E-05 |
| 9 | GO:0005834: heterotrimeric G-protein complex | 7.27E-05 |
| 10 | GO:0030130: clathrin coat of trans-Golgi network vesicle | 1.58E-04 |
| 11 | GO:0030132: clathrin coat of coated pit | 1.58E-04 |
| 12 | GO:0005634: nucleus | 2.24E-04 |
| 13 | GO:0031429: box H/ACA snoRNP complex | 2.33E-04 |
| 14 | GO:0016363: nuclear matrix | 5.88E-04 |
| 15 | GO:0034399: nuclear periphery | 7.90E-04 |
| 16 | GO:0005736: DNA-directed RNA polymerase I complex | 1.01E-03 |
| 17 | GO:0005666: DNA-directed RNA polymerase III complex | 1.12E-03 |
| 18 | GO:0015030: Cajal body | 1.12E-03 |
| 19 | GO:0000418: DNA-directed RNA polymerase IV complex | 1.24E-03 |
| 20 | GO:0005654: nucleoplasm | 1.45E-03 |
| 21 | GO:0005665: DNA-directed RNA polymerase II, core complex | 1.49E-03 |
| 22 | GO:0019013: viral nucleocapsid | 1.62E-03 |
| 23 | GO:0000419: DNA-directed RNA polymerase V complex | 2.04E-03 |
| 24 | GO:0015935: small ribosomal subunit | 2.48E-03 |
| 25 | GO:0030529: intracellular ribonucleoprotein complex | 5.15E-03 |
| 26 | GO:0005829: cytosol | 6.79E-03 |
| 27 | GO:0015934: large ribosomal subunit | 6.83E-03 |
| 28 | GO:0005747: mitochondrial respiratory chain complex I | 1.23E-02 |
| 29 | GO:0005732: small nucleolar ribonucleoprotein complex | 1.46E-02 |
| 30 | GO:0005622: intracellular | 1.80E-02 |
| 31 | GO:0005759: mitochondrial matrix | 1.89E-02 |
| 32 | GO:0005618: cell wall | 2.08E-02 |
| 33 | GO:0005840: ribosome | 2.15E-02 |
| 34 | GO:0022627: cytosolic small ribosomal subunit | 2.47E-02 |
| 35 | GO:0005773: vacuole | 2.99E-02 |
| 36 | GO:0022625: cytosolic large ribosomal subunit | 3.34E-02 |
| 37 | GO:0005743: mitochondrial inner membrane | 4.03E-02 |