Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G53850

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006489: dolichyl diphosphate biosynthetic process0.00E+00
2GO:0006592: ornithine biosynthetic process0.00E+00
3GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
4GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
5GO:0046487: glyoxylate metabolic process0.00E+00
6GO:0030970: retrograde protein transport, ER to cytosol0.00E+00
7GO:0023052: signaling0.00E+00
8GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
9GO:0019428: allantoin biosynthetic process0.00E+00
10GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
11GO:1901799: negative regulation of proteasomal protein catabolic process0.00E+00
12GO:0006511: ubiquitin-dependent protein catabolic process1.97E-29
13GO:0006412: translation6.54E-12
14GO:0051603: proteolysis involved in cellular protein catabolic process1.92E-09
15GO:0030163: protein catabolic process7.27E-07
16GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly1.14E-06
17GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.76E-06
18GO:0030433: ubiquitin-dependent ERAD pathway4.17E-06
19GO:0042254: ribosome biogenesis5.56E-06
20GO:1902626: assembly of large subunit precursor of preribosome1.03E-05
21GO:0006487: protein N-linked glycosylation7.28E-05
22GO:0000027: ribosomal large subunit assembly7.28E-05
23GO:0043248: proteasome assembly9.94E-05
24GO:0015991: ATP hydrolysis coupled proton transport1.82E-04
25GO:0015798: myo-inositol transport2.48E-04
26GO:0001560: regulation of cell growth by extracellular stimulus2.48E-04
27GO:2001006: regulation of cellulose biosynthetic process2.48E-04
28GO:0019628: urate catabolic process2.48E-04
29GO:0009240: isopentenyl diphosphate biosynthetic process2.48E-04
30GO:0009852: auxin catabolic process2.48E-04
31GO:0032365: intracellular lipid transport2.48E-04
32GO:0003400: regulation of COPII vesicle coating2.48E-04
33GO:0031468: nuclear envelope reassembly2.48E-04
34GO:0010265: SCF complex assembly2.48E-04
35GO:0006144: purine nucleobase metabolic process2.48E-04
36GO:0098656: anion transmembrane transport3.41E-04
37GO:0009245: lipid A biosynthetic process3.41E-04
38GO:0050992: dimethylallyl diphosphate biosynthetic process5.49E-04
39GO:0051788: response to misfolded protein5.49E-04
40GO:0015786: UDP-glucose transport5.49E-04
41GO:0006432: phenylalanyl-tRNA aminoacylation5.49E-04
42GO:0071668: plant-type cell wall assembly5.49E-04
43GO:0043132: NAD transport5.49E-04
44GO:0006820: anion transport6.25E-04
45GO:0010043: response to zinc ion7.44E-04
46GO:0044375: regulation of peroxisome size8.92E-04
47GO:0045793: positive regulation of cell size8.92E-04
48GO:0006760: folic acid-containing compound metabolic process8.92E-04
49GO:0015783: GDP-fucose transport8.92E-04
50GO:0007030: Golgi organization8.92E-04
51GO:0046168: glycerol-3-phosphate catabolic process8.92E-04
52GO:0010498: proteasomal protein catabolic process8.92E-04
53GO:0008299: isoprenoid biosynthetic process1.20E-03
54GO:0001676: long-chain fatty acid metabolic process1.27E-03
55GO:0032877: positive regulation of DNA endoreduplication1.27E-03
56GO:0046836: glycolipid transport1.27E-03
57GO:0006241: CTP biosynthetic process1.27E-03
58GO:0072334: UDP-galactose transmembrane transport1.27E-03
59GO:0006072: glycerol-3-phosphate metabolic process1.27E-03
60GO:0009647: skotomorphogenesis1.27E-03
61GO:0006165: nucleoside diphosphate phosphorylation1.27E-03
62GO:0010255: glucose mediated signaling pathway1.27E-03
63GO:0015858: nucleoside transport1.27E-03
64GO:0006228: UTP biosynthetic process1.27E-03
65GO:0051289: protein homotetramerization1.27E-03
66GO:0015992: proton transport1.32E-03
67GO:0051781: positive regulation of cell division1.70E-03
68GO:0006183: GTP biosynthetic process1.70E-03
69GO:0010363: regulation of plant-type hypersensitive response1.70E-03
70GO:0006221: pyrimidine nucleotide biosynthetic process1.70E-03
71GO:0044205: 'de novo' UMP biosynthetic process1.70E-03
72GO:0009793: embryo development ending in seed dormancy1.83E-03
73GO:0000413: protein peptidyl-prolyl isomerization1.99E-03
74GO:1902183: regulation of shoot apical meristem development2.17E-03
75GO:0009697: salicylic acid biosynthetic process2.17E-03
76GO:0036065: fucosylation2.17E-03
77GO:0097428: protein maturation by iron-sulfur cluster transfer2.17E-03
78GO:0042176: regulation of protein catabolic process2.67E-03
79GO:0009554: megasporogenesis3.21E-03
80GO:0006120: mitochondrial electron transport, NADH to ubiquinone3.21E-03
81GO:0032880: regulation of protein localization3.79E-03
82GO:0048528: post-embryonic root development3.79E-03
83GO:0006744: ubiquinone biosynthetic process3.79E-03
84GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process3.79E-03
85GO:0031540: regulation of anthocyanin biosynthetic process4.39E-03
86GO:0016559: peroxisome fission4.39E-03
87GO:0006644: phospholipid metabolic process4.39E-03
88GO:0006506: GPI anchor biosynthetic process4.39E-03
89GO:0000028: ribosomal small subunit assembly4.39E-03
90GO:0009808: lignin metabolic process5.03E-03
91GO:0022900: electron transport chain5.03E-03
92GO:0006526: arginine biosynthetic process5.03E-03
93GO:0009832: plant-type cell wall biogenesis5.22E-03
94GO:0009060: aerobic respiration5.70E-03
95GO:0015780: nucleotide-sugar transport5.70E-03
96GO:0046685: response to arsenic-containing substance5.70E-03
97GO:0009853: photorespiration6.30E-03
98GO:0010449: root meristem growth6.40E-03
99GO:0043069: negative regulation of programmed cell death7.12E-03
100GO:0046686: response to cadmium ion7.16E-03
101GO:0006631: fatty acid metabolic process7.49E-03
102GO:0048229: gametophyte development7.88E-03
103GO:0010015: root morphogenesis7.88E-03
104GO:0071365: cellular response to auxin stimulus8.66E-03
105GO:0008643: carbohydrate transport8.79E-03
106GO:0010102: lateral root morphogenesis9.47E-03
107GO:0006626: protein targeting to mitochondrion9.47E-03
108GO:0009735: response to cytokinin9.73E-03
109GO:0048467: gynoecium development1.03E-02
110GO:0002237: response to molecule of bacterial origin1.03E-02
111GO:0006486: protein glycosylation1.10E-02
112GO:0009969: xyloglucan biosynthetic process1.12E-02
113GO:0007031: peroxisome organization1.12E-02
114GO:0006406: mRNA export from nucleus1.30E-02
115GO:0006289: nucleotide-excision repair1.30E-02
116GO:0061077: chaperone-mediated protein folding1.49E-02
117GO:0009553: embryo sac development1.52E-02
118GO:0007005: mitochondrion organization1.59E-02
119GO:0016226: iron-sulfur cluster assembly1.59E-02
120GO:0035428: hexose transmembrane transport1.59E-02
121GO:0051726: regulation of cell cycle1.66E-02
122GO:0006012: galactose metabolic process1.69E-02
123GO:0010584: pollen exine formation1.79E-02
124GO:0009306: protein secretion1.79E-02
125GO:0000398: mRNA splicing, via spliceosome1.81E-02
126GO:0010051: xylem and phloem pattern formation2.01E-02
127GO:0034220: ion transmembrane transport2.01E-02
128GO:0046323: glucose import2.12E-02
129GO:0006662: glycerol ether metabolic process2.12E-02
130GO:0061025: membrane fusion2.23E-02
131GO:0015986: ATP synthesis coupled proton transport2.23E-02
132GO:0008654: phospholipid biosynthetic process2.34E-02
133GO:0009556: microsporogenesis2.34E-02
134GO:0048825: cotyledon development2.34E-02
135GO:0010193: response to ozone2.46E-02
136GO:0006635: fatty acid beta-oxidation2.46E-02
137GO:0006633: fatty acid biosynthetic process2.47E-02
138GO:0009630: gravitropism2.58E-02
139GO:0010252: auxin homeostasis2.82E-02
140GO:0000910: cytokinesis3.07E-02
141GO:0016579: protein deubiquitination3.07E-02
142GO:0009651: response to salt stress3.09E-02
143GO:0016126: sterol biosynthetic process3.19E-02
144GO:0009617: response to bacterium3.24E-02
145GO:0010029: regulation of seed germination3.32E-02
146GO:0009627: systemic acquired resistance3.46E-02
147GO:0015995: chlorophyll biosynthetic process3.59E-02
148GO:0006888: ER to Golgi vesicle-mediated transport3.59E-02
149GO:0016049: cell growth3.72E-02
150GO:0009817: defense response to fungus, incompatible interaction3.86E-02
151GO:0009631: cold acclimation4.28E-02
152GO:0000724: double-strand break repair via homologous recombination4.42E-02
153GO:0045087: innate immune response4.56E-02
154GO:0034599: cellular response to oxidative stress4.71E-02
155GO:0009409: response to cold4.93E-02
RankGO TermAdjusted P value
1GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity0.00E+00
2GO:0051997: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity0.00E+00
3GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
4GO:0004151: dihydroorotase activity0.00E+00
5GO:0044610: FMN transmembrane transporter activity0.00E+00
6GO:0008777: acetylornithine deacetylase activity0.00E+00
7GO:0033971: hydroxyisourate hydrolase activity0.00E+00
8GO:0004298: threonine-type endopeptidase activity7.63E-41
9GO:0008233: peptidase activity4.34E-22
10GO:0003735: structural constituent of ribosome2.82E-18
11GO:0036402: proteasome-activating ATPase activity1.14E-06
12GO:0046961: proton-transporting ATPase activity, rotational mechanism2.28E-05
13GO:0004576: oligosaccharyl transferase activity4.26E-05
14GO:0017025: TBP-class protein binding5.22E-05
15GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity6.78E-05
16GO:0043130: ubiquitin binding7.28E-05
17GO:0031177: phosphopantetheine binding9.94E-05
18GO:0000035: acyl binding1.37E-04
19GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.84E-04
20GO:0015288: porin activity2.28E-04
21GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process2.28E-04
22GO:0035614: snRNA stem-loop binding2.48E-04
23GO:0003975: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity2.48E-04
24GO:0050200: plasmalogen synthase activity2.48E-04
25GO:0004452: isopentenyl-diphosphate delta-isomerase activity2.48E-04
26GO:0005090: Sar guanyl-nucleotide exchange factor activity2.48E-04
27GO:0003838: sterol 24-C-methyltransferase activity2.48E-04
28GO:0015230: FAD transmembrane transporter activity2.48E-04
29GO:0008308: voltage-gated anion channel activity2.82E-04
30GO:0008963: phospho-N-acetylmuramoyl-pentapeptide-transferase activity5.49E-04
31GO:0015228: coenzyme A transmembrane transporter activity5.49E-04
32GO:0051724: NAD transporter activity5.49E-04
33GO:0050347: trans-octaprenyltranstransferase activity5.49E-04
34GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity5.49E-04
35GO:0032934: sterol binding5.49E-04
36GO:1990585: hydroxyproline O-arabinosyltransferase activity5.49E-04
37GO:0004826: phenylalanine-tRNA ligase activity5.49E-04
38GO:0005366: myo-inositol:proton symporter activity5.49E-04
39GO:0030619: U1 snRNA binding5.49E-04
40GO:0003729: mRNA binding6.39E-04
41GO:0050897: cobalt ion binding7.44E-04
42GO:0004175: endopeptidase activity7.98E-04
43GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity8.92E-04
44GO:0005457: GDP-fucose transmembrane transporter activity8.92E-04
45GO:0052692: raffinose alpha-galactosidase activity8.92E-04
46GO:0004557: alpha-galactosidase activity8.92E-04
47GO:0017089: glycolipid transporter activity1.27E-03
48GO:0005460: UDP-glucose transmembrane transporter activity1.27E-03
49GO:0004550: nucleoside diphosphate kinase activity1.27E-03
50GO:0004659: prenyltransferase activity1.70E-03
51GO:0010011: auxin binding1.70E-03
52GO:0051861: glycolipid binding1.70E-03
53GO:0008514: organic anion transmembrane transporter activity1.70E-03
54GO:0070628: proteasome binding1.70E-03
55GO:0050302: indole-3-acetaldehyde oxidase activity1.70E-03
56GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor1.70E-03
57GO:0005459: UDP-galactose transmembrane transporter activity2.17E-03
58GO:0008198: ferrous iron binding2.17E-03
59GO:0080122: AMP transmembrane transporter activity2.17E-03
60GO:0008137: NADH dehydrogenase (ubiquinone) activity2.64E-03
61GO:0031593: polyubiquitin binding2.67E-03
62GO:0051117: ATPase binding2.67E-03
63GO:0051020: GTPase binding3.21E-03
64GO:0015217: ADP transmembrane transporter activity3.21E-03
65GO:0102391: decanoate--CoA ligase activity3.21E-03
66GO:0004602: glutathione peroxidase activity3.21E-03
67GO:0005347: ATP transmembrane transporter activity3.21E-03
68GO:0019843: rRNA binding3.46E-03
69GO:0004467: long-chain fatty acid-CoA ligase activity3.79E-03
70GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity3.79E-03
71GO:0005338: nucleotide-sugar transmembrane transporter activity3.79E-03
72GO:0008143: poly(A) binding3.79E-03
73GO:0004034: aldose 1-epimerase activity4.39E-03
74GO:0052747: sinapyl alcohol dehydrogenase activity4.39E-03
75GO:0015078: hydrogen ion transmembrane transporter activity5.03E-03
76GO:0008417: fucosyltransferase activity5.70E-03
77GO:0030234: enzyme regulator activity7.12E-03
78GO:0004161: dimethylallyltranstransferase activity7.88E-03
79GO:0004129: cytochrome-c oxidase activity7.88E-03
80GO:0008794: arsenate reductase (glutaredoxin) activity7.88E-03
81GO:0045551: cinnamyl-alcohol dehydrogenase activity8.66E-03
82GO:0000049: tRNA binding8.66E-03
83GO:0051537: 2 iron, 2 sulfur cluster binding8.79E-03
84GO:0016887: ATPase activity9.07E-03
85GO:0005528: FK506 binding1.30E-02
86GO:0036459: thiol-dependent ubiquitinyl hydrolase activity1.49E-02
87GO:0015035: protein disulfide oxidoreductase activity1.61E-02
88GO:0047134: protein-disulfide reductase activity1.90E-02
89GO:0004791: thioredoxin-disulfide reductase activity2.23E-02
90GO:0005355: glucose transmembrane transporter activity2.23E-02
91GO:0005515: protein binding2.32E-02
92GO:0004872: receptor activity2.34E-02
93GO:0004843: thiol-dependent ubiquitin-specific protease activity2.46E-02
94GO:0005351: sugar:proton symporter activity2.65E-02
95GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.70E-02
96GO:0003684: damaged DNA binding2.82E-02
97GO:0008237: metallopeptidase activity2.94E-02
98GO:0016597: amino acid binding3.07E-02
99GO:0051213: dioxygenase activity3.19E-02
100GO:0015250: water channel activity3.19E-02
101GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.86E-02
102GO:0005096: GTPase activator activity4.00E-02
103GO:0003746: translation elongation factor activity4.56E-02
104GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.56E-02
105GO:0003993: acid phosphatase activity4.71E-02
RankGO TermAdjusted P value
1GO:0019774: proteasome core complex, beta-subunit complex0.00E+00
2GO:0000502: proteasome complex3.40E-57
3GO:0005839: proteasome core complex7.63E-41
4GO:0005829: cytosol1.82E-23
5GO:0019773: proteasome core complex, alpha-subunit complex3.50E-20
6GO:0022626: cytosolic ribosome6.52E-17
7GO:0022625: cytosolic large ribosomal subunit8.52E-16
8GO:0005840: ribosome3.89E-15
9GO:0005774: vacuolar membrane1.32E-13
10GO:0005737: cytoplasm1.43E-09
11GO:0008541: proteasome regulatory particle, lid subcomplex4.31E-09
12GO:0005773: vacuole2.28E-08
13GO:0031595: nuclear proteasome complex2.47E-08
14GO:0008540: proteasome regulatory particle, base subcomplex1.86E-07
15GO:0005730: nucleolus1.84E-06
16GO:0031597: cytosolic proteasome complex2.00E-06
17GO:0046861: glyoxysomal membrane1.03E-05
18GO:0005783: endoplasmic reticulum1.99E-05
19GO:0008250: oligosaccharyltransferase complex6.78E-05
20GO:0009506: plasmodesma1.36E-04
21GO:0031234: extrinsic component of cytoplasmic side of plasma membrane2.48E-04
22GO:0022627: cytosolic small ribosomal subunit2.72E-04
23GO:0046930: pore complex2.82E-04
24GO:0009514: glyoxysome2.82E-04
25GO:0005779: integral component of peroxisomal membrane2.82E-04
26GO:0005747: mitochondrial respiratory chain complex I3.27E-04
27GO:0005788: endoplasmic reticulum lumen4.75E-04
28GO:0016020: membrane5.06E-04
29GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain5.49E-04
30GO:0005886: plasma membrane7.84E-04
31GO:0005838: proteasome regulatory particle8.92E-04
32GO:0005853: eukaryotic translation elongation factor 1 complex8.92E-04
33GO:0005777: peroxisome9.77E-04
34GO:0005758: mitochondrial intermembrane space1.09E-03
35GO:0045271: respiratory chain complex I1.20E-03
36GO:0070469: respiratory chain1.20E-03
37GO:0009331: glycerol-3-phosphate dehydrogenase complex1.27E-03
38GO:0033180: proton-transporting V-type ATPase, V1 domain1.27E-03
39GO:1990726: Lsm1-7-Pat1 complex1.27E-03
40GO:0005741: mitochondrial outer membrane1.32E-03
41GO:0033179: proton-transporting V-type ATPase, V0 domain1.70E-03
42GO:0005746: mitochondrial respiratory chain2.17E-03
43GO:0005794: Golgi apparatus2.51E-03
44GO:0005801: cis-Golgi network3.21E-03
45GO:0005778: peroxisomal membrane3.40E-03
46GO:0005688: U6 snRNP4.39E-03
47GO:0005759: mitochondrial matrix4.62E-03
48GO:0046540: U4/U6 x U5 tri-snRNP complex5.03E-03
49GO:0005763: mitochondrial small ribosomal subunit5.70E-03
50GO:0005685: U1 snRNP5.70E-03
51GO:0015934: large ribosomal subunit5.75E-03
52GO:0000325: plant-type vacuole5.75E-03
53GO:0071011: precatalytic spliceosome6.40E-03
54GO:0071013: catalytic step 2 spliceosome7.88E-03
55GO:0031966: mitochondrial membrane1.02E-02
56GO:0030176: integral component of endoplasmic reticulum membrane1.12E-02
57GO:0005753: mitochondrial proton-transporting ATP synthase complex1.12E-02
58GO:0005769: early endosome1.21E-02
59GO:0009536: plastid1.43E-02
60GO:0015935: small ribosomal subunit1.49E-02
61GO:0005618: cell wall1.70E-02
62GO:0005732: small nucleolar ribonucleoprotein complex1.71E-02
63GO:0005743: mitochondrial inner membrane1.79E-02
64GO:0009507: chloroplast1.83E-02
65GO:0009705: plant-type vacuole membrane2.71E-02
66GO:0032580: Golgi cisterna membrane2.82E-02
67GO:0000932: P-body3.19E-02
68GO:0000786: nucleosome4.42E-02
69GO:0005819: spindle4.86E-02
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Gene type



Gene DE type