GO Enrichment Analysis of Co-expressed Genes with
AT1G53240
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009236: cobalamin biosynthetic process | 0.00E+00 |
| 2 | GO:0018293: protein-FAD linkage | 0.00E+00 |
| 3 | GO:0034553: mitochondrial respiratory chain complex II assembly | 0.00E+00 |
| 4 | GO:0046294: formaldehyde catabolic process | 0.00E+00 |
| 5 | GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) | 0.00E+00 |
| 6 | GO:0044205: 'de novo' UMP biosynthetic process | 1.51E-05 |
| 7 | GO:0009902: chloroplast relocation | 1.51E-05 |
| 8 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 7.02E-05 |
| 9 | GO:0009231: riboflavin biosynthetic process | 9.09E-05 |
| 10 | GO:0080065: 4-alpha-methyl-delta7-sterol oxidation | 1.35E-04 |
| 11 | GO:0019354: siroheme biosynthetic process | 1.35E-04 |
| 12 | GO:1902265: abscisic acid homeostasis | 1.35E-04 |
| 13 | GO:0006007: glucose catabolic process | 1.35E-04 |
| 14 | GO:0000103: sulfate assimilation | 2.00E-04 |
| 15 | GO:0009853: photorespiration | 2.81E-04 |
| 16 | GO:0019388: galactose catabolic process | 3.11E-04 |
| 17 | GO:0007154: cell communication | 3.11E-04 |
| 18 | GO:0009220: pyrimidine ribonucleotide biosynthetic process | 3.11E-04 |
| 19 | GO:0080183: response to photooxidative stress | 3.11E-04 |
| 20 | GO:0043100: pyrimidine nucleobase salvage | 3.11E-04 |
| 21 | GO:0044419: interspecies interaction between organisms | 3.11E-04 |
| 22 | GO:1901562: response to paraquat | 5.13E-04 |
| 23 | GO:0071492: cellular response to UV-A | 5.13E-04 |
| 24 | GO:0044375: regulation of peroxisome size | 5.13E-04 |
| 25 | GO:0031022: nuclear migration along microfilament | 5.13E-04 |
| 26 | GO:0019419: sulfate reduction | 5.13E-04 |
| 27 | GO:0032981: mitochondrial respiratory chain complex I assembly | 7.34E-04 |
| 28 | GO:0009590: detection of gravity | 7.34E-04 |
| 29 | GO:0006241: CTP biosynthetic process | 7.34E-04 |
| 30 | GO:0009399: nitrogen fixation | 7.34E-04 |
| 31 | GO:0006165: nucleoside diphosphate phosphorylation | 7.34E-04 |
| 32 | GO:0006228: UTP biosynthetic process | 7.34E-04 |
| 33 | GO:0009963: positive regulation of flavonoid biosynthetic process | 7.34E-04 |
| 34 | GO:0009647: skotomorphogenesis | 7.34E-04 |
| 35 | GO:0080022: primary root development | 8.75E-04 |
| 36 | GO:0006520: cellular amino acid metabolic process | 9.40E-04 |
| 37 | GO:0034613: cellular protein localization | 9.73E-04 |
| 38 | GO:0006542: glutamine biosynthetic process | 9.73E-04 |
| 39 | GO:0070534: protein K63-linked ubiquitination | 9.73E-04 |
| 40 | GO:0071486: cellular response to high light intensity | 9.73E-04 |
| 41 | GO:0009765: photosynthesis, light harvesting | 9.73E-04 |
| 42 | GO:0006183: GTP biosynthetic process | 9.73E-04 |
| 43 | GO:0006221: pyrimidine nucleotide biosynthetic process | 9.73E-04 |
| 44 | GO:0009649: entrainment of circadian clock | 9.73E-04 |
| 45 | GO:0046283: anthocyanin-containing compound metabolic process | 1.23E-03 |
| 46 | GO:0010236: plastoquinone biosynthetic process | 1.23E-03 |
| 47 | GO:0016120: carotene biosynthetic process | 1.23E-03 |
| 48 | GO:0046686: response to cadmium ion | 1.30E-03 |
| 49 | GO:0009117: nucleotide metabolic process | 1.51E-03 |
| 50 | GO:0006121: mitochondrial electron transport, succinate to ubiquinone | 1.51E-03 |
| 51 | GO:0006301: postreplication repair | 1.51E-03 |
| 52 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 1.51E-03 |
| 53 | GO:0070814: hydrogen sulfide biosynthetic process | 1.51E-03 |
| 54 | GO:0006508: proteolysis | 1.51E-03 |
| 55 | GO:0006796: phosphate-containing compound metabolic process | 1.51E-03 |
| 56 | GO:0055114: oxidation-reduction process | 1.76E-03 |
| 57 | GO:0017148: negative regulation of translation | 1.81E-03 |
| 58 | GO:0009903: chloroplast avoidance movement | 1.81E-03 |
| 59 | GO:0006120: mitochondrial electron transport, NADH to ubiquinone | 1.81E-03 |
| 60 | GO:0022904: respiratory electron transport chain | 2.12E-03 |
| 61 | GO:0000105: histidine biosynthetic process | 2.46E-03 |
| 62 | GO:0016559: peroxisome fission | 2.46E-03 |
| 63 | GO:0005978: glycogen biosynthetic process | 2.46E-03 |
| 64 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 2.46E-03 |
| 65 | GO:0030091: protein repair | 2.46E-03 |
| 66 | GO:0006526: arginine biosynthetic process | 2.81E-03 |
| 67 | GO:0022900: electron transport chain | 2.81E-03 |
| 68 | GO:0015996: chlorophyll catabolic process | 2.81E-03 |
| 69 | GO:0009098: leucine biosynthetic process | 3.55E-03 |
| 70 | GO:0045036: protein targeting to chloroplast | 3.95E-03 |
| 71 | GO:0009641: shade avoidance | 3.95E-03 |
| 72 | GO:0009970: cellular response to sulfate starvation | 3.95E-03 |
| 73 | GO:0048229: gametophyte development | 4.36E-03 |
| 74 | GO:0005975: carbohydrate metabolic process | 4.60E-03 |
| 75 | GO:0009585: red, far-red light phototransduction | 4.66E-03 |
| 76 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.82E-03 |
| 77 | GO:0045454: cell redox homeostasis | 5.04E-03 |
| 78 | GO:0006006: glucose metabolic process | 5.22E-03 |
| 79 | GO:0050826: response to freezing | 5.22E-03 |
| 80 | GO:0009718: anthocyanin-containing compound biosynthetic process | 5.22E-03 |
| 81 | GO:0030048: actin filament-based movement | 5.22E-03 |
| 82 | GO:0007031: peroxisome organization | 6.14E-03 |
| 83 | GO:0051017: actin filament bundle assembly | 7.11E-03 |
| 84 | GO:0019344: cysteine biosynthetic process | 7.11E-03 |
| 85 | GO:0009116: nucleoside metabolic process | 7.11E-03 |
| 86 | GO:0008299: isoprenoid biosynthetic process | 7.62E-03 |
| 87 | GO:0019915: lipid storage | 8.14E-03 |
| 88 | GO:0009058: biosynthetic process | 8.74E-03 |
| 89 | GO:0009411: response to UV | 9.21E-03 |
| 90 | GO:0006012: galactose metabolic process | 9.21E-03 |
| 91 | GO:0009693: ethylene biosynthetic process | 9.21E-03 |
| 92 | GO:0016117: carotenoid biosynthetic process | 1.03E-02 |
| 93 | GO:0010118: stomatal movement | 1.09E-02 |
| 94 | GO:0042391: regulation of membrane potential | 1.09E-02 |
| 95 | GO:0006662: glycerol ether metabolic process | 1.15E-02 |
| 96 | GO:0015986: ATP synthesis coupled proton transport | 1.21E-02 |
| 97 | GO:0019252: starch biosynthetic process | 1.27E-02 |
| 98 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.34E-02 |
| 99 | GO:0019761: glucosinolate biosynthetic process | 1.40E-02 |
| 100 | GO:1901657: glycosyl compound metabolic process | 1.46E-02 |
| 101 | GO:0006464: cellular protein modification process | 1.53E-02 |
| 102 | GO:0016126: sterol biosynthetic process | 1.73E-02 |
| 103 | GO:0010029: regulation of seed germination | 1.80E-02 |
| 104 | GO:0042128: nitrate assimilation | 1.88E-02 |
| 105 | GO:0010411: xyloglucan metabolic process | 1.95E-02 |
| 106 | GO:0048573: photoperiodism, flowering | 1.95E-02 |
| 107 | GO:0016311: dephosphorylation | 2.02E-02 |
| 108 | GO:0080167: response to karrikin | 2.21E-02 |
| 109 | GO:0009407: toxin catabolic process | 2.24E-02 |
| 110 | GO:0010043: response to zinc ion | 2.32E-02 |
| 111 | GO:0007568: aging | 2.32E-02 |
| 112 | GO:0010119: regulation of stomatal movement | 2.32E-02 |
| 113 | GO:0009637: response to blue light | 2.48E-02 |
| 114 | GO:0034599: cellular response to oxidative stress | 2.56E-02 |
| 115 | GO:0006099: tricarboxylic acid cycle | 2.56E-02 |
| 116 | GO:0009640: photomorphogenesis | 2.97E-02 |
| 117 | GO:0009636: response to toxic substance | 3.23E-02 |
| 118 | GO:0010224: response to UV-B | 3.76E-02 |
| 119 | GO:0006096: glycolytic process | 4.13E-02 |
| 120 | GO:0009620: response to fungus | 4.42E-02 |
| 121 | GO:0009409: response to cold | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0018738: S-formylglutathione hydrolase activity | 0.00E+00 |
| 2 | GO:0004590: orotidine-5'-phosphate decarboxylase activity | 0.00E+00 |
| 3 | GO:0004399: histidinol dehydrogenase activity | 0.00E+00 |
| 4 | GO:0016852: sirohydrochlorin cobaltochelatase activity | 0.00E+00 |
| 5 | GO:0047501: (+)-neomenthol dehydrogenase activity | 0.00E+00 |
| 6 | GO:0045436: lycopene beta cyclase activity | 0.00E+00 |
| 7 | GO:0050486: intramolecular transferase activity, transferring hydroxy groups | 0.00E+00 |
| 8 | GO:0015205: nucleobase transmembrane transporter activity | 0.00E+00 |
| 9 | GO:0051266: sirohydrochlorin ferrochelatase activity | 0.00E+00 |
| 10 | GO:0004746: riboflavin synthase activity | 0.00E+00 |
| 11 | GO:0004151: dihydroorotase activity | 0.00E+00 |
| 12 | GO:0047504: (-)-menthol dehydrogenase activity | 0.00E+00 |
| 13 | GO:0003992: N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity | 0.00E+00 |
| 14 | GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity | 0.00E+00 |
| 15 | GO:0004588: orotate phosphoribosyltransferase activity | 0.00E+00 |
| 16 | GO:0008106: alcohol dehydrogenase (NADP+) activity | 8.07E-06 |
| 17 | GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity | 3.71E-05 |
| 18 | GO:0042802: identical protein binding | 4.15E-05 |
| 19 | GO:0016783: sulfurtransferase activity | 1.35E-04 |
| 20 | GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity | 1.35E-04 |
| 21 | GO:0016784: 3-mercaptopyruvate sulfurtransferase activity | 1.35E-04 |
| 22 | GO:0046480: galactolipid galactosyltransferase activity | 1.35E-04 |
| 23 | GO:0080079: cellobiose glucosidase activity | 1.35E-04 |
| 24 | GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity | 1.35E-04 |
| 25 | GO:0010313: phytochrome binding | 1.35E-04 |
| 26 | GO:0004614: phosphoglucomutase activity | 3.11E-04 |
| 27 | GO:0043425: bHLH transcription factor binding | 3.11E-04 |
| 28 | GO:0033741: adenylyl-sulfate reductase (glutathione) activity | 3.11E-04 |
| 29 | GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | 3.11E-04 |
| 30 | GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity | 3.11E-04 |
| 31 | GO:0050347: trans-octaprenyltranstransferase activity | 3.11E-04 |
| 32 | GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity | 3.11E-04 |
| 33 | GO:0004046: aminoacylase activity | 3.11E-04 |
| 34 | GO:0009973: adenylyl-sulfate reductase activity | 3.11E-04 |
| 35 | GO:0008967: phosphoglycolate phosphatase activity | 3.11E-04 |
| 36 | GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity | 3.11E-04 |
| 37 | GO:0004185: serine-type carboxypeptidase activity | 3.93E-04 |
| 38 | GO:0004781: sulfate adenylyltransferase (ATP) activity | 5.13E-04 |
| 39 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 5.13E-04 |
| 40 | GO:0003861: 3-isopropylmalate dehydratase activity | 5.13E-04 |
| 41 | GO:0003935: GTP cyclohydrolase II activity | 5.13E-04 |
| 42 | GO:0004792: thiosulfate sulfurtransferase activity | 7.34E-04 |
| 43 | GO:0004550: nucleoside diphosphate kinase activity | 7.34E-04 |
| 44 | GO:0000254: C-4 methylsterol oxidase activity | 7.34E-04 |
| 45 | GO:0048027: mRNA 5'-UTR binding | 7.34E-04 |
| 46 | GO:0035529: NADH pyrophosphatase activity | 7.34E-04 |
| 47 | GO:0008177: succinate dehydrogenase (ubiquinone) activity | 1.23E-03 |
| 48 | GO:0016651: oxidoreductase activity, acting on NAD(P)H | 1.23E-03 |
| 49 | GO:0004356: glutamate-ammonia ligase activity | 1.23E-03 |
| 50 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.30E-03 |
| 51 | GO:0030170: pyridoxal phosphate binding | 1.34E-03 |
| 52 | GO:0046872: metal ion binding | 1.36E-03 |
| 53 | GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity | 1.51E-03 |
| 54 | GO:0005261: cation channel activity | 1.81E-03 |
| 55 | GO:0008236: serine-type peptidase activity | 2.03E-03 |
| 56 | GO:0004427: inorganic diphosphatase activity | 2.12E-03 |
| 57 | GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity | 2.46E-03 |
| 58 | GO:0004034: aldose 1-epimerase activity | 2.46E-03 |
| 59 | GO:0050897: cobalt ion binding | 2.46E-03 |
| 60 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.07E-03 |
| 61 | GO:0016491: oxidoreductase activity | 3.59E-03 |
| 62 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.75E-03 |
| 63 | GO:0008378: galactosyltransferase activity | 4.79E-03 |
| 64 | GO:0004089: carbonate dehydratase activity | 5.22E-03 |
| 65 | GO:0031072: heat shock protein binding | 5.22E-03 |
| 66 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 5.68E-03 |
| 67 | GO:0030552: cAMP binding | 6.14E-03 |
| 68 | GO:0030553: cGMP binding | 6.14E-03 |
| 69 | GO:0015035: protein disulfide oxidoreductase activity | 6.82E-03 |
| 70 | GO:0051536: iron-sulfur cluster binding | 7.11E-03 |
| 71 | GO:0005216: ion channel activity | 7.62E-03 |
| 72 | GO:0004176: ATP-dependent peptidase activity | 8.14E-03 |
| 73 | GO:0047134: protein-disulfide reductase activity | 1.03E-02 |
| 74 | GO:0005249: voltage-gated potassium channel activity | 1.09E-02 |
| 75 | GO:0030551: cyclic nucleotide binding | 1.09E-02 |
| 76 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.15E-02 |
| 77 | GO:0004791: thioredoxin-disulfide reductase activity | 1.21E-02 |
| 78 | GO:0016853: isomerase activity | 1.21E-02 |
| 79 | GO:0048038: quinone binding | 1.34E-02 |
| 80 | GO:0004518: nuclease activity | 1.40E-02 |
| 81 | GO:0016791: phosphatase activity | 1.53E-02 |
| 82 | GO:0004672: protein kinase activity | 1.57E-02 |
| 83 | GO:0008483: transaminase activity | 1.60E-02 |
| 84 | GO:0008237: metallopeptidase activity | 1.60E-02 |
| 85 | GO:0016413: O-acetyltransferase activity | 1.66E-02 |
| 86 | GO:0000287: magnesium ion binding | 1.74E-02 |
| 87 | GO:0016168: chlorophyll binding | 1.80E-02 |
| 88 | GO:0016788: hydrolase activity, acting on ester bonds | 1.81E-02 |
| 89 | GO:0030247: polysaccharide binding | 1.95E-02 |
| 90 | GO:0005507: copper ion binding | 2.13E-02 |
| 91 | GO:0004222: metalloendopeptidase activity | 2.24E-02 |
| 92 | GO:0030145: manganese ion binding | 2.32E-02 |
| 93 | GO:0052689: carboxylic ester hydrolase activity | 2.44E-02 |
| 94 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 2.48E-02 |
| 95 | GO:0008422: beta-glucosidase activity | 2.64E-02 |
| 96 | GO:0004364: glutathione transferase activity | 2.88E-02 |
| 97 | GO:0051287: NAD binding | 3.40E-02 |
| 98 | GO:0009055: electron carrier activity | 3.49E-02 |
| 99 | GO:0016298: lipase activity | 3.76E-02 |
| 100 | GO:0031625: ubiquitin protein ligase binding | 3.95E-02 |
| 101 | GO:0008234: cysteine-type peptidase activity | 3.95E-02 |
| 102 | GO:0045735: nutrient reservoir activity | 4.13E-02 |
| 103 | GO:0051082: unfolded protein binding | 4.71E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 7.39E-11 |
| 2 | GO:0045271: respiratory chain complex I | 2.26E-05 |
| 3 | GO:0005747: mitochondrial respiratory chain complex I | 7.48E-05 |
| 4 | GO:0000152: nuclear ubiquitin ligase complex | 1.35E-04 |
| 5 | GO:0009536: plastid | 1.87E-04 |
| 6 | GO:0005829: cytosol | 2.85E-04 |
| 7 | GO:0009570: chloroplast stroma | 3.01E-04 |
| 8 | GO:0031966: mitochondrial membrane | 5.25E-04 |
| 9 | GO:0009526: plastid envelope | 9.73E-04 |
| 10 | GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) | 9.73E-04 |
| 11 | GO:0031372: UBC13-MMS2 complex | 9.73E-04 |
| 12 | GO:0010319: stromule | 1.47E-03 |
| 13 | GO:0031359: integral component of chloroplast outer membrane | 2.12E-03 |
| 14 | GO:0009501: amyloplast | 2.46E-03 |
| 15 | GO:0009535: chloroplast thylakoid membrane | 2.66E-03 |
| 16 | GO:0005779: integral component of peroxisomal membrane | 2.81E-03 |
| 17 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.17E-03 |
| 18 | GO:0016604: nuclear body | 3.55E-03 |
| 19 | GO:0005884: actin filament | 4.36E-03 |
| 20 | GO:0005773: vacuole | 4.97E-03 |
| 21 | GO:0005764: lysosome | 5.68E-03 |
| 22 | GO:0005753: mitochondrial proton-transporting ATP synthase complex | 6.14E-03 |
| 23 | GO:0005758: mitochondrial intermembrane space | 7.11E-03 |
| 24 | GO:0009941: chloroplast envelope | 1.13E-02 |
| 25 | GO:0009505: plant-type cell wall | 1.24E-02 |
| 26 | GO:0009523: photosystem II | 1.27E-02 |
| 27 | GO:0005739: mitochondrion | 1.34E-02 |
| 28 | GO:0005778: peroxisomal membrane | 1.60E-02 |
| 29 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 1.95E-02 |
| 30 | GO:0009707: chloroplast outer membrane | 2.09E-02 |
| 31 | GO:0031969: chloroplast membrane | 2.21E-02 |
| 32 | GO:0005783: endoplasmic reticulum | 2.41E-02 |
| 33 | GO:0005743: mitochondrial inner membrane | 3.03E-02 |
| 34 | GO:0009506: plasmodesma | 3.38E-02 |
| 35 | GO:0005834: heterotrimeric G-protein complex | 4.32E-02 |
| 36 | GO:0009706: chloroplast inner membrane | 4.71E-02 |