co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G53710

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0001789: G-protein coupled receptor signaling pathway, coupled to S1P second messenger	0.00E+00
2	GO:0015785: UDP-galactose transport	0.00E+00
3	GO:0001881: receptor recycling	0.00E+00
4	GO:0006592: ornithine biosynthetic process	0.00E+00
5	GO:0006511: ubiquitin-dependent protein catabolic process	3.37E-08
6	GO:0008333: endosome to lysosome transport	6.89E-07
7	GO:0006506: GPI anchor biosynthetic process	2.21E-05
8	GO:0010265: SCF complex assembly	5.48E-05
9	GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic	5.48E-05
10	GO:0061014: positive regulation of mRNA catabolic process	5.48E-05
11	GO:0015786: UDP-glucose transport	1.34E-04
12	GO:2000072: regulation of defense response to fungus, incompatible interaction	1.34E-04
13	GO:0051788: response to misfolded protein	1.34E-04
14	GO:1901703: protein localization involved in auxin polar transport	1.34E-04
15	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	2.28E-04
16	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	2.28E-04
17	GO:0042147: retrograde transport, endosome to Golgi	2.49E-04
18	GO:0009647: skotomorphogenesis	3.33E-04
19	GO:0010587: miRNA catabolic process	3.33E-04
20	GO:0006168: adenine salvage	3.33E-04
21	GO:0006882: cellular zinc ion homeostasis	3.33E-04
22	GO:0001676: long-chain fatty acid metabolic process	3.33E-04
23	GO:0046513: ceramide biosynthetic process	3.33E-04
24	GO:0006166: purine ribonucleoside salvage	3.33E-04
25	GO:0006571: tyrosine biosynthetic process	3.33E-04
26	GO:0030163: protein catabolic process	4.10E-04
27	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	4.45E-04
28	GO:0097428: protein maturation by iron-sulfur cluster transfer	5.66E-04
29	GO:0044209: AMP salvage	5.66E-04
30	GO:0045116: protein neddylation	5.66E-04
31	GO:0036065: fucosylation	5.66E-04
32	GO:0043248: proteasome assembly	6.92E-04
33	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	8.25E-04
34	GO:0009094: L-phenylalanine biosynthetic process	8.25E-04
35	GO:0070370: cellular heat acclimation	9.62E-04
36	GO:0048528: post-embryonic root development	9.62E-04
37	GO:0006402: mRNA catabolic process	1.11E-03
38	GO:0009690: cytokinin metabolic process	1.11E-03
39	GO:0031540: regulation of anthocyanin biosynthetic process	1.11E-03
40	GO:0040029: regulation of gene expression, epigenetic	1.11E-03
41	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.11E-03
42	GO:0006526: arginine biosynthetic process	1.26E-03
43	GO:0007186: G-protein coupled receptor signaling pathway	1.26E-03
44	GO:0006486: protein glycosylation	1.42E-03
45	GO:0051603: proteolysis involved in cellular protein catabolic process	1.47E-03
46	GO:0042761: very long-chain fatty acid biosynthetic process	1.58E-03
47	GO:0071577: zinc II ion transmembrane transport	1.58E-03
48	GO:0072593: reactive oxygen species metabolic process	1.93E-03
49	GO:0016925: protein sumoylation	2.11E-03
50	GO:0010102: lateral root morphogenesis	2.30E-03
51	GO:0009785: blue light signaling pathway	2.30E-03
52	GO:0007034: vacuolar transport	2.49E-03
53	GO:0009969: xyloglucan biosynthetic process	2.70E-03
54	GO:0042753: positive regulation of circadian rhythm	2.90E-03
55	GO:0080147: root hair cell development	3.11E-03
56	GO:0006289: nucleotide-excision repair	3.11E-03
57	GO:0009116: nucleoside metabolic process	3.11E-03
58	GO:0010187: negative regulation of seed germination	3.11E-03
59	GO:0010073: meristem maintenance	3.32E-03
60	GO:0007623: circadian rhythm	3.43E-03
61	GO:0019748: secondary metabolic process	3.77E-03
62	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.83E-03
63	GO:0001944: vasculature development	4.00E-03
64	GO:0071215: cellular response to abscisic acid stimulus	4.00E-03
65	GO:0042127: regulation of cell proliferation	4.23E-03
66	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	4.47E-03
67	GO:0010051: xylem and phloem pattern formation	4.71E-03
68	GO:0008360: regulation of cell shape	4.96E-03
69	GO:0048825: cotyledon development	5.48E-03
70	GO:0009749: response to glucose	5.48E-03
71	GO:0006623: protein targeting to vacuole	5.48E-03
72	GO:0080156: mitochondrial mRNA modification	5.74E-03
73	GO:0010193: response to ozone	5.74E-03
74	GO:0009630: gravitropism	6.00E-03
75	GO:0010286: heat acclimation	6.83E-03
76	GO:0016579: protein deubiquitination	7.11E-03
77	GO:0010027: thylakoid membrane organization	7.40E-03
78	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	7.69E-03
79	GO:0048573: photoperiodism, flowering	8.29E-03
80	GO:0008219: cell death	8.91E-03
81	GO:0009817: defense response to fungus, incompatible interaction	8.91E-03
82	GO:0009832: plant-type cell wall biogenesis	9.22E-03
83	GO:0006499: N-terminal protein myristoylation	9.54E-03
84	GO:0009408: response to heat	9.65E-03
85	GO:0048527: lateral root development	9.86E-03
86	GO:0010119: regulation of stomatal movement	9.86E-03
87	GO:0010043: response to zinc ion	9.86E-03
88	GO:0009867: jasmonic acid mediated signaling pathway	1.05E-02
89	GO:0045087: innate immune response	1.05E-02
90	GO:0030001: metal ion transport	1.15E-02
91	GO:0006839: mitochondrial transport	1.15E-02
92	GO:0006631: fatty acid metabolic process	1.19E-02
93	GO:0009736: cytokinin-activated signaling pathway	1.55E-02
94	GO:0009740: gibberellic acid mediated signaling pathway	1.91E-02
95	GO:0018105: peptidyl-serine phosphorylation	2.04E-02
96	GO:0009058: biosynthetic process	2.43E-02
97	GO:0009845: seed germination	2.47E-02
98	GO:0010228: vegetative to reproductive phase transition of meristem	3.04E-02
99	GO:0009739: response to gibberellin	3.19E-02
100	GO:0071555: cell wall organization	3.48E-02
101	GO:0009733: response to auxin	3.90E-02
102	GO:0009826: unidimensional cell growth	3.91E-02
103	GO:0009723: response to ethylene	4.45E-02
104	GO:0048366: leaf development	4.51E-02

Rank	GO Term	Adjusted P value
1	GO:0008777: acetylornithine deacetylase activity	0.00E+00
2	GO:0016881: acid-amino acid ligase activity	0.00E+00
3	GO:0055105: ubiquitin-protein transferase inhibitor activity	0.00E+00
4	GO:0016247: channel regulator activity	0.00E+00
5	GO:0005095: GTPase inhibitor activity	0.00E+00
6	GO:0004298: threonine-type endopeptidase activity	2.23E-10
7	GO:0008233: peptidase activity	2.26E-07
8	GO:0008417: fucosyltransferase activity	3.56E-05
9	GO:0004534: 5'-3' exoribonuclease activity	1.34E-04
10	GO:0050291: sphingosine N-acyltransferase activity	1.34E-04
11	GO:0019781: NEDD8 activating enzyme activity	1.34E-04
12	GO:0001664: G-protein coupled receptor binding	2.28E-04
13	GO:0031683: G-protein beta/gamma-subunit complex binding	2.28E-04
14	GO:0003999: adenine phosphoribosyltransferase activity	3.33E-04
15	GO:0005460: UDP-glucose transmembrane transporter activity	3.33E-04
16	GO:0070628: proteasome binding	4.45E-04
17	GO:0008409: 5'-3' exonuclease activity	4.45E-04
18	GO:0031386: protein tag	5.66E-04
19	GO:0005459: UDP-galactose transmembrane transporter activity	5.66E-04
20	GO:0008641: small protein activating enzyme activity	5.66E-04
21	GO:0008375: acetylglucosaminyltransferase activity	5.76E-04
22	GO:0031593: polyubiquitin binding	6.92E-04
23	GO:0004602: glutathione peroxidase activity	8.25E-04
24	GO:0019887: protein kinase regulator activity	8.25E-04
25	GO:0004656: procollagen-proline 4-dioxygenase activity	8.25E-04
26	GO:0051020: GTPase binding	8.25E-04
27	GO:0102391: decanoate--CoA ligase activity	8.25E-04
28	GO:0004467: long-chain fatty acid-CoA ligase activity	9.62E-04
29	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	9.62E-04
30	GO:0000989: transcription factor activity, transcription factor binding	1.41E-03
31	GO:0008559: xenobiotic-transporting ATPase activity	1.93E-03
32	GO:0016757: transferase activity, transferring glycosyl groups	2.19E-03
33	GO:0003712: transcription cofactor activity	2.70E-03
34	GO:0031418: L-ascorbic acid binding	3.11E-03
35	GO:0005385: zinc ion transmembrane transporter activity	3.11E-03
36	GO:0043130: ubiquitin binding	3.11E-03
37	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	3.54E-03
38	GO:0046873: metal ion transmembrane transporter activity	4.96E-03
39	GO:0004843: thiol-dependent ubiquitin-specific protease activity	5.74E-03
40	GO:0003684: damaged DNA binding	6.55E-03
41	GO:0008237: metallopeptidase activity	6.83E-03
42	GO:0003697: single-stranded DNA binding	1.05E-02
43	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.05E-02
44	GO:0003993: acid phosphatase activity	1.09E-02
45	GO:0004185: serine-type carboxypeptidase activity	1.26E-02
46	GO:0043621: protein self-association	1.33E-02
47	GO:0005198: structural molecule activity	1.37E-02
48	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.79E-02
49	GO:0016746: transferase activity, transferring acyl groups	2.04E-02
50	GO:0005515: protein binding	2.19E-02
51	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.38E-02
52	GO:0008565: protein transporter activity	2.66E-02
53	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.49E-02
54	GO:0008168: methyltransferase activity	3.91E-02
55	GO:0046982: protein heterodimerization activity	3.96E-02
56	GO:0004601: peroxidase activity	4.01E-02

Rank	GO Term	Adjusted P value
1	GO:0005839: proteasome core complex	2.23E-10
2	GO:0000502: proteasome complex	1.67E-09
3	GO:0019773: proteasome core complex, alpha-subunit complex	1.83E-07
4	GO:0005829: cytosol	2.62E-06
5	GO:0005771: multivesicular body	8.37E-06
6	GO:0030904: retromer complex	8.37E-06
7	GO:0046861: glyoxysomal membrane	2.28E-04
8	GO:0005956: protein kinase CK2 complex	3.33E-04
9	GO:0032580: Golgi cisterna membrane	4.36E-04
10	GO:0005844: polysome	4.45E-04
11	GO:0031902: late endosome membrane	9.88E-04
12	GO:0009514: glyoxysome	1.26E-03
13	GO:0031090: organelle membrane	1.41E-03
14	GO:0010494: cytoplasmic stress granule	1.41E-03
15	GO:0005794: Golgi apparatus	1.52E-03
16	GO:0008541: proteasome regulatory particle, lid subcomplex	1.93E-03
17	GO:0005789: endoplasmic reticulum membrane	2.62E-03
18	GO:0022626: cytosolic ribosome	2.76E-03
19	GO:0000932: P-body	7.40E-03
20	GO:0005783: endoplasmic reticulum	7.71E-03
21	GO:0019005: SCF ubiquitin ligase complex	8.91E-03
22	GO:0005774: vacuolar membrane	9.05E-03
23	GO:0005737: cytoplasm	9.41E-03
24	GO:0015934: large ribosomal subunit	9.86E-03
25	GO:0000325: plant-type vacuole	9.86E-03
26	GO:0043231: intracellular membrane-bounded organelle	1.06E-02
27	GO:0005819: spindle	1.12E-02
28	GO:0005834: heterotrimeric G-protein complex	1.83E-02
29	GO:0005732: small nucleolar ribonucleoprotein complex	2.12E-02
30	GO:0009524: phragmoplast	2.43E-02
31	GO:0005802: trans-Golgi network	2.76E-02
32	GO:0005768: endosome	3.13E-02
33	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	4.29E-02
34	GO:0016020: membrane	4.54E-02
35	GO:0016021: integral component of membrane	4.81E-02