co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G52600

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0001881: receptor recycling	0.00E+00
2	GO:0006592: ornithine biosynthetic process	0.00E+00
3	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
4	GO:0045047: protein targeting to ER	0.00E+00
5	GO:0030970: retrograde protein transport, ER to cytosol	0.00E+00
6	GO:0019428: allantoin biosynthetic process	0.00E+00
7	GO:0006721: terpenoid metabolic process	0.00E+00
8	GO:0019307: mannose biosynthetic process	0.00E+00
9	GO:1901799: negative regulation of proteasomal protein catabolic process	0.00E+00
10	GO:0006489: dolichyl diphosphate biosynthetic process	0.00E+00
11	GO:0006511: ubiquitin-dependent protein catabolic process	5.07E-17
12	GO:0051603: proteolysis involved in cellular protein catabolic process	1.44E-07
13	GO:0034976: response to endoplasmic reticulum stress	3.10E-06
14	GO:0006487: protein N-linked glycosylation	3.93E-06
15	GO:0006412: translation	1.88E-05
16	GO:0046686: response to cadmium ion	1.22E-04
17	GO:0043248: proteasome assembly	1.34E-04
18	GO:0045454: cell redox homeostasis	2.59E-04
19	GO:0001560: regulation of cell growth by extracellular stimulus	2.99E-04
20	GO:0019628: urate catabolic process	2.99E-04
21	GO:0016487: farnesol metabolic process	2.99E-04
22	GO:0009240: isopentenyl diphosphate biosynthetic process	2.99E-04
23	GO:0010265: SCF complex assembly	2.99E-04
24	GO:0006144: purine nucleobase metabolic process	2.99E-04
25	GO:0045901: positive regulation of translational elongation	6.55E-04
26	GO:0006452: translational frameshifting	6.55E-04
27	GO:0015786: UDP-glucose transport	6.55E-04
28	GO:0051788: response to misfolded protein	6.55E-04
29	GO:0006432: phenylalanyl-tRNA aminoacylation	6.55E-04
30	GO:0045905: positive regulation of translational termination	6.55E-04
31	GO:0050992: dimethylallyl diphosphate biosynthetic process	6.55E-04
32	GO:0016925: protein sumoylation	8.12E-04
33	GO:0010043: response to zinc ion	1.04E-03
34	GO:0015783: GDP-fucose transport	1.06E-03
35	GO:0034227: tRNA thio-modification	1.06E-03
36	GO:0046168: glycerol-3-phosphate catabolic process	1.06E-03
37	GO:1902626: assembly of large subunit precursor of preribosome	1.06E-03
38	GO:0008333: endosome to lysosome transport	1.06E-03
39	GO:0006013: mannose metabolic process	1.06E-03
40	GO:0055074: calcium ion homeostasis	1.06E-03
41	GO:0002181: cytoplasmic translation	1.06E-03
42	GO:0045793: positive regulation of cell size	1.06E-03
43	GO:0009298: GDP-mannose biosynthetic process	1.52E-03
44	GO:0006166: purine ribonucleoside salvage	1.52E-03
45	GO:0006107: oxaloacetate metabolic process	1.52E-03
46	GO:0072334: UDP-galactose transmembrane transport	1.52E-03
47	GO:0010971: positive regulation of G2/M transition of mitotic cell cycle	1.52E-03
48	GO:0006072: glycerol-3-phosphate metabolic process	1.52E-03
49	GO:0009647: skotomorphogenesis	1.52E-03
50	GO:0009113: purine nucleobase biosynthetic process	1.52E-03
51	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.52E-03
52	GO:1901332: negative regulation of lateral root development	1.52E-03
53	GO:0006164: purine nucleotide biosynthetic process	1.52E-03
54	GO:0006168: adenine salvage	1.52E-03
55	GO:0051289: protein homotetramerization	1.52E-03
56	GO:0006882: cellular zinc ion homeostasis	1.52E-03
57	GO:0001676: long-chain fatty acid metabolic process	1.52E-03
58	GO:0032877: positive regulation of DNA endoreduplication	1.52E-03
59	GO:0046836: glycolipid transport	1.52E-03
60	GO:0061077: chaperone-mediated protein folding	1.72E-03
61	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.72E-03
62	GO:0015992: proton transport	1.72E-03
63	GO:0030433: ubiquitin-dependent ERAD pathway	1.88E-03
64	GO:0051781: positive regulation of cell division	2.04E-03
65	GO:0010387: COP9 signalosome assembly	2.04E-03
66	GO:0010363: regulation of plant-type hypersensitive response	2.04E-03
67	GO:0032366: intracellular sterol transport	2.04E-03
68	GO:0006457: protein folding	2.13E-03
69	GO:0044209: AMP salvage	2.61E-03
70	GO:0015991: ATP hydrolysis coupled proton transport	2.61E-03
71	GO:0036065: fucosylation	2.61E-03
72	GO:0042254: ribosome biogenesis	2.90E-03
73	GO:0015986: ATP synthesis coupled proton transport	3.02E-03
74	GO:0002238: response to molecule of fungal origin	3.22E-03
75	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	3.22E-03
76	GO:0009651: response to salt stress	3.24E-03
77	GO:0009955: adaxial/abaxial pattern specification	3.87E-03
78	GO:1901001: negative regulation of response to salt stress	3.87E-03
79	GO:0009612: response to mechanical stimulus	3.87E-03
80	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	3.87E-03
81	GO:0009554: megasporogenesis	3.87E-03
82	GO:0030163: protein catabolic process	3.94E-03
83	GO:0032880: regulation of protein localization	4.57E-03
84	GO:0048528: post-embryonic root development	4.57E-03
85	GO:0000338: protein deneddylation	4.57E-03
86	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	4.57E-03
87	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	5.30E-03
88	GO:0009690: cytokinin metabolic process	5.30E-03
89	GO:0006506: GPI anchor biosynthetic process	5.30E-03
90	GO:0000028: ribosomal small subunit assembly	5.30E-03
91	GO:0031540: regulation of anthocyanin biosynthetic process	5.30E-03
92	GO:0006950: response to stress	5.89E-03
93	GO:0010093: specification of floral organ identity	6.08E-03
94	GO:0022900: electron transport chain	6.08E-03
95	GO:0001510: RNA methylation	6.08E-03
96	GO:0010100: negative regulation of photomorphogenesis	6.08E-03
97	GO:0006526: arginine biosynthetic process	6.08E-03
98	GO:0009733: response to auxin	6.46E-03
99	GO:0009832: plant-type cell wall biogenesis	6.86E-03
100	GO:0098656: anion transmembrane transport	6.89E-03
101	GO:0046685: response to arsenic-containing substance	6.89E-03
102	GO:0009245: lipid A biosynthetic process	6.89E-03
103	GO:0006189: 'de novo' IMP biosynthetic process	6.89E-03
104	GO:0048589: developmental growth	6.89E-03
105	GO:0071577: zinc II ion transmembrane transport	7.74E-03
106	GO:0010449: root meristem growth	7.74E-03
107	GO:0015031: protein transport	8.24E-03
108	GO:0009853: photorespiration	8.28E-03
109	GO:0000103: sulfate assimilation	8.62E-03
110	GO:0043069: negative regulation of programmed cell death	8.62E-03
111	GO:0006913: nucleocytoplasmic transport	9.55E-03
112	GO:0048229: gametophyte development	9.55E-03
113	GO:0071365: cellular response to auxin stimulus	1.05E-02
114	GO:0006820: anion transport	1.05E-02
115	GO:0009926: auxin polar transport	1.07E-02
116	GO:0006626: protein targeting to mitochondrion	1.15E-02
117	GO:0006807: nitrogen compound metabolic process	1.15E-02
118	GO:0006108: malate metabolic process	1.15E-02
119	GO:0048467: gynoecium development	1.25E-02
120	GO:0007034: vacuolar transport	1.25E-02
121	GO:0009969: xyloglucan biosynthetic process	1.36E-02
122	GO:0007030: Golgi organization	1.36E-02
123	GO:0019853: L-ascorbic acid biosynthetic process	1.36E-02
124	GO:0006486: protein glycosylation	1.45E-02
125	GO:0006071: glycerol metabolic process	1.47E-02
126	GO:0009735: response to cytokinin	1.47E-02
127	GO:0009116: nucleoside metabolic process	1.58E-02
128	GO:0000027: ribosomal large subunit assembly	1.58E-02
129	GO:0006406: mRNA export from nucleus	1.58E-02
130	GO:0006289: nucleotide-excision repair	1.58E-02
131	GO:0008299: isoprenoid biosynthetic process	1.69E-02
132	GO:0016192: vesicle-mediated transport	1.80E-02
133	GO:0010431: seed maturation	1.81E-02
134	GO:0007005: mitochondrion organization	1.93E-02
135	GO:0009553: embryo sac development	2.00E-02
136	GO:0006012: galactose metabolic process	2.05E-02
137	GO:0010089: xylem development	2.18E-02
138	GO:0019722: calcium-mediated signaling	2.18E-02
139	GO:0042147: retrograde transport, endosome to Golgi	2.31E-02
140	GO:0051028: mRNA transport	2.31E-02
141	GO:0006606: protein import into nucleus	2.44E-02
142	GO:0034220: ion transmembrane transport	2.44E-02
143	GO:0000413: protein peptidyl-prolyl isomerization	2.44E-02
144	GO:0010051: xylem and phloem pattern formation	2.44E-02
145	GO:0006662: glycerol ether metabolic process	2.57E-02
146	GO:0048868: pollen tube development	2.57E-02
147	GO:0006623: protein targeting to vacuole	2.85E-02
148	GO:0048825: cotyledon development	2.85E-02
149	GO:0009556: microsporogenesis	2.85E-02
150	GO:0080156: mitochondrial mRNA modification	2.99E-02
151	GO:0010193: response to ozone	2.99E-02
152	GO:0009630: gravitropism	3.13E-02
153	GO:0009567: double fertilization forming a zygote and endosperm	3.42E-02
154	GO:0006914: autophagy	3.42E-02
155	GO:0010286: heat acclimation	3.58E-02
156	GO:0000910: cytokinesis	3.73E-02
157	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.04E-02
158	GO:0009627: systemic acquired resistance	4.20E-02
159	GO:0009734: auxin-activated signaling pathway	4.22E-02
160	GO:0015995: chlorophyll biosynthetic process	4.36E-02
161	GO:0016049: cell growth	4.52E-02
162	GO:0009817: defense response to fungus, incompatible interaction	4.69E-02
163	GO:0042742: defense response to bacterium	4.73E-02
164	GO:0010311: lateral root formation	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0051997: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity	0.00E+00
2	GO:0004615: phosphomannomutase activity	0.00E+00
3	GO:0050152: omega-amidase activity	0.00E+00
4	GO:0004637: phosphoribosylamine-glycine ligase activity	0.00E+00
5	GO:0052873: FMN reductase (NADPH) activity	0.00E+00
6	GO:0047886: farnesol dehydrogenase activity	0.00E+00
7	GO:0008777: acetylornithine deacetylase activity	0.00E+00
8	GO:0033971: hydroxyisourate hydrolase activity	0.00E+00
9	GO:0008752: FMN reductase activity	0.00E+00
10	GO:0004298: threonine-type endopeptidase activity	1.79E-31
11	GO:0008233: peptidase activity	1.50E-16
12	GO:0003735: structural constituent of ribosome	4.32E-07
13	GO:0003756: protein disulfide isomerase activity	1.08E-05
14	GO:0004129: cytochrome-c oxidase activity	3.52E-05
15	GO:0004576: oligosaccharyl transferase activity	5.85E-05
16	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	9.24E-05
17	GO:0031386: protein tag	9.24E-05
18	GO:0008320: protein transmembrane transporter activity	2.39E-04
19	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.90E-04
20	GO:0003975: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity	2.99E-04
21	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	2.99E-04
22	GO:0008137: NADH dehydrogenase (ubiquinone) activity	3.87E-04
23	GO:0008805: carbon-monoxide oxygenase activity	6.55E-04
24	GO:0019172: glyoxalase III activity	6.55E-04
25	GO:0004826: phenylalanine-tRNA ligase activity	6.55E-04
26	GO:0008963: phospho-N-acetylmuramoyl-pentapeptide-transferase activity	6.55E-04
27	GO:0046961: proton-transporting ATPase activity, rotational mechanism	7.11E-04
28	GO:0050897: cobalt ion binding	1.04E-03
29	GO:0005457: GDP-fucose transmembrane transporter activity	1.06E-03
30	GO:0052692: raffinose alpha-galactosidase activity	1.06E-03
31	GO:0008430: selenium binding	1.06E-03
32	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.06E-03
33	GO:0004557: alpha-galactosidase activity	1.06E-03
34	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.06E-03
35	GO:0005528: FK506 binding	1.42E-03
36	GO:0017089: glycolipid transporter activity	1.52E-03
37	GO:0003999: adenine phosphoribosyltransferase activity	1.52E-03
38	GO:0005460: UDP-glucose transmembrane transporter activity	1.52E-03
39	GO:0010011: auxin binding	2.04E-03
40	GO:0051861: glycolipid binding	2.04E-03
41	GO:0015369: calcium:proton antiporter activity	2.04E-03
42	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.04E-03
43	GO:0070628: proteasome binding	2.04E-03
44	GO:0015368: calcium:cation antiporter activity	2.04E-03
45	GO:0005459: UDP-galactose transmembrane transporter activity	2.61E-03
46	GO:0004040: amidase activity	2.61E-03
47	GO:0016853: isomerase activity	3.02E-03
48	GO:0031593: polyubiquitin binding	3.22E-03
49	GO:0031177: phosphopantetheine binding	3.22E-03
50	GO:0036402: proteasome-activating ATPase activity	3.22E-03
51	GO:0003729: mRNA binding	3.78E-03
52	GO:0102391: decanoate--CoA ligase activity	3.87E-03
53	GO:0000035: acyl binding	3.87E-03
54	GO:0004602: glutathione peroxidase activity	3.87E-03
55	GO:0004656: procollagen-proline 4-dioxygenase activity	3.87E-03
56	GO:0008237: metallopeptidase activity	4.45E-03
57	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	4.57E-03
58	GO:0042162: telomeric DNA binding	4.57E-03
59	GO:0008121: ubiquinol-cytochrome-c reductase activity	4.57E-03
60	GO:0008143: poly(A) binding	4.57E-03
61	GO:0004467: long-chain fatty acid-CoA ligase activity	4.57E-03
62	GO:0019843: rRNA binding	4.89E-03
63	GO:0015288: porin activity	5.30E-03
64	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	5.30E-03
65	GO:0004034: aldose 1-epimerase activity	5.30E-03
66	GO:0043022: ribosome binding	5.30E-03
67	GO:0015491: cation:cation antiporter activity	5.30E-03
68	GO:0008308: voltage-gated anion channel activity	6.08E-03
69	GO:0008173: RNA methyltransferase activity	6.08E-03
70	GO:0008417: fucosyltransferase activity	6.89E-03
71	GO:0008889: glycerophosphodiester phosphodiesterase activity	6.89E-03
72	GO:0003746: translation elongation factor activity	8.28E-03
73	GO:0003697: single-stranded DNA binding	8.28E-03
74	GO:0008794: arsenate reductase (glutaredoxin) activity	9.55E-03
75	GO:0005515: protein binding	9.67E-03
76	GO:0000049: tRNA binding	1.05E-02
77	GO:0043621: protein self-association	1.16E-02
78	GO:0004175: endopeptidase activity	1.25E-02
79	GO:0008266: poly(U) RNA binding	1.25E-02
80	GO:0017025: TBP-class protein binding	1.36E-02
81	GO:0003712: transcription cofactor activity	1.36E-02
82	GO:0031418: L-ascorbic acid binding	1.58E-02
83	GO:0005385: zinc ion transmembrane transporter activity	1.58E-02
84	GO:0043130: ubiquitin binding	1.58E-02
85	GO:0004540: ribonuclease activity	1.81E-02
86	GO:0015035: protein disulfide oxidoreductase activity	2.12E-02
87	GO:0008514: organic anion transmembrane transporter activity	2.18E-02
88	GO:0047134: protein-disulfide reductase activity	2.31E-02
89	GO:0046873: metal ion transmembrane transporter activity	2.57E-02
90	GO:0008536: Ran GTPase binding	2.57E-02
91	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.57E-02
92	GO:0003713: transcription coactivator activity	2.57E-02
93	GO:0030246: carbohydrate binding	2.62E-02
94	GO:0004791: thioredoxin-disulfide reductase activity	2.71E-02
95	GO:0050662: coenzyme binding	2.71E-02
96	GO:0010181: FMN binding	2.71E-02
97	GO:0005507: copper ion binding	2.84E-02
98	GO:0004872: receptor activity	2.85E-02
99	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.28E-02
100	GO:0003684: damaged DNA binding	3.42E-02
101	GO:0015250: water channel activity	3.88E-02
102	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.69E-02
103	GO:0016887: ATPase activity	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	1.45E-33
2	GO:0005839: proteasome core complex	1.79E-31
3	GO:0019773: proteasome core complex, alpha-subunit complex	6.80E-17
4	GO:0005829: cytosol	3.18E-15
5	GO:0005783: endoplasmic reticulum	4.45E-12
6	GO:0005774: vacuolar membrane	1.75E-11
7	GO:0005788: endoplasmic reticulum lumen	6.85E-11
8	GO:0005773: vacuole	5.05E-09
9	GO:0022626: cytosolic ribosome	8.76E-09
10	GO:0005747: mitochondrial respiratory chain complex I	4.83E-06
11	GO:0005737: cytoplasm	2.05E-05
12	GO:0022625: cytosolic large ribosomal subunit	2.84E-05
13	GO:0005840: ribosome	2.91E-05
14	GO:0005753: mitochondrial proton-transporting ATP synthase complex	7.89E-05
15	GO:0008250: oligosaccharyltransferase complex	9.24E-05
16	GO:0015934: large ribosomal subunit	1.23E-04
17	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	2.39E-04
18	GO:0031234: extrinsic component of cytoplasmic side of plasma membrane	2.99E-04
19	GO:0019774: proteasome core complex, beta-subunit complex	2.99E-04
20	GO:0005789: endoplasmic reticulum membrane	4.19E-04
21	GO:0032580: Golgi cisterna membrane	4.97E-04
22	GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain	6.55E-04
23	GO:0005697: telomerase holoenzyme complex	6.55E-04
24	GO:0008541: proteasome regulatory particle, lid subcomplex	7.11E-04
25	GO:0005750: mitochondrial respiratory chain complex III	1.03E-03
26	GO:0046861: glyoxysomal membrane	1.06E-03
27	GO:0005758: mitochondrial intermembrane space	1.42E-03
28	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.52E-03
29	GO:0033180: proton-transporting V-type ATPase, V1 domain	1.52E-03
30	GO:0009507: chloroplast	1.53E-03
31	GO:0045271: respiratory chain complex I	1.56E-03
32	GO:0005730: nucleolus	1.68E-03
33	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	2.04E-03
34	GO:0005746: mitochondrial respiratory chain	2.61E-03
35	GO:0005794: Golgi apparatus	3.07E-03
36	GO:0030904: retromer complex	3.22E-03
37	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	3.22E-03
38	GO:0005771: multivesicular body	3.22E-03
39	GO:0031597: cytosolic proteasome complex	3.87E-03
40	GO:0005732: small nucleolar ribonucleoprotein complex	4.11E-03
41	GO:0031595: nuclear proteasome complex	4.57E-03
42	GO:0000421: autophagosome membrane	5.30E-03
43	GO:0046930: pore complex	6.08E-03
44	GO:0009514: glyoxysome	6.08E-03
45	GO:0005763: mitochondrial small ribosomal subunit	6.89E-03
46	GO:0008180: COP9 signalosome	6.89E-03
47	GO:0031090: organelle membrane	6.89E-03
48	GO:0009705: plant-type vacuole membrane	7.38E-03
49	GO:0008540: proteasome regulatory particle, base subcomplex	7.74E-03
50	GO:0005740: mitochondrial envelope	8.62E-03
51	GO:0022627: cytosolic small ribosomal subunit	1.06E-02
52	GO:0009508: plastid chromosome	1.15E-02
53	GO:0031966: mitochondrial membrane	1.35E-02
54	GO:0005769: early endosome	1.47E-02
55	GO:0005635: nuclear envelope	1.55E-02
56	GO:0070469: respiratory chain	1.69E-02
57	GO:0015935: small ribosomal subunit	1.81E-02
58	GO:0005741: mitochondrial outer membrane	1.81E-02
59	GO:0031410: cytoplasmic vesicle	1.93E-02
60	GO:0005618: cell wall	3.00E-02
61	GO:0009295: nucleoid	3.58E-02
62	GO:0005643: nuclear pore	4.69E-02