co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G53280

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032780: negative regulation of ATPase activity	0.00E+00
2	GO:0016487: farnesol metabolic process	0.00E+00
3	GO:0046292: formaldehyde metabolic process	0.00E+00
4	GO:0016093: polyprenol metabolic process	0.00E+00
5	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
6	GO:0019428: allantoin biosynthetic process	0.00E+00
7	GO:0006721: terpenoid metabolic process	0.00E+00
8	GO:0006069: ethanol oxidation	0.00E+00
9	GO:0006720: isoprenoid metabolic process	0.00E+00
10	GO:0006592: ornithine biosynthetic process	0.00E+00
11	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	5.98E-07
12	GO:0055114: oxidation-reduction process	1.67E-06
13	GO:0006221: pyrimidine nucleotide biosynthetic process	1.88E-05
14	GO:0046686: response to cadmium ion	2.04E-05
15	GO:0009853: photorespiration	2.46E-05
16	GO:0006487: protein N-linked glycosylation	2.55E-05
17	GO:0006012: galactose metabolic process	4.68E-05
18	GO:0001560: regulation of cell growth by extracellular stimulus	1.54E-04
19	GO:0019628: urate catabolic process	1.54E-04
20	GO:0009240: isopentenyl diphosphate biosynthetic process	1.54E-04
21	GO:0006007: glucose catabolic process	1.54E-04
22	GO:0031468: nuclear envelope reassembly	1.54E-04
23	GO:0010265: SCF complex assembly	1.54E-04
24	GO:0006144: purine nucleobase metabolic process	1.54E-04
25	GO:0006511: ubiquitin-dependent protein catabolic process	3.45E-04
26	GO:0030010: establishment of cell polarity	3.51E-04
27	GO:0006432: phenylalanyl-tRNA aminoacylation	3.51E-04
28	GO:0019441: tryptophan catabolic process to kynurenine	3.51E-04
29	GO:0097054: L-glutamate biosynthetic process	3.51E-04
30	GO:0050992: dimethylallyl diphosphate biosynthetic process	3.51E-04
31	GO:0046034: ATP metabolic process	5.75E-04
32	GO:0008333: endosome to lysosome transport	5.75E-04
33	GO:0015940: pantothenate biosynthetic process	5.75E-04
34	GO:0030835: negative regulation of actin filament depolymerization	5.75E-04
35	GO:0006760: folic acid-containing compound metabolic process	5.75E-04
36	GO:0061077: chaperone-mediated protein folding	6.92E-04
37	GO:0015992: proton transport	6.92E-04
38	GO:0006107: oxaloacetate metabolic process	8.23E-04
39	GO:0006537: glutamate biosynthetic process	8.23E-04
40	GO:0010255: glucose mediated signaling pathway	8.23E-04
41	GO:1901332: negative regulation of lateral root development	8.23E-04
42	GO:0051289: protein homotetramerization	8.23E-04
43	GO:0006749: glutathione metabolic process	1.09E-03
44	GO:0044205: 'de novo' UMP biosynthetic process	1.09E-03
45	GO:0034613: cellular protein localization	1.09E-03
46	GO:0009755: hormone-mediated signaling pathway	1.09E-03
47	GO:0019676: ammonia assimilation cycle	1.09E-03
48	GO:0006662: glycerol ether metabolic process	1.11E-03
49	GO:0015986: ATP synthesis coupled proton transport	1.19E-03
50	GO:0018344: protein geranylgeranylation	1.38E-03
51	GO:0006555: methionine metabolic process	1.70E-03
52	GO:0009117: nucleotide metabolic process	1.70E-03
53	GO:0048364: root development	1.77E-03
54	GO:0019509: L-methionine salvage from methylthioadenosine	2.03E-03
55	GO:0051693: actin filament capping	2.39E-03
56	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	2.39E-03
57	GO:0005978: glycogen biosynthetic process	2.77E-03
58	GO:0006506: GPI anchor biosynthetic process	2.77E-03
59	GO:0000028: ribosomal small subunit assembly	2.77E-03
60	GO:0009880: embryonic pattern specification	3.16E-03
61	GO:0006526: arginine biosynthetic process	3.16E-03
62	GO:0010204: defense response signaling pathway, resistance gene-independent	3.16E-03
63	GO:0006099: tricarboxylic acid cycle	3.36E-03
64	GO:0034599: cellular response to oxidative stress	3.36E-03
65	GO:0006754: ATP biosynthetic process	3.58E-03
66	GO:0042761: very long-chain fatty acid biosynthetic process	4.01E-03
67	GO:0006896: Golgi to vacuole transport	4.46E-03
68	GO:0009870: defense response signaling pathway, resistance gene-dependent	4.46E-03
69	GO:0000103: sulfate assimilation	4.46E-03
70	GO:0043069: negative regulation of programmed cell death	4.46E-03
71	GO:0010015: root morphogenesis	4.92E-03
72	GO:0006486: protein glycosylation	5.56E-03
73	GO:0051603: proteolysis involved in cellular protein catabolic process	5.75E-03
74	GO:0006807: nitrogen compound metabolic process	5.91E-03
75	GO:0006108: malate metabolic process	5.91E-03
76	GO:0045454: cell redox homeostasis	6.33E-03
77	GO:0048440: carpel development	6.42E-03
78	GO:0002237: response to molecule of bacterial origin	6.42E-03
79	GO:0007034: vacuolar transport	6.42E-03
80	GO:0007030: Golgi organization	6.95E-03
81	GO:0016569: covalent chromatin modification	7.45E-03
82	GO:0051017: actin filament bundle assembly	8.05E-03
83	GO:2000377: regulation of reactive oxygen species metabolic process	8.05E-03
84	GO:0008299: isoprenoid biosynthetic process	8.63E-03
85	GO:0051260: protein homooligomerization	9.22E-03
86	GO:0010431: seed maturation	9.22E-03
87	GO:0016226: iron-sulfur cluster assembly	9.82E-03
88	GO:0019748: secondary metabolic process	9.82E-03
89	GO:0006979: response to oxidative stress	1.17E-02
90	GO:0042147: retrograde transport, endosome to Golgi	1.17E-02
91	GO:0015991: ATP hydrolysis coupled proton transport	1.24E-02
92	GO:0000413: protein peptidyl-prolyl isomerization	1.24E-02
93	GO:0010051: xylem and phloem pattern formation	1.24E-02
94	GO:0010118: stomatal movement	1.24E-02
95	GO:0010154: fruit development	1.31E-02
96	GO:0006520: cellular amino acid metabolic process	1.31E-02
97	GO:0010182: sugar mediated signaling pathway	1.31E-02
98	GO:0061025: membrane fusion	1.37E-02
99	GO:0006623: protein targeting to vacuole	1.44E-02
100	GO:0048825: cotyledon development	1.44E-02
101	GO:0009749: response to glucose	1.44E-02
102	GO:0019252: starch biosynthetic process	1.44E-02
103	GO:0008654: phospholipid biosynthetic process	1.44E-02
104	GO:0010228: vegetative to reproductive phase transition of meristem	1.44E-02
105	GO:0009735: response to cytokinin	1.53E-02
106	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.54E-02
107	GO:0010090: trichome morphogenesis	1.66E-02
108	GO:0009555: pollen development	1.71E-02
109	GO:0010286: heat acclimation	1.81E-02
110	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.05E-02
111	GO:0009826: unidimensional cell growth	2.05E-02
112	GO:0006508: proteolysis	2.12E-02
113	GO:0005975: carbohydrate metabolic process	2.16E-02
114	GO:0015995: chlorophyll biosynthetic process	2.21E-02
115	GO:0006888: ER to Golgi vesicle-mediated transport	2.21E-02
116	GO:0008219: cell death	2.38E-02
117	GO:0010311: lateral root formation	2.46E-02
118	GO:0006499: N-terminal protein myristoylation	2.55E-02
119	GO:0009407: toxin catabolic process	2.55E-02
120	GO:0048527: lateral root development	2.64E-02
121	GO:0010043: response to zinc ion	2.64E-02
122	GO:0045087: innate immune response	2.81E-02
123	GO:0045892: negative regulation of transcription, DNA-templated	3.21E-02
124	GO:0006886: intracellular protein transport	3.26E-02
125	GO:0009636: response to toxic substance	3.66E-02
126	GO:0009965: leaf morphogenesis	3.66E-02
127	GO:0032259: methylation	3.72E-02
128	GO:0006813: potassium ion transport	4.17E-02
129	GO:0009736: cytokinin-activated signaling pathway	4.17E-02
130	GO:0010224: response to UV-B	4.27E-02
131	GO:0008152: metabolic process	4.28E-02
132	GO:0006096: glycolytic process	4.69E-02
133	GO:0048316: seed development	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0050152: omega-amidase activity	0.00E+00
2	GO:0009940: amino-terminal vacuolar sorting propeptide binding	0.00E+00
3	GO:0052671: geranylgeraniol kinase activity	0.00E+00
4	GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity	0.00E+00
5	GO:0015930: glutamate synthase activity	0.00E+00
6	GO:0004151: dihydroorotase activity	0.00E+00
7	GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity	0.00E+00
8	GO:0047886: farnesol dehydrogenase activity	0.00E+00
9	GO:0008777: acetylornithine deacetylase activity	0.00E+00
10	GO:0033971: hydroxyisourate hydrolase activity	0.00E+00
11	GO:0042030: ATPase inhibitor activity	0.00E+00
12	GO:0051997: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity	0.00E+00
13	GO:0052670: geraniol kinase activity	0.00E+00
14	GO:0052668: farnesol kinase activity	0.00E+00
15	GO:0080007: S-nitrosoglutathione reductase activity	0.00E+00
16	GO:0004298: threonine-type endopeptidase activity	1.12E-10
17	GO:0008137: NADH dehydrogenase (ubiquinone) activity	8.15E-08
18	GO:0004034: aldose 1-epimerase activity	1.50E-06
19	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.01E-05
20	GO:0008233: peptidase activity	1.48E-05
21	GO:0004576: oligosaccharyl transferase activity	1.88E-05
22	GO:0050897: cobalt ion binding	2.04E-05
23	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	3.07E-05
24	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	7.66E-05
25	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	1.54E-04
26	GO:0010209: vacuolar sorting signal binding	1.54E-04
27	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	1.54E-04
28	GO:0019707: protein-cysteine S-acyltransferase activity	1.54E-04
29	GO:0016041: glutamate synthase (ferredoxin) activity	1.54E-04
30	GO:0045153: electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity	1.54E-04
31	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	3.51E-04
32	GO:0004826: phenylalanine-tRNA ligase activity	3.51E-04
33	GO:0004061: arylformamidase activity	3.51E-04
34	GO:0005528: FK506 binding	5.74E-04
35	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	5.75E-04
36	GO:0004557: alpha-galactosidase activity	5.75E-04
37	GO:0004663: Rab geranylgeranyltransferase activity	5.75E-04
38	GO:0052692: raffinose alpha-galactosidase activity	5.75E-04
39	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.99E-04
40	GO:0035529: NADH pyrophosphatase activity	8.23E-04
41	GO:0047134: protein-disulfide reductase activity	9.61E-04
42	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	1.09E-03
43	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.09E-03
44	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.09E-03
45	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.09E-03
46	GO:0004791: thioredoxin-disulfide reductase activity	1.19E-03
47	GO:0016853: isomerase activity	1.19E-03
48	GO:0051538: 3 iron, 4 sulfur cluster binding	1.38E-03
49	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.55E-03
50	GO:0004605: phosphatidate cytidylyltransferase activity	1.70E-03
51	GO:0051117: ATPase binding	1.70E-03
52	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.70E-03
53	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.70E-03
54	GO:0051920: peroxiredoxin activity	2.03E-03
55	GO:0004602: glutathione peroxidase activity	2.03E-03
56	GO:0008143: poly(A) binding	2.39E-03
57	GO:0008320: protein transmembrane transporter activity	2.39E-03
58	GO:0035064: methylated histone binding	2.77E-03
59	GO:0016209: antioxidant activity	2.77E-03
60	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	3.58E-03
61	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.58E-03
62	GO:0051539: 4 iron, 4 sulfur cluster binding	3.66E-03
63	GO:0045309: protein phosphorylated amino acid binding	4.01E-03
64	GO:0047617: acyl-CoA hydrolase activity	4.01E-03
65	GO:0004129: cytochrome-c oxidase activity	4.92E-03
66	GO:0019904: protein domain specific binding	4.92E-03
67	GO:0000049: tRNA binding	5.41E-03
68	GO:0004022: alcohol dehydrogenase (NAD) activity	5.91E-03
69	GO:0004089: carbonate dehydratase activity	5.91E-03
70	GO:0004175: endopeptidase activity	6.42E-03
71	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	6.78E-03
72	GO:0043130: ubiquitin binding	8.05E-03
73	GO:0003714: transcription corepressor activity	8.05E-03
74	GO:0051536: iron-sulfur cluster binding	8.05E-03
75	GO:0015035: protein disulfide oxidoreductase activity	8.15E-03
76	GO:0046872: metal ion binding	1.21E-02
77	GO:0005249: voltage-gated potassium channel activity	1.24E-02
78	GO:0050662: coenzyme binding	1.37E-02
79	GO:0051015: actin filament binding	1.66E-02
80	GO:0016491: oxidoreductase activity	1.75E-02
81	GO:0008237: metallopeptidase activity	1.81E-02
82	GO:0008168: methyltransferase activity	2.05E-02
83	GO:0004601: peroxidase activity	2.13E-02
84	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.13E-02
85	GO:0004683: calmodulin-dependent protein kinase activity	2.21E-02
86	GO:0030246: carbohydrate binding	2.48E-02
87	GO:0030145: manganese ion binding	2.64E-02
88	GO:0005507: copper ion binding	2.67E-02
89	GO:0042393: histone binding	3.09E-02
90	GO:0004364: glutathione transferase activity	3.27E-02
91	GO:0004185: serine-type carboxypeptidase activity	3.37E-02
92	GO:0043621: protein self-association	3.56E-02
93	GO:0051537: 2 iron, 2 sulfur cluster binding	3.56E-02
94	GO:0016787: hydrolase activity	3.58E-02
95	GO:0005198: structural molecule activity	3.66E-02
96	GO:0003924: GTPase activity	3.89E-02
97	GO:0005506: iron ion binding	4.04E-02
98	GO:0008234: cysteine-type peptidase activity	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0005747: mitochondrial respiratory chain complex I	2.16E-15
2	GO:0005829: cytosol	7.63E-11
3	GO:0005839: proteasome core complex	1.12E-10
4	GO:0000502: proteasome complex	1.44E-07
5	GO:0045271: respiratory chain complex I	6.13E-07
6	GO:0019773: proteasome core complex, alpha-subunit complex	2.21E-06
7	GO:0005753: mitochondrial proton-transporting ATP synthase complex	1.78E-05
8	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	1.88E-05
9	GO:0005746: mitochondrial respiratory chain	3.07E-05
10	GO:0008250: oligosaccharyltransferase complex	3.07E-05
11	GO:0005783: endoplasmic reticulum	5.19E-05
12	GO:0031966: mitochondrial membrane	6.28E-05
13	GO:0005773: vacuole	7.31E-05
14	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	1.11E-04
15	GO:0045273: respiratory chain complex II	1.11E-04
16	GO:0031234: extrinsic component of cytoplasmic side of plasma membrane	1.54E-04
17	GO:0019774: proteasome core complex, beta-subunit complex	1.54E-04
18	GO:0005662: DNA replication factor A complex	1.54E-04
19	GO:0009507: chloroplast	2.49E-04
20	GO:0005774: vacuolar membrane	2.75E-04
21	GO:0005739: mitochondrion	5.12E-04
22	GO:0033180: proton-transporting V-type ATPase, V1 domain	8.23E-04
23	GO:0008076: voltage-gated potassium channel complex	8.23E-04
24	GO:0005968: Rab-protein geranylgeranyltransferase complex	8.23E-04
25	GO:0009536: plastid	1.16E-03
26	GO:0030904: retromer complex	1.70E-03
27	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	1.70E-03
28	GO:0000974: Prp19 complex	1.70E-03
29	GO:0005771: multivesicular body	1.70E-03
30	GO:0032588: trans-Golgi network membrane	1.70E-03
31	GO:0005789: endoplasmic reticulum membrane	1.78E-03
32	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	2.39E-03
33	GO:0009501: amyloplast	2.77E-03
34	GO:0005763: mitochondrial small ribosomal subunit	3.58E-03
35	GO:0031902: late endosome membrane	3.81E-03
36	GO:0030665: clathrin-coated vesicle membrane	4.01E-03
37	GO:0071011: precatalytic spliceosome	4.01E-03
38	GO:0017119: Golgi transport complex	4.46E-03
39	GO:0071013: catalytic step 2 spliceosome	4.92E-03
40	GO:0005750: mitochondrial respiratory chain complex III	6.42E-03
41	GO:0005758: mitochondrial intermembrane space	8.05E-03
42	GO:0005794: Golgi apparatus	8.14E-03
43	GO:0070469: respiratory chain	8.63E-03
44	GO:0016020: membrane	9.03E-03
45	GO:0048046: apoplast	9.79E-03
46	GO:0005759: mitochondrial matrix	1.25E-02
47	GO:0005770: late endosome	1.31E-02
48	GO:0032580: Golgi cisterna membrane	1.74E-02
49	GO:0010319: stromule	1.81E-02
50	GO:0005777: peroxisome	2.04E-02
51	GO:0005788: endoplasmic reticulum lumen	2.05E-02
52	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.33E-02
53	GO:0031969: chloroplast membrane	2.64E-02
54	GO:0005819: spindle	2.99E-02
55	GO:0005635: nuclear envelope	4.37E-02
56	GO:0016607: nuclear speck	4.80E-02