co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G53880

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030149: sphingolipid catabolic process	0.00E+00
2	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
3	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
4	GO:0010398: xylogalacturonan metabolic process	0.00E+00
5	GO:0044843: cell cycle G1/S phase transition	0.00E+00
6	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
7	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
8	GO:0007160: cell-matrix adhesion	0.00E+00
9	GO:0006412: translation	3.91E-09
10	GO:0009735: response to cytokinin	5.66E-09
11	GO:0034976: response to endoplasmic reticulum stress	7.52E-08
12	GO:0046686: response to cadmium ion	9.80E-08
13	GO:0030150: protein import into mitochondrial matrix	7.86E-06
14	GO:0018279: protein N-linked glycosylation via asparagine	1.28E-05
15	GO:0009651: response to salt stress	2.30E-05
16	GO:0006407: rRNA export from nucleus	9.14E-05
17	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	9.14E-05
18	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	9.14E-05
19	GO:0006626: protein targeting to mitochondrion	1.77E-04
20	GO:0015786: UDP-glucose transport	2.16E-04
21	GO:0019752: carboxylic acid metabolic process	2.16E-04
22	GO:0006487: protein N-linked glycosylation	2.85E-04
23	GO:0006096: glycolytic process	3.60E-04
24	GO:0055074: calcium ion homeostasis	3.61E-04
25	GO:0015783: GDP-fucose transport	3.61E-04
26	GO:0042256: mature ribosome assembly	3.61E-04
27	GO:0045039: protein import into mitochondrial inner membrane	3.61E-04
28	GO:0006457: protein folding	3.90E-04
29	GO:0045454: cell redox homeostasis	4.09E-04
30	GO:0032981: mitochondrial respiratory chain complex I assembly	5.20E-04
31	GO:0001676: long-chain fatty acid metabolic process	5.20E-04
32	GO:0033617: mitochondrial respiratory chain complex IV assembly	5.20E-04
33	GO:0072334: UDP-galactose transmembrane transport	5.20E-04
34	GO:0010483: pollen tube reception	6.90E-04
35	GO:0042274: ribosomal small subunit biogenesis	6.90E-04
36	GO:0051205: protein insertion into membrane	6.90E-04
37	GO:0036065: fucosylation	8.73E-04
38	GO:0006461: protein complex assembly	8.73E-04
39	GO:1902183: regulation of shoot apical meristem development	8.73E-04
40	GO:0045116: protein neddylation	8.73E-04
41	GO:0009612: response to mechanical stimulus	1.27E-03
42	GO:0006458: 'de novo' protein folding	1.27E-03
43	GO:1901001: negative regulation of response to salt stress	1.27E-03
44	GO:0010043: response to zinc ion	1.46E-03
45	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	1.49E-03
46	GO:0000028: ribosomal small subunit assembly	1.72E-03
47	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.72E-03
48	GO:0001558: regulation of cell growth	1.96E-03
49	GO:0010208: pollen wall assembly	1.96E-03
50	GO:0009060: aerobic respiration	2.21E-03
51	GO:0015780: nucleotide-sugar transport	2.21E-03
52	GO:0006098: pentose-phosphate shunt	2.21E-03
53	GO:0010205: photoinhibition	2.48E-03
54	GO:0043067: regulation of programmed cell death	2.48E-03
55	GO:0006364: rRNA processing	2.75E-03
56	GO:0072593: reactive oxygen species metabolic process	3.03E-03
57	GO:0016485: protein processing	3.03E-03
58	GO:0015770: sucrose transport	3.03E-03
59	GO:0006820: anion transport	3.32E-03
60	GO:0006094: gluconeogenesis	3.63E-03
61	GO:0009793: embryo development ending in seed dormancy	3.73E-03
62	GO:0006979: response to oxidative stress	3.93E-03
63	GO:0002237: response to molecule of bacterial origin	3.93E-03
64	GO:0090351: seedling development	4.26E-03
65	GO:0009969: xyloglucan biosynthetic process	4.26E-03
66	GO:0006289: nucleotide-excision repair	4.92E-03
67	GO:0051302: regulation of cell division	5.27E-03
68	GO:0042744: hydrogen peroxide catabolic process	5.53E-03
69	GO:0051260: protein homooligomerization	5.62E-03
70	GO:0010431: seed maturation	5.62E-03
71	GO:0061077: chaperone-mediated protein folding	5.62E-03
72	GO:0030245: cellulose catabolic process	5.98E-03
73	GO:0006413: translational initiation	6.24E-03
74	GO:0040007: growth	6.35E-03
75	GO:0010584: pollen exine formation	6.73E-03
76	GO:0042147: retrograde transport, endosome to Golgi	7.11E-03
77	GO:0008033: tRNA processing	7.51E-03
78	GO:0006520: cellular amino acid metabolic process	7.91E-03
79	GO:0048868: pollen tube development	7.91E-03
80	GO:0045489: pectin biosynthetic process	7.91E-03
81	GO:0009749: response to glucose	8.74E-03
82	GO:0010183: pollen tube guidance	8.74E-03
83	GO:0010193: response to ozone	9.16E-03
84	GO:0000302: response to reactive oxygen species	9.16E-03
85	GO:0016032: viral process	9.60E-03
86	GO:0009567: double fertilization forming a zygote and endosperm	1.05E-02
87	GO:0042254: ribosome biogenesis	1.06E-02
88	GO:0006414: translational elongation	1.15E-02
89	GO:0009832: plant-type cell wall biogenesis	1.48E-02
90	GO:0006811: ion transport	1.54E-02
91	GO:0009631: cold acclimation	1.59E-02
92	GO:0071555: cell wall organization	1.69E-02
93	GO:0034599: cellular response to oxidative stress	1.75E-02
94	GO:0006839: mitochondrial transport	1.86E-02
95	GO:0009408: response to heat	1.91E-02
96	GO:0006631: fatty acid metabolic process	1.91E-02
97	GO:0009926: auxin polar transport	2.03E-02
98	GO:0009644: response to high light intensity	2.14E-02
99	GO:0008643: carbohydrate transport	2.14E-02
100	GO:0009664: plant-type cell wall organization	2.38E-02
101	GO:0009846: pollen germination	2.38E-02
102	GO:0009409: response to cold	2.47E-02
103	GO:0006486: protein glycosylation	2.51E-02
104	GO:0006417: regulation of translation	2.70E-02
105	GO:0048316: seed development	2.89E-02
106	GO:0009553: embryo sac development	3.16E-02
107	GO:0009790: embryo development	4.22E-02
108	GO:0010150: leaf senescence	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
2	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
3	GO:0016881: acid-amino acid ligase activity	0.00E+00
4	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
5	GO:0003735: structural constituent of ribosome	4.62E-13
6	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	4.71E-08
7	GO:0003729: mRNA binding	7.91E-08
8	GO:0003746: translation elongation factor activity	1.35E-07
9	GO:0003756: protein disulfide isomerase activity	2.86E-07
10	GO:0047326: inositol tetrakisphosphate 5-kinase activity	9.14E-05
11	GO:0015157: oligosaccharide transmembrane transporter activity	9.14E-05
12	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	9.14E-05
13	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	9.14E-05
14	GO:0000824: inositol tetrakisphosphate 3-kinase activity	9.14E-05
15	GO:0004618: phosphoglycerate kinase activity	2.16E-04
16	GO:0019781: NEDD8 activating enzyme activity	2.16E-04
17	GO:0005457: GDP-fucose transmembrane transporter activity	3.61E-04
18	GO:0015462: ATPase-coupled protein transmembrane transporter activity	3.61E-04
19	GO:0005460: UDP-glucose transmembrane transporter activity	5.20E-04
20	GO:0070628: proteasome binding	6.90E-04
21	GO:0004576: oligosaccharyl transferase activity	6.90E-04
22	GO:0005496: steroid binding	8.73E-04
23	GO:0005459: UDP-galactose transmembrane transporter activity	8.73E-04
24	GO:0008641: small protein activating enzyme activity	8.73E-04
25	GO:0031593: polyubiquitin binding	1.07E-03
26	GO:0035252: UDP-xylosyltransferase activity	1.07E-03
27	GO:0016688: L-ascorbate peroxidase activity	1.07E-03
28	GO:0004332: fructose-bisphosphate aldolase activity	1.07E-03
29	GO:0004130: cytochrome-c peroxidase activity	1.07E-03
30	GO:0003743: translation initiation factor activity	1.10E-03
31	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.27E-03
32	GO:0004656: procollagen-proline 4-dioxygenase activity	1.27E-03
33	GO:0102391: decanoate--CoA ligase activity	1.27E-03
34	GO:0004222: metalloendopeptidase activity	1.40E-03
35	GO:0004467: long-chain fatty acid-CoA ligase activity	1.49E-03
36	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	1.49E-03
37	GO:0016831: carboxy-lyase activity	1.49E-03
38	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.49E-03
39	GO:0008235: metalloexopeptidase activity	1.49E-03
40	GO:0015288: porin activity	1.72E-03
41	GO:0008135: translation factor activity, RNA binding	1.96E-03
42	GO:0008308: voltage-gated anion channel activity	1.96E-03
43	GO:0008417: fucosyltransferase activity	2.21E-03
44	GO:0030955: potassium ion binding	2.48E-03
45	GO:0004743: pyruvate kinase activity	2.48E-03
46	GO:0008515: sucrose transmembrane transporter activity	3.03E-03
47	GO:0044183: protein binding involved in protein folding	3.03E-03
48	GO:0015114: phosphate ion transmembrane transporter activity	3.63E-03
49	GO:0015266: protein channel activity	3.63E-03
50	GO:0051082: unfolded protein binding	3.89E-03
51	GO:0051119: sugar transmembrane transporter activity	4.26E-03
52	GO:0019843: rRNA binding	4.86E-03
53	GO:0031418: L-ascorbic acid binding	4.92E-03
54	GO:0043130: ubiquitin binding	4.92E-03
55	GO:0051087: chaperone binding	5.27E-03
56	GO:0008810: cellulase activity	6.35E-03
57	GO:0008514: organic anion transmembrane transporter activity	6.73E-03
58	GO:0016853: isomerase activity	8.32E-03
59	GO:0010181: FMN binding	8.32E-03
60	GO:0004601: peroxidase activity	1.04E-02
61	GO:0003684: damaged DNA binding	1.05E-02
62	GO:0005525: GTP binding	1.30E-02
63	GO:0005509: calcium ion binding	1.52E-02
64	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.69E-02
65	GO:0051539: 4 iron, 4 sulfur cluster binding	1.86E-02
66	GO:0016491: oxidoreductase activity	2.39E-02
67	GO:0016887: ATPase activity	2.95E-02
68	GO:0020037: heme binding	2.99E-02
69	GO:0000166: nucleotide binding	3.38E-02
70	GO:0005515: protein binding	3.48E-02
71	GO:0016829: lyase activity	4.00E-02
72	GO:0030170: pyridoxal phosphate binding	4.07E-02
73	GO:0008565: protein transporter activity	4.30E-02
74	GO:0005351: sugar:proton symporter activity	4.68E-02
75	GO:0005507: copper ion binding	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0005832: chaperonin-containing T-complex	0.00E+00
2	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
3	GO:0008305: integrin complex	0.00E+00
4	GO:0005774: vacuolar membrane	3.20E-16
5	GO:0005783: endoplasmic reticulum	7.11E-16
6	GO:0016020: membrane	7.50E-14
7	GO:0009506: plasmodesma	2.86E-13
8	GO:0022627: cytosolic small ribosomal subunit	7.34E-10
9	GO:0005829: cytosol	3.94E-09
10	GO:0022626: cytosolic ribosome	6.92E-09
11	GO:0005840: ribosome	1.51E-08
12	GO:0008250: oligosaccharyltransferase complex	4.71E-08
13	GO:0005730: nucleolus	1.63E-06
14	GO:0005788: endoplasmic reticulum lumen	2.11E-06
15	GO:0022625: cytosolic large ribosomal subunit	2.26E-06
16	GO:0005886: plasma membrane	3.29E-06
17	GO:0005794: Golgi apparatus	5.76E-06
18	GO:0005618: cell wall	4.14E-05
19	GO:0005743: mitochondrial inner membrane	6.35E-05
20	GO:0005789: endoplasmic reticulum membrane	7.93E-05
21	GO:0030686: 90S preribosome	9.14E-05
22	GO:0005750: mitochondrial respiratory chain complex III	2.02E-04
23	GO:0009507: chloroplast	3.05E-04
24	GO:0005741: mitochondrial outer membrane	3.47E-04
25	GO:0046861: glyoxysomal membrane	3.61E-04
26	GO:0005744: mitochondrial inner membrane presequence translocase complex	4.50E-04
27	GO:0030904: retromer complex	1.07E-03
28	GO:0031902: late endosome membrane	1.89E-03
29	GO:0000326: protein storage vacuole	1.96E-03
30	GO:0046930: pore complex	1.96E-03
31	GO:0009514: glyoxysome	1.96E-03
32	GO:0005742: mitochondrial outer membrane translocase complex	1.96E-03
33	GO:0005852: eukaryotic translation initiation factor 3 complex	3.03E-03
34	GO:0005737: cytoplasm	3.31E-03
35	GO:0005758: mitochondrial intermembrane space	4.92E-03
36	GO:0005773: vacuole	4.98E-03
37	GO:0009505: plant-type cell wall	5.47E-03
38	GO:0015935: small ribosomal subunit	5.62E-03
39	GO:0005759: mitochondrial matrix	6.10E-03
40	GO:0005739: mitochondrion	7.48E-03
41	GO:0032580: Golgi cisterna membrane	1.05E-02
42	GO:0030529: intracellular ribonucleoprotein complex	1.19E-02
43	GO:0016021: integral component of membrane	1.21E-02
44	GO:0009707: chloroplast outer membrane	1.43E-02
45	GO:0015934: large ribosomal subunit	1.59E-02
46	GO:0090406: pollen tube	2.03E-02
47	GO:0000139: Golgi membrane	2.47E-02
48	GO:0000502: proteasome complex	2.51E-02
49	GO:0005834: heterotrimeric G-protein complex	2.96E-02
50	GO:0010287: plastoglobule	3.64E-02
51	GO:0005623: cell	3.85E-02