GO Enrichment Analysis of Co-expressed Genes with
AT1G52930
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1990258: histone glutamine methylation | 0.00E+00 |
| 2 | GO:0051050: positive regulation of transport | 0.00E+00 |
| 3 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 4 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 5 | GO:0000494: box C/D snoRNA 3'-end processing | 0.00E+00 |
| 6 | GO:1904874: positive regulation of telomerase RNA localization to Cajal body | 0.00E+00 |
| 7 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 8 | GO:0006412: translation | 1.31E-60 |
| 9 | GO:0042254: ribosome biogenesis | 2.04E-24 |
| 10 | GO:0006626: protein targeting to mitochondrion | 1.02E-08 |
| 11 | GO:0006364: rRNA processing | 5.06E-08 |
| 12 | GO:0048569: post-embryonic animal organ development | 2.91E-06 |
| 13 | GO:0009967: positive regulation of signal transduction | 2.91E-06 |
| 14 | GO:0042256: mature ribosome assembly | 1.05E-05 |
| 15 | GO:0010162: seed dormancy process | 1.82E-05 |
| 16 | GO:0042273: ribosomal large subunit biogenesis | 4.33E-05 |
| 17 | GO:0031167: rRNA methylation | 6.89E-05 |
| 18 | GO:0000470: maturation of LSU-rRNA | 1.01E-04 |
| 19 | GO:0007005: mitochondrion organization | 1.15E-04 |
| 20 | GO:0071215: cellular response to abscisic acid stimulus | 1.31E-04 |
| 21 | GO:0006458: 'de novo' protein folding | 1.39E-04 |
| 22 | GO:0009955: adaxial/abaxial pattern specification | 1.39E-04 |
| 23 | GO:0010197: polar nucleus fusion | 2.06E-04 |
| 24 | GO:0000028: ribosomal small subunit assembly | 2.32E-04 |
| 25 | GO:0006169: adenosine salvage | 2.51E-04 |
| 26 | GO:0006407: rRNA export from nucleus | 2.51E-04 |
| 27 | GO:0031120: snRNA pseudouridine synthesis | 2.51E-04 |
| 28 | GO:0000469: cleavage involved in rRNA processing | 2.51E-04 |
| 29 | GO:0031118: rRNA pseudouridine synthesis | 2.51E-04 |
| 30 | GO:0035266: meristem growth | 2.51E-04 |
| 31 | GO:0030490: maturation of SSU-rRNA | 2.51E-04 |
| 32 | GO:0006177: GMP biosynthetic process | 2.51E-04 |
| 33 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.51E-04 |
| 34 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.51E-04 |
| 35 | GO:0001510: RNA methylation | 2.86E-04 |
| 36 | GO:0009220: pyrimidine ribonucleotide biosynthetic process | 5.53E-04 |
| 37 | GO:2000072: regulation of defense response to fungus, incompatible interaction | 5.53E-04 |
| 38 | GO:0045041: protein import into mitochondrial intermembrane space | 5.53E-04 |
| 39 | GO:1902626: assembly of large subunit precursor of preribosome | 8.99E-04 |
| 40 | GO:0010476: gibberellin mediated signaling pathway | 8.99E-04 |
| 41 | GO:0045039: protein import into mitochondrial inner membrane | 8.99E-04 |
| 42 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.11E-03 |
| 43 | GO:0000027: ribosomal large subunit assembly | 1.11E-03 |
| 44 | GO:0030150: protein import into mitochondrial matrix | 1.11E-03 |
| 45 | GO:0009855: determination of bilateral symmetry | 1.28E-03 |
| 46 | GO:0051131: chaperone-mediated protein complex assembly | 1.28E-03 |
| 47 | GO:0006383: transcription from RNA polymerase III promoter | 1.28E-03 |
| 48 | GO:0007004: telomere maintenance via telomerase | 1.28E-03 |
| 49 | GO:0006164: purine nucleotide biosynthetic process | 1.28E-03 |
| 50 | GO:0006334: nucleosome assembly | 1.34E-03 |
| 51 | GO:0061077: chaperone-mediated protein folding | 1.34E-03 |
| 52 | GO:0009294: DNA mediated transformation | 1.59E-03 |
| 53 | GO:0000460: maturation of 5.8S rRNA | 1.71E-03 |
| 54 | GO:0044205: 'de novo' UMP biosynthetic process | 1.71E-03 |
| 55 | GO:1900864: mitochondrial RNA modification | 1.71E-03 |
| 56 | GO:0008033: tRNA processing | 2.02E-03 |
| 57 | GO:0044209: AMP salvage | 2.19E-03 |
| 58 | GO:0009553: embryo sac development | 2.55E-03 |
| 59 | GO:0080156: mitochondrial mRNA modification | 2.68E-03 |
| 60 | GO:0000741: karyogamy | 2.70E-03 |
| 61 | GO:0001731: formation of translation preinitiation complex | 2.70E-03 |
| 62 | GO:0016070: RNA metabolic process | 2.70E-03 |
| 63 | GO:0016554: cytidine to uridine editing | 2.70E-03 |
| 64 | GO:0000398: mRNA splicing, via spliceosome | 3.17E-03 |
| 65 | GO:0000054: ribosomal subunit export from nucleus | 3.24E-03 |
| 66 | GO:0000245: spliceosomal complex assembly | 3.24E-03 |
| 67 | GO:0016444: somatic cell DNA recombination | 3.24E-03 |
| 68 | GO:0042026: protein refolding | 3.24E-03 |
| 69 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 3.82E-03 |
| 70 | GO:0080186: developmental vegetative growth | 3.82E-03 |
| 71 | GO:0001522: pseudouridine synthesis | 4.44E-03 |
| 72 | GO:0035265: organ growth | 4.44E-03 |
| 73 | GO:0001558: regulation of cell growth | 5.08E-03 |
| 74 | GO:0010311: lateral root formation | 5.30E-03 |
| 75 | GO:0006189: 'de novo' IMP biosynthetic process | 5.75E-03 |
| 76 | GO:0007338: single fertilization | 5.75E-03 |
| 77 | GO:0048507: meristem development | 5.75E-03 |
| 78 | GO:0006414: translational elongation | 6.03E-03 |
| 79 | GO:0010449: root meristem growth | 6.46E-03 |
| 80 | GO:0000387: spliceosomal snRNP assembly | 6.46E-03 |
| 81 | GO:1900865: chloroplast RNA modification | 6.46E-03 |
| 82 | GO:0030422: production of siRNA involved in RNA interference | 7.20E-03 |
| 83 | GO:0006259: DNA metabolic process | 7.20E-03 |
| 84 | GO:0010015: root morphogenesis | 7.96E-03 |
| 85 | GO:0006913: nucleocytoplasmic transport | 7.96E-03 |
| 86 | GO:0008283: cell proliferation | 8.24E-03 |
| 87 | GO:0006820: anion transport | 8.75E-03 |
| 88 | GO:2000012: regulation of auxin polar transport | 9.57E-03 |
| 89 | GO:0009735: response to cytokinin | 9.94E-03 |
| 90 | GO:0006446: regulation of translational initiation | 1.04E-02 |
| 91 | GO:0010073: meristem maintenance | 1.41E-02 |
| 92 | GO:0051302: regulation of cell division | 1.41E-02 |
| 93 | GO:0016569: covalent chromatin modification | 1.50E-02 |
| 94 | GO:0015031: protein transport | 1.55E-02 |
| 95 | GO:0006457: protein folding | 1.68E-02 |
| 96 | GO:0042127: regulation of cell proliferation | 1.81E-02 |
| 97 | GO:0000413: protein peptidyl-prolyl isomerization | 2.02E-02 |
| 98 | GO:0010305: leaf vascular tissue pattern formation | 2.14E-02 |
| 99 | GO:0009960: endosperm development | 2.14E-02 |
| 100 | GO:0009845: seed germination | 2.15E-02 |
| 101 | GO:0046686: response to cadmium ion | 2.20E-02 |
| 102 | GO:0009749: response to glucose | 2.36E-02 |
| 103 | GO:0006635: fatty acid beta-oxidation | 2.48E-02 |
| 104 | GO:0016032: viral process | 2.60E-02 |
| 105 | GO:0009451: RNA modification | 2.81E-02 |
| 106 | GO:0009567: double fertilization forming a zygote and endosperm | 2.85E-02 |
| 107 | GO:0016049: cell growth | 3.76E-02 |
| 108 | GO:0006811: ion transport | 4.18E-02 |
| 109 | GO:0048527: lateral root development | 4.32E-02 |
| 110 | GO:0000724: double-strand break repair via homologous recombination | 4.46E-02 |
| 111 | GO:0006099: tricarboxylic acid cycle | 4.76E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004152: dihydroorotate dehydrogenase activity | 0.00E+00 |
| 2 | GO:1990259: histone-glutamine methyltransferase activity | 0.00E+00 |
| 3 | GO:0050355: triphosphatase activity | 0.00E+00 |
| 4 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 5 | GO:0034513: box H/ACA snoRNA binding | 0.00E+00 |
| 6 | GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity | 0.00E+00 |
| 7 | GO:0003735: structural constituent of ribosome | 5.04E-73 |
| 8 | GO:0019843: rRNA binding | 9.16E-13 |
| 9 | GO:0003723: RNA binding | 4.52E-11 |
| 10 | GO:0030515: snoRNA binding | 1.25E-10 |
| 11 | GO:0044183: protein binding involved in protein folding | 4.08E-07 |
| 12 | GO:0003729: mRNA binding | 1.03E-06 |
| 13 | GO:0005078: MAP-kinase scaffold activity | 2.91E-06 |
| 14 | GO:0008649: rRNA methyltransferase activity | 1.05E-05 |
| 15 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 5.86E-05 |
| 16 | GO:0004407: histone deacetylase activity | 7.44E-05 |
| 17 | GO:0003746: translation elongation factor activity | 9.14E-05 |
| 18 | GO:0000166: nucleotide binding | 1.74E-04 |
| 19 | GO:0004001: adenosine kinase activity | 2.51E-04 |
| 20 | GO:0048037: cofactor binding | 2.51E-04 |
| 21 | GO:0042134: rRNA primary transcript binding | 2.51E-04 |
| 22 | GO:0001055: RNA polymerase II activity | 4.10E-04 |
| 23 | GO:0043141: ATP-dependent 5'-3' DNA helicase activity | 5.53E-04 |
| 24 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 5.53E-04 |
| 25 | GO:0003938: IMP dehydrogenase activity | 5.53E-04 |
| 26 | GO:0070034: telomerase RNA binding | 5.53E-04 |
| 27 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 5.53E-04 |
| 28 | GO:0001054: RNA polymerase I activity | 5.54E-04 |
| 29 | GO:0001056: RNA polymerase III activity | 6.33E-04 |
| 30 | GO:0050897: cobalt ion binding | 7.57E-04 |
| 31 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 8.99E-04 |
| 32 | GO:0032947: protein complex scaffold | 8.99E-04 |
| 33 | GO:0043023: ribosomal large subunit binding | 1.28E-03 |
| 34 | GO:0008097: 5S rRNA binding | 1.28E-03 |
| 35 | GO:0005507: copper ion binding | 1.53E-03 |
| 36 | GO:0051082: unfolded protein binding | 2.65E-03 |
| 37 | GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity | 2.70E-03 |
| 38 | GO:0031369: translation initiation factor binding | 2.70E-03 |
| 39 | GO:0008235: metalloexopeptidase activity | 3.82E-03 |
| 40 | GO:0043022: ribosome binding | 4.44E-03 |
| 41 | GO:0015288: porin activity | 4.44E-03 |
| 42 | GO:0008308: voltage-gated anion channel activity | 5.08E-03 |
| 43 | GO:0003678: DNA helicase activity | 5.75E-03 |
| 44 | GO:0042393: histone binding | 7.28E-03 |
| 45 | GO:0000049: tRNA binding | 8.75E-03 |
| 46 | GO:0015266: protein channel activity | 9.57E-03 |
| 47 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 9.62E-03 |
| 48 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.11E-02 |
| 49 | GO:0005528: FK506 binding | 1.31E-02 |
| 50 | GO:0051087: chaperone binding | 1.41E-02 |
| 51 | GO:0008026: ATP-dependent helicase activity | 1.68E-02 |
| 52 | GO:0003743: translation initiation factor activity | 3.21E-02 |
| 53 | GO:0004004: ATP-dependent RNA helicase activity | 3.62E-02 |
| 54 | GO:0003697: single-stranded DNA binding | 4.61E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005832: chaperonin-containing T-complex | 0.00E+00 |
| 2 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 3 | GO:0090661: box H/ACA telomerase RNP complex | 0.00E+00 |
| 4 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 5 | GO:0072589: box H/ACA scaRNP complex | 0.00E+00 |
| 6 | GO:0005840: ribosome | 1.01E-44 |
| 7 | GO:0022625: cytosolic large ribosomal subunit | 2.75E-42 |
| 8 | GO:0022626: cytosolic ribosome | 2.93E-36 |
| 9 | GO:0005730: nucleolus | 2.09E-33 |
| 10 | GO:0022627: cytosolic small ribosomal subunit | 2.15E-30 |
| 11 | GO:0005829: cytosol | 1.18E-13 |
| 12 | GO:0015934: large ribosomal subunit | 2.35E-12 |
| 13 | GO:0032040: small-subunit processome | 6.85E-09 |
| 14 | GO:0005737: cytoplasm | 5.51E-08 |
| 15 | GO:0015030: Cajal body | 1.92E-07 |
| 16 | GO:0009506: plasmodesma | 7.86E-07 |
| 17 | GO:0005773: vacuole | 9.15E-07 |
| 18 | GO:0031428: box C/D snoRNP complex | 1.17E-06 |
| 19 | GO:0015935: small ribosomal subunit | 3.50E-06 |
| 20 | GO:0005774: vacuolar membrane | 1.21E-05 |
| 21 | GO:0005758: mitochondrial intermembrane space | 7.44E-05 |
| 22 | GO:0030687: preribosome, large subunit precursor | 1.82E-04 |
| 23 | GO:0005743: mitochondrial inner membrane | 1.98E-04 |
| 24 | GO:0030686: 90S preribosome | 2.51E-04 |
| 25 | GO:0005742: mitochondrial outer membrane translocase complex | 2.86E-04 |
| 26 | GO:0005618: cell wall | 3.18E-04 |
| 27 | GO:0005747: mitochondrial respiratory chain complex I | 3.33E-04 |
| 28 | GO:0005736: DNA-directed RNA polymerase I complex | 3.46E-04 |
| 29 | GO:0005666: DNA-directed RNA polymerase III complex | 4.10E-04 |
| 30 | GO:0000418: DNA-directed RNA polymerase IV complex | 4.80E-04 |
| 31 | GO:0005732: small nucleolar ribonucleoprotein complex | 4.88E-04 |
| 32 | GO:0071010: prespliceosome | 5.53E-04 |
| 33 | GO:0005665: DNA-directed RNA polymerase II, core complex | 6.33E-04 |
| 34 | GO:0019013: viral nucleocapsid | 7.18E-04 |
| 35 | GO:0034715: pICln-Sm protein complex | 8.99E-04 |
| 36 | GO:0034719: SMN-Sm protein complex | 8.99E-04 |
| 37 | GO:0005853: eukaryotic translation elongation factor 1 complex | 8.99E-04 |
| 38 | GO:0031429: box H/ACA snoRNP complex | 1.28E-03 |
| 39 | GO:0005739: mitochondrion | 1.38E-03 |
| 40 | GO:0005682: U5 snRNP | 1.71E-03 |
| 41 | GO:0005687: U4 snRNP | 2.19E-03 |
| 42 | GO:0097526: spliceosomal tri-snRNP complex | 2.19E-03 |
| 43 | GO:0005834: heterotrimeric G-protein complex | 2.27E-03 |
| 44 | GO:0016282: eukaryotic 43S preinitiation complex | 2.70E-03 |
| 45 | GO:0000243: commitment complex | 2.70E-03 |
| 46 | GO:0033290: eukaryotic 48S preinitiation complex | 3.24E-03 |
| 47 | GO:0005689: U12-type spliceosomal complex | 3.24E-03 |
| 48 | GO:0016272: prefoldin complex | 3.24E-03 |
| 49 | GO:0016363: nuclear matrix | 3.24E-03 |
| 50 | GO:0034399: nuclear periphery | 4.44E-03 |
| 51 | GO:0005688: U6 snRNP | 4.44E-03 |
| 52 | GO:0009507: chloroplast | 4.87E-03 |
| 53 | GO:0046930: pore complex | 5.08E-03 |
| 54 | GO:0046540: U4/U6 x U5 tri-snRNP complex | 5.08E-03 |
| 55 | GO:0005685: U1 snRNP | 5.75E-03 |
| 56 | GO:0071011: precatalytic spliceosome | 6.46E-03 |
| 57 | GO:0016604: nuclear body | 6.46E-03 |
| 58 | GO:0005686: U2 snRNP | 7.20E-03 |
| 59 | GO:0071013: catalytic step 2 spliceosome | 7.96E-03 |
| 60 | GO:0005852: eukaryotic translation initiation factor 3 complex | 7.96E-03 |
| 61 | GO:0000419: DNA-directed RNA polymerase V complex | 1.22E-02 |
| 62 | GO:0005681: spliceosomal complex | 1.32E-02 |
| 63 | GO:0005741: mitochondrial outer membrane | 1.50E-02 |
| 64 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 1.81E-02 |
| 65 | GO:0005759: mitochondrial matrix | 2.50E-02 |
| 66 | GO:0016592: mediator complex | 2.60E-02 |
| 67 | GO:0016020: membrane | 2.66E-02 |
| 68 | GO:0030529: intracellular ribonucleoprotein complex | 3.23E-02 |
| 69 | GO:0009536: plastid | 4.37E-02 |
| 70 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 4.65E-02 |