co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G52890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009268: response to pH	0.00E+00
2	GO:0080169: cellular response to boron-containing substance deprivation	0.00E+00
3	GO:1900067: regulation of cellular response to alkaline pH	0.00E+00
4	GO:0097237: cellular response to toxic substance	0.00E+00
5	GO:0061416: regulation of transcription from RNA polymerase II promoter in response to salt stress	0.00E+00
6	GO:0009611: response to wounding	5.66E-09
7	GO:0045227: capsule polysaccharide biosynthetic process	1.68E-08
8	GO:0033358: UDP-L-arabinose biosynthetic process	1.68E-08
9	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	1.47E-06
10	GO:0009225: nucleotide-sugar metabolic process	4.47E-06
11	GO:0006012: galactose metabolic process	1.25E-05
12	GO:0055085: transmembrane transport	4.18E-05
13	GO:0009753: response to jasmonic acid	6.83E-05
14	GO:0009835: fruit ripening	6.88E-05
15	GO:0007229: integrin-mediated signaling pathway	8.43E-05
16	GO:0019567: arabinose biosynthetic process	8.43E-05
17	GO:1903507: negative regulation of nucleic acid-templated transcription	1.18E-04
18	GO:0015706: nitrate transport	1.37E-04
19	GO:0009737: response to abscisic acid	1.43E-04
20	GO:0015865: purine nucleotide transport	2.00E-04
21	GO:0050688: regulation of defense response to virus	2.00E-04
22	GO:0009446: putrescine biosynthetic process	2.00E-04
23	GO:0006527: arginine catabolic process	2.00E-04
24	GO:0009812: flavonoid metabolic process	2.00E-04
25	GO:0048480: stigma development	2.00E-04
26	GO:0090351: seedling development	2.04E-04
27	GO:0009901: anther dehiscence	2.04E-04
28	GO:0010581: regulation of starch biosynthetic process	3.35E-04
29	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.42E-04
30	GO:0009693: ethylene biosynthetic process	3.73E-04
31	GO:0009651: response to salt stress	4.30E-04
32	GO:0048653: anther development	4.74E-04
33	GO:0080024: indolebutyric acid metabolic process	4.84E-04
34	GO:0046836: glycolipid transport	4.84E-04
35	GO:0006571: tyrosine biosynthetic process	4.84E-04
36	GO:0046902: regulation of mitochondrial membrane permeability	4.84E-04
37	GO:0009694: jasmonic acid metabolic process	6.44E-04
38	GO:0008295: spermidine biosynthetic process	6.44E-04
39	GO:0034440: lipid oxidation	6.44E-04
40	GO:0015867: ATP transport	6.44E-04
41	GO:0030041: actin filament polymerization	8.14E-04
42	GO:0032957: inositol trisphosphate metabolic process	8.14E-04
43	GO:0042128: nitrate assimilation	9.88E-04
44	GO:0033365: protein localization to organelle	9.94E-04
45	GO:0006596: polyamine biosynthetic process	9.94E-04
46	GO:0015866: ADP transport	9.94E-04
47	GO:0048317: seed morphogenesis	9.94E-04
48	GO:0046855: inositol phosphate dephosphorylation	9.94E-04
49	GO:0009555: pollen development	1.13E-03
50	GO:0080086: stamen filament development	1.18E-03
51	GO:0009832: plant-type cell wall biogenesis	1.20E-03
52	GO:0009407: toxin catabolic process	1.26E-03
53	GO:0071669: plant-type cell wall organization or biogenesis	1.39E-03
54	GO:0045010: actin nucleation	1.60E-03
55	GO:0006839: mitochondrial transport	1.63E-03
56	GO:0080167: response to karrikin	1.78E-03
57	GO:0009699: phenylpropanoid biosynthetic process	1.83E-03
58	GO:0010112: regulation of systemic acquired resistance	2.06E-03
59	GO:0009636: response to toxic substance	2.07E-03
60	GO:0009086: methionine biosynthetic process	2.30E-03
61	GO:0010215: cellulose microfibril organization	2.56E-03
62	GO:0072593: reactive oxygen species metabolic process	2.82E-03
63	GO:0046856: phosphatidylinositol dephosphorylation	2.82E-03
64	GO:0015770: sucrose transport	2.82E-03
65	GO:0010105: negative regulation of ethylene-activated signaling pathway	3.09E-03
66	GO:0000266: mitochondrial fission	3.09E-03
67	GO:0002213: defense response to insect	3.09E-03
68	GO:0008152: metabolic process	3.29E-03
69	GO:0018107: peptidyl-threonine phosphorylation	3.37E-03
70	GO:0034605: cellular response to heat	3.66E-03
71	GO:0005985: sucrose metabolic process	3.95E-03
72	GO:0009873: ethylene-activated signaling pathway	4.01E-03
73	GO:0000027: ribosomal large subunit assembly	4.57E-03
74	GO:0009695: jasmonic acid biosynthetic process	4.89E-03
75	GO:0031408: oxylipin biosynthetic process	5.22E-03
76	GO:0016036: cellular response to phosphate starvation	5.61E-03
77	GO:0040007: growth	5.89E-03
78	GO:0006470: protein dephosphorylation	6.87E-03
79	GO:0000271: polysaccharide biosynthetic process	6.97E-03
80	GO:0048868: pollen tube development	7.34E-03
81	GO:0009960: endosperm development	7.34E-03
82	GO:0010154: fruit development	7.34E-03
83	GO:0006814: sodium ion transport	7.72E-03
84	GO:0006635: fatty acid beta-oxidation	8.50E-03
85	GO:0032502: developmental process	8.90E-03
86	GO:0006970: response to osmotic stress	1.00E-02
87	GO:0016579: protein deubiquitination	1.06E-02
88	GO:0001666: response to hypoxia	1.10E-02
89	GO:0009607: response to biotic stimulus	1.14E-02
90	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.14E-02
91	GO:0010200: response to chitin	1.20E-02
92	GO:0016049: cell growth	1.28E-02
93	GO:0030244: cellulose biosynthetic process	1.33E-02
94	GO:0008219: cell death	1.33E-02
95	GO:0048767: root hair elongation	1.37E-02
96	GO:0009813: flavonoid biosynthetic process	1.37E-02
97	GO:0009414: response to water deprivation	1.43E-02
98	GO:0009867: jasmonic acid mediated signaling pathway	1.57E-02
99	GO:0009751: response to salicylic acid	1.69E-02
100	GO:0009644: response to high light intensity	1.99E-02
101	GO:0031347: regulation of defense response	2.15E-02
102	GO:0009409: response to cold	2.16E-02
103	GO:0006812: cation transport	2.21E-02
104	GO:0009809: lignin biosynthetic process	2.32E-02
105	GO:0006813: potassium ion transport	2.32E-02
106	GO:0010224: response to UV-B	2.38E-02
107	GO:0006810: transport	2.39E-02
108	GO:0048316: seed development	2.68E-02
109	GO:0009620: response to fungus	2.80E-02
110	GO:0018105: peptidyl-serine phosphorylation	3.05E-02
111	GO:0009742: brassinosteroid mediated signaling pathway	3.11E-02
112	GO:0045893: positive regulation of transcription, DNA-templated	3.48E-02
113	GO:0009845: seed germination	3.70E-02
114	GO:0006952: defense response	4.27E-02
115	GO:0055114: oxidation-reduction process	4.83E-02
116	GO:0007166: cell surface receptor signaling pathway	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0052694: jasmonoyl-isoleucine-12-hydroxylase activity	0.00E+00
2	GO:0050373: UDP-arabinose 4-epimerase activity	1.68E-08
3	GO:0003978: UDP-glucose 4-epimerase activity	1.35E-07
4	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	4.35E-05
5	GO:0015112: nitrate transmembrane transporter activity	8.37E-05
6	GO:0033730: arogenate dehydrogenase (NADP+) activity	8.43E-05
7	GO:0047150: betaine-homocysteine S-methyltransferase activity	8.43E-05
8	GO:0008792: arginine decarboxylase activity	8.43E-05
9	GO:0004665: prephenate dehydrogenase (NADP+) activity	8.43E-05
10	GO:0008977: prephenate dehydrogenase (NAD+) activity	8.43E-05
11	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	2.00E-04
12	GO:0050403: trans-zeatin O-beta-D-glucosyltransferase activity	2.00E-04
13	GO:0050502: cis-zeatin O-beta-D-glucosyltransferase activity	2.00E-04
14	GO:0003714: transcription corepressor activity	2.55E-04
15	GO:0016165: linoleate 13S-lipoxygenase activity	3.35E-04
16	GO:0052659: inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity	3.35E-04
17	GO:0051740: ethylene binding	4.84E-04
18	GO:0052658: inositol-1,4,5-trisphosphate 5-phosphatase activity	4.84E-04
19	GO:0017089: glycolipid transporter activity	4.84E-04
20	GO:0004445: inositol-polyphosphate 5-phosphatase activity	4.84E-04
21	GO:0005432: calcium:sodium antiporter activity	4.84E-04
22	GO:0051861: glycolipid binding	6.44E-04
23	GO:0015297: antiporter activity	7.48E-04
24	GO:0005471: ATP:ADP antiporter activity	8.14E-04
25	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	9.94E-04
26	GO:0051753: mannan synthase activity	1.18E-03
27	GO:0005347: ATP transmembrane transporter activity	1.18E-03
28	GO:0015217: ADP transmembrane transporter activity	1.18E-03
29	GO:0003950: NAD+ ADP-ribosyltransferase activity	1.18E-03
30	GO:0008506: sucrose:proton symporter activity	1.39E-03
31	GO:0052747: sinapyl alcohol dehydrogenase activity	1.60E-03
32	GO:0015491: cation:cation antiporter activity	1.60E-03
33	GO:0004364: glutathione transferase activity	1.77E-03
34	GO:0016207: 4-coumarate-CoA ligase activity	2.06E-03
35	GO:0047617: acyl-CoA hydrolase activity	2.30E-03
36	GO:0004673: protein histidine kinase activity	2.56E-03
37	GO:0015020: glucuronosyltransferase activity	2.56E-03
38	GO:0008515: sucrose transmembrane transporter activity	2.82E-03
39	GO:0045551: cinnamyl-alcohol dehydrogenase activity	3.09E-03
40	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	3.09E-03
41	GO:0000155: phosphorelay sensor kinase activity	3.37E-03
42	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.66E-03
43	GO:0016758: transferase activity, transferring hexosyl groups	4.25E-03
44	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.48E-03
45	GO:0001046: core promoter sequence-specific DNA binding	4.57E-03
46	GO:0030170: pyridoxal phosphate binding	4.84E-03
47	GO:0016760: cellulose synthase (UDP-forming) activity	5.89E-03
48	GO:0008194: UDP-glycosyltransferase activity	6.72E-03
49	GO:0016853: isomerase activity	7.72E-03
50	GO:0004872: receptor activity	8.10E-03
51	GO:0004843: thiol-dependent ubiquitin-specific protease activity	8.50E-03
52	GO:0016759: cellulose synthase activity	9.72E-03
53	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.01E-02
54	GO:0051213: dioxygenase activity	1.10E-02
55	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.47E-02
56	GO:0004722: protein serine/threonine phosphatase activity	1.52E-02
57	GO:0003824: catalytic activity	1.66E-02
58	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.67E-02
59	GO:0015293: symporter activity	2.04E-02
60	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.80E-02
61	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.80E-02
62	GO:0016874: ligase activity	2.86E-02
63	GO:0003779: actin binding	2.92E-02
64	GO:0015144: carbohydrate transmembrane transporter activity	3.98E-02
65	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.00E-02
66	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.19E-02
67	GO:0019825: oxygen binding	4.31E-02
68	GO:0005351: sugar:proton symporter activity	4.33E-02
69	GO:0005516: calmodulin binding	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0032580: Golgi cisterna membrane	4.09E-05
2	GO:0030173: integral component of Golgi membrane	1.18E-03
3	GO:0016363: nuclear matrix	1.18E-03
4	GO:0005779: integral component of peroxisomal membrane	1.83E-03
5	GO:0005740: mitochondrial envelope	2.56E-03
6	GO:0005743: mitochondrial inner membrane	2.65E-03
7	GO:0090404: pollen tube tip	2.82E-03
8	GO:0005741: mitochondrial outer membrane	5.22E-03
9	GO:0005774: vacuolar membrane	6.23E-03
10	GO:0005737: cytoplasm	7.21E-03
11	GO:0005794: Golgi apparatus	1.63E-02
12	GO:0090406: pollen tube	1.88E-02
13	GO:0005886: plasma membrane	3.27E-02
14	GO:0009524: phragmoplast	3.64E-02
15	GO:0031225: anchored component of membrane	4.71E-02
16	GO:0005802: trans-Golgi network	4.84E-02