co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G54350

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
2	GO:0042821: pyridoxal biosynthetic process	0.00E+00
3	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
4	GO:0006114: glycerol biosynthetic process	0.00E+00
5	GO:0000372: Group I intron splicing	0.00E+00
6	GO:0042820: vitamin B6 catabolic process	0.00E+00
7	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
8	GO:0008298: intracellular mRNA localization	0.00E+00
9	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
10	GO:0006399: tRNA metabolic process	0.00E+00
11	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
12	GO:0070125: mitochondrial translational elongation	0.00E+00
13	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
14	GO:0019685: photosynthesis, dark reaction	0.00E+00
15	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
16	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
17	GO:0098586: cellular response to virus	0.00E+00
18	GO:0015979: photosynthesis	7.93E-07
19	GO:0018298: protein-chromophore linkage	1.90E-06
20	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.32E-06
21	GO:0009793: embryo development ending in seed dormancy	3.91E-06
22	GO:0071482: cellular response to light stimulus	5.45E-06
23	GO:2001141: regulation of RNA biosynthetic process	1.93E-05
24	GO:0010207: photosystem II assembly	3.39E-05
25	GO:0006021: inositol biosynthetic process	3.53E-05
26	GO:0009902: chloroplast relocation	3.53E-05
27	GO:0009765: photosynthesis, light harvesting	3.53E-05
28	GO:0046855: inositol phosphate dephosphorylation	8.30E-05
29	GO:0009643: photosynthetic acclimation	8.30E-05
30	GO:0042372: phylloquinone biosynthetic process	1.15E-04
31	GO:0048564: photosystem I assembly	1.94E-04
32	GO:0019646: aerobic electron transport chain	2.22E-04
33	GO:0009443: pyridoxal 5'-phosphate salvage	2.22E-04
34	GO:0071277: cellular response to calcium ion	2.22E-04
35	GO:0031426: polycistronic mRNA processing	2.22E-04
36	GO:0000481: maturation of 5S rRNA	2.22E-04
37	GO:0042371: vitamin K biosynthetic process	2.22E-04
38	GO:0006436: tryptophanyl-tRNA aminoacylation	2.22E-04
39	GO:0034337: RNA folding	2.22E-04
40	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.22E-04
41	GO:0006419: alanyl-tRNA aminoacylation	2.22E-04
42	GO:0010362: negative regulation of anion channel activity by blue light	2.22E-04
43	GO:0009657: plastid organization	2.40E-04
44	GO:0015995: chlorophyll biosynthetic process	4.46E-04
45	GO:0006352: DNA-templated transcription, initiation	4.69E-04
46	GO:0042548: regulation of photosynthesis, light reaction	4.95E-04
47	GO:0080005: photosystem stoichiometry adjustment	4.95E-04
48	GO:0034755: iron ion transmembrane transport	4.95E-04
49	GO:0006435: threonyl-tRNA aminoacylation	4.95E-04
50	GO:0030187: melatonin biosynthetic process	4.95E-04
51	GO:0006432: phenylalanyl-tRNA aminoacylation	4.95E-04
52	GO:0000256: allantoin catabolic process	4.95E-04
53	GO:0046741: transport of virus in host, tissue to tissue	4.95E-04
54	GO:0006790: sulfur compound metabolic process	5.37E-04
55	GO:0009767: photosynthetic electron transport chain	6.09E-04
56	GO:0010020: chloroplast fission	6.86E-04
57	GO:0007623: circadian rhythm	7.59E-04
58	GO:0046854: phosphatidylinositol phosphorylation	7.67E-04
59	GO:0009405: pathogenesis	8.05E-04
60	GO:0006013: mannose metabolic process	8.05E-04
61	GO:0002230: positive regulation of defense response to virus by host	8.05E-04
62	GO:1901672: positive regulation of systemic acquired resistance	8.05E-04
63	GO:0010136: ureide catabolic process	8.05E-04
64	GO:0005977: glycogen metabolic process	8.05E-04
65	GO:0006145: purine nucleobase catabolic process	1.15E-03
66	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.15E-03
67	GO:0046739: transport of virus in multicellular host	1.15E-03
68	GO:0043572: plastid fission	1.15E-03
69	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.15E-03
70	GO:0006020: inositol metabolic process	1.15E-03
71	GO:0010239: chloroplast mRNA processing	1.15E-03
72	GO:0009658: chloroplast organization	1.46E-03
73	GO:0006546: glycine catabolic process	1.53E-03
74	GO:0010021: amylopectin biosynthetic process	1.53E-03
75	GO:0031935: regulation of chromatin silencing	1.53E-03
76	GO:0016117: carotenoid biosynthetic process	1.58E-03
77	GO:0034052: positive regulation of plant-type hypersensitive response	1.95E-03
78	GO:0016120: carotene biosynthetic process	1.95E-03
79	GO:0016558: protein import into peroxisome matrix	1.95E-03
80	GO:0010236: plastoquinone biosynthetic process	1.95E-03
81	GO:0006282: regulation of DNA repair	1.95E-03
82	GO:0016123: xanthophyll biosynthetic process	1.95E-03
83	GO:0006655: phosphatidylglycerol biosynthetic process	2.40E-03
84	GO:0042549: photosystem II stabilization	2.40E-03
85	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.40E-03
86	GO:0010189: vitamin E biosynthetic process	2.89E-03
87	GO:0009645: response to low light intensity stimulus	3.40E-03
88	GO:0006400: tRNA modification	3.40E-03
89	GO:0009772: photosynthetic electron transport in photosystem II	3.40E-03
90	GO:0006413: translational initiation	3.90E-03
91	GO:0009642: response to light intensity	3.94E-03
92	GO:0009704: de-etiolation	3.94E-03
93	GO:0032508: DNA duplex unwinding	3.94E-03
94	GO:0016559: peroxisome fission	3.94E-03
95	GO:0017004: cytochrome complex assembly	4.51E-03
96	GO:0007568: aging	4.91E-03
97	GO:0006098: pentose-phosphate shunt	5.11E-03
98	GO:0009821: alkaloid biosynthetic process	5.11E-03
99	GO:0048507: meristem development	5.11E-03
100	GO:0090333: regulation of stomatal closure	5.11E-03
101	GO:0000373: Group II intron splicing	5.11E-03
102	GO:0009637: response to blue light	5.38E-03
103	GO:1900426: positive regulation of defense response to bacterium	5.74E-03
104	GO:0009638: phototropism	5.74E-03
105	GO:0006259: DNA metabolic process	6.38E-03
106	GO:0010114: response to red light	6.93E-03
107	GO:0006265: DNA topological change	7.06E-03
108	GO:0006415: translational termination	7.06E-03
109	GO:0009073: aromatic amino acid family biosynthetic process	7.06E-03
110	GO:0006879: cellular iron ion homeostasis	7.06E-03
111	GO:0009644: response to high light intensity	7.50E-03
112	GO:0016024: CDP-diacylglycerol biosynthetic process	7.76E-03
113	GO:0006006: glucose metabolic process	8.48E-03
114	GO:0006094: gluconeogenesis	8.48E-03
115	GO:0055114: oxidation-reduction process	8.66E-03
116	GO:0019253: reductive pentose-phosphate cycle	9.23E-03
117	GO:0006364: rRNA processing	9.36E-03
118	GO:0035556: intracellular signal transduction	9.51E-03
119	GO:0019853: L-ascorbic acid biosynthetic process	1.00E-02
120	GO:0006096: glycolytic process	1.11E-02
121	GO:0080147: root hair cell development	1.16E-02
122	GO:0006418: tRNA aminoacylation for protein translation	1.24E-02
123	GO:0007017: microtubule-based process	1.24E-02
124	GO:0009768: photosynthesis, light harvesting in photosystem I	1.24E-02
125	GO:0006825: copper ion transport	1.24E-02
126	GO:0051302: regulation of cell division	1.24E-02
127	GO:0008299: isoprenoid biosynthetic process	1.24E-02
128	GO:0006396: RNA processing	1.38E-02
129	GO:0046686: response to cadmium ion	1.64E-02
130	GO:0010118: stomatal movement	1.79E-02
131	GO:0048868: pollen tube development	1.89E-02
132	GO:0007059: chromosome segregation	1.99E-02
133	GO:0009791: post-embryonic development	2.09E-02
134	GO:0019252: starch biosynthetic process	2.09E-02
135	GO:0008654: phospholipid biosynthetic process	2.09E-02
136	GO:0002229: defense response to oomycetes	2.19E-02
137	GO:0010193: response to ozone	2.19E-02
138	GO:0000302: response to reactive oxygen species	2.19E-02
139	GO:0006635: fatty acid beta-oxidation	2.19E-02
140	GO:0031047: gene silencing by RNA	2.30E-02
141	GO:0016032: viral process	2.30E-02
142	GO:0051607: defense response to virus	2.74E-02
143	GO:0010468: regulation of gene expression	2.76E-02
144	GO:0001666: response to hypoxia	2.85E-02
145	GO:0010027: thylakoid membrane organization	2.85E-02
146	GO:0009816: defense response to bacterium, incompatible interaction	2.97E-02
147	GO:0042128: nitrate assimilation	3.09E-02
148	GO:0016311: dephosphorylation	3.32E-02
149	GO:0009817: defense response to fungus, incompatible interaction	3.45E-02
150	GO:0048481: plant ovule development	3.45E-02
151	GO:0000160: phosphorelay signal transduction system	3.57E-02
152	GO:0042254: ribosome biogenesis	3.65E-02
153	GO:0009853: photorespiration	4.08E-02
154	GO:0055085: transmembrane transport	4.41E-02
155	GO:0080167: response to karrikin	4.42E-02
156	GO:0006457: protein folding	4.52E-02
157	GO:0046777: protein autophosphorylation	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
2	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
3	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
4	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
5	GO:0042623: ATPase activity, coupled	0.00E+00
6	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
7	GO:0010276: phytol kinase activity	0.00E+00
8	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
9	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
10	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
11	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
12	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
13	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
14	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
15	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
16	GO:0008934: inositol monophosphate 1-phosphatase activity	2.32E-06
17	GO:0052833: inositol monophosphate 4-phosphatase activity	2.32E-06
18	GO:0052832: inositol monophosphate 3-phosphatase activity	2.32E-06
19	GO:0070402: NADPH binding	8.46E-06
20	GO:0016168: chlorophyll binding	2.78E-05
21	GO:0043495: protein anchor	3.53E-05
22	GO:0001053: plastid sigma factor activity	3.53E-05
23	GO:0016987: sigma factor activity	3.53E-05
24	GO:0005528: FK506 binding	5.75E-05
25	GO:0022891: substrate-specific transmembrane transporter activity	1.02E-04
26	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.15E-04
27	GO:0019899: enzyme binding	1.52E-04
28	GO:0004813: alanine-tRNA ligase activity	2.22E-04
29	GO:0004008: copper-exporting ATPase activity	2.22E-04
30	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.22E-04
31	GO:0004830: tryptophan-tRNA ligase activity	2.22E-04
32	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.22E-04
33	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.22E-04
34	GO:0004826: phenylalanine-tRNA ligase activity	4.95E-04
35	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.95E-04
36	GO:0004829: threonine-tRNA ligase activity	4.95E-04
37	GO:0019156: isoamylase activity	4.95E-04
38	GO:0019200: carbohydrate kinase activity	4.95E-04
39	GO:0004047: aminomethyltransferase activity	4.95E-04
40	GO:0000049: tRNA binding	5.37E-04
41	GO:0004148: dihydrolipoyl dehydrogenase activity	8.05E-04
42	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	8.05E-04
43	GO:0004751: ribose-5-phosphate isomerase activity	8.05E-04
44	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	8.05E-04
45	GO:0042802: identical protein binding	1.09E-03
46	GO:0004176: ATP-dependent peptidase activity	1.13E-03
47	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.14E-03
48	GO:0048027: mRNA 5'-UTR binding	1.15E-03
49	GO:0016851: magnesium chelatase activity	1.15E-03
50	GO:0004792: thiosulfate sulfurtransferase activity	1.15E-03
51	GO:0016149: translation release factor activity, codon specific	1.15E-03
52	GO:0009882: blue light photoreceptor activity	1.15E-03
53	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.53E-03
54	GO:0004659: prenyltransferase activity	1.53E-03
55	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.53E-03
56	GO:0008453: alanine-glyoxylate transaminase activity	1.53E-03
57	GO:0008080: N-acetyltransferase activity	1.84E-03
58	GO:0010181: FMN binding	1.97E-03
59	GO:0004556: alpha-amylase activity	2.40E-03
60	GO:0004605: phosphatidate cytidylyltransferase activity	2.40E-03
61	GO:0004332: fructose-bisphosphate aldolase activity	2.40E-03
62	GO:0004559: alpha-mannosidase activity	2.89E-03
63	GO:0016491: oxidoreductase activity	3.76E-03
64	GO:0004033: aldo-keto reductase (NADP) activity	3.94E-03
65	GO:0043022: ribosome binding	3.94E-03
66	GO:0005375: copper ion transmembrane transporter activity	4.51E-03
67	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	4.51E-03
68	GO:0003747: translation release factor activity	5.11E-03
69	GO:0005381: iron ion transmembrane transporter activity	5.74E-03
70	GO:0016844: strictosidine synthase activity	5.74E-03
71	GO:0005089: Rho guanyl-nucleotide exchange factor activity	7.06E-03
72	GO:0016887: ATPase activity	7.13E-03
73	GO:0051537: 2 iron, 2 sulfur cluster binding	7.50E-03
74	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	8.48E-03
75	GO:0031072: heat shock protein binding	8.48E-03
76	GO:0000155: phosphorelay sensor kinase activity	8.48E-03
77	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	9.36E-03
78	GO:0031409: pigment binding	1.08E-02
79	GO:0003954: NADH dehydrogenase activity	1.16E-02
80	GO:0003727: single-stranded RNA binding	1.60E-02
81	GO:0004812: aminoacyl-tRNA ligase activity	1.70E-02
82	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.72E-02
83	GO:0009055: electron carrier activity	1.75E-02
84	GO:0016853: isomerase activity	1.99E-02
85	GO:0048038: quinone binding	2.19E-02
86	GO:0008483: transaminase activity	2.63E-02
87	GO:0008237: metallopeptidase activity	2.63E-02
88	GO:0003743: translation initiation factor activity	2.70E-02
89	GO:0016597: amino acid binding	2.74E-02
90	GO:0008236: serine-type peptidase activity	3.32E-02
91	GO:0004222: metalloendopeptidase activity	3.70E-02
92	GO:0050897: cobalt ion binding	3.82E-02
93	GO:0030145: manganese ion binding	3.82E-02
94	GO:0003746: translation elongation factor activity	4.08E-02
95	GO:0050661: NADP binding	4.47E-02
96	GO:0003723: RNA binding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	2.85E-59
3	GO:0009535: chloroplast thylakoid membrane	3.76E-22
4	GO:0009570: chloroplast stroma	1.82E-15
5	GO:0009941: chloroplast envelope	4.99E-15
6	GO:0009543: chloroplast thylakoid lumen	1.20E-11
7	GO:0009534: chloroplast thylakoid	2.82E-09
8	GO:0031969: chloroplast membrane	2.97E-08
9	GO:0031977: thylakoid lumen	2.17E-07
10	GO:0009523: photosystem II	9.99E-06
11	GO:0009579: thylakoid	2.99E-05
12	GO:0009707: chloroplast outer membrane	4.24E-05
13	GO:0042651: thylakoid membrane	6.72E-05
14	GO:0009782: photosystem I antenna complex	2.22E-04
15	GO:0031304: intrinsic component of mitochondrial inner membrane	4.95E-04
16	GO:0030095: chloroplast photosystem II	6.86E-04
17	GO:0010007: magnesium chelatase complex	8.05E-04
18	GO:0009654: photosystem II oxygen evolving complex	1.03E-03
19	GO:0030286: dynein complex	1.53E-03
20	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.53E-03
21	GO:0019898: extrinsic component of membrane	2.12E-03
22	GO:0010287: plastoglobule	2.64E-03
23	GO:0009295: nucleoid	2.91E-03
24	GO:0005759: mitochondrial matrix	3.78E-03
25	GO:0042644: chloroplast nucleoid	5.11E-03
26	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.11E-03
27	GO:0032040: small-subunit processome	7.76E-03
28	GO:0009508: plastid chromosome	8.48E-03
29	GO:0030076: light-harvesting complex	1.00E-02
30	GO:0009532: plastid stroma	1.33E-02
31	GO:0005778: peroxisomal membrane	2.63E-02
32	GO:0030529: intracellular ribonucleoprotein complex	2.85E-02
33	GO:0009536: plastid	3.40E-02
34	GO:0005739: mitochondrion	4.37E-02