co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G52590

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046294: formaldehyde catabolic process	0.00E+00
2	GO:0016093: polyprenol metabolic process	0.00E+00
3	GO:0036172: thiamine salvage	0.00E+00
4	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
5	GO:0032928: regulation of superoxide anion generation	0.00E+00
6	GO:0006720: isoprenoid metabolic process	0.00E+00
7	GO:0032780: negative regulation of ATPase activity	0.00E+00
8	GO:0016487: farnesol metabolic process	4.88E-05
9	GO:0055114: oxidation-reduction process	1.18E-04
10	GO:2000030: regulation of response to red or far red light	1.20E-04
11	GO:0016122: xanthophyll metabolic process	1.20E-04
12	GO:0071492: cellular response to UV-A	2.06E-04
13	GO:0006221: pyrimidine nucleotide biosynthetic process	4.04E-04
14	GO:0034613: cellular protein localization	4.04E-04
15	GO:0071486: cellular response to high light intensity	4.04E-04
16	GO:0009765: photosynthesis, light harvesting	4.04E-04
17	GO:0010117: photoprotection	5.13E-04
18	GO:0009229: thiamine diphosphate biosynthetic process	5.13E-04
19	GO:0009228: thiamine biosynthetic process	6.29E-04
20	GO:0006796: phosphate-containing compound metabolic process	6.29E-04
21	GO:0033365: protein localization to organelle	6.29E-04
22	GO:0009117: nucleotide metabolic process	6.29E-04
23	GO:0006555: methionine metabolic process	6.29E-04
24	GO:0010043: response to zinc ion	6.67E-04
25	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	7.50E-04
26	GO:0010189: vitamin E biosynthetic process	7.50E-04
27	GO:0019509: L-methionine salvage from methylthioadenosine	7.50E-04
28	GO:0045454: cell redox homeostasis	9.09E-04
29	GO:0005978: glycogen biosynthetic process	1.01E-03
30	GO:0009880: embryonic pattern specification	1.14E-03
31	GO:0051603: proteolysis involved in cellular protein catabolic process	1.27E-03
32	GO:0006508: proteolysis	1.40E-03
33	GO:0009098: leucine biosynthetic process	1.43E-03
34	GO:0009688: abscisic acid biosynthetic process	1.59E-03
35	GO:0043085: positive regulation of catalytic activity	1.75E-03
36	GO:0006879: cellular iron ion homeostasis	1.75E-03
37	GO:0048440: carpel development	2.26E-03
38	GO:0006487: protein N-linked glycosylation	2.81E-03
39	GO:0019915: lipid storage	3.20E-03
40	GO:0016226: iron-sulfur cluster assembly	3.41E-03
41	GO:0006012: galactose metabolic process	3.61E-03
42	GO:0010051: xylem and phloem pattern formation	4.26E-03
43	GO:0006662: glycerol ether metabolic process	4.48E-03
44	GO:0019252: starch biosynthetic process	4.94E-03
45	GO:0008654: phospholipid biosynthetic process	4.94E-03
46	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	5.18E-03
47	GO:0019761: glucosinolate biosynthetic process	5.42E-03
48	GO:0030163: protein catabolic process	5.66E-03
49	GO:0008152: metabolic process	9.16E-03
50	GO:0009853: photorespiration	9.47E-03
51	GO:0034599: cellular response to oxidative stress	9.77E-03
52	GO:0006099: tricarboxylic acid cycle	9.77E-03
53	GO:0046686: response to cadmium ion	1.03E-02
54	GO:0006486: protein glycosylation	1.40E-02
55	GO:0007049: cell cycle	3.91E-02
56	GO:0006810: transport	4.39E-02
57	GO:0005975: carbohydrate metabolic process	4.54E-02
58	GO:0045892: negative regulation of transcription, DNA-templated	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0050486: intramolecular transferase activity, transferring hydroxy groups	0.00E+00
2	GO:0052671: geranylgeraniol kinase activity	0.00E+00
3	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
4	GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity	0.00E+00
5	GO:0042030: ATPase inhibitor activity	0.00E+00
6	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
7	GO:0052670: geraniol kinase activity	0.00E+00
8	GO:0052668: farnesol kinase activity	0.00E+00
9	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
10	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.36E-06
11	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	4.88E-05
12	GO:0004046: aminoacylase activity	1.20E-04
13	GO:0004848: ureidoglycolate hydrolase activity	2.06E-04
14	GO:0003861: 3-isopropylmalate dehydratase activity	2.06E-04
15	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	2.06E-04
16	GO:0016853: isomerase activity	2.70E-04
17	GO:0035529: NADH pyrophosphatase activity	3.01E-04
18	GO:0008878: glucose-1-phosphate adenylyltransferase activity	4.04E-04
19	GO:0004605: phosphatidate cytidylyltransferase activity	6.29E-04
20	GO:0051920: peroxiredoxin activity	7.50E-04
21	GO:0004427: inorganic diphosphatase activity	8.75E-04
22	GO:0004185: serine-type carboxypeptidase activity	9.27E-04
23	GO:0016209: antioxidant activity	1.01E-03
24	GO:0004034: aldose 1-epimerase activity	1.01E-03
25	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	1.28E-03
26	GO:0008047: enzyme activator activity	1.59E-03
27	GO:0004129: cytochrome-c oxidase activity	1.75E-03
28	GO:0015266: protein channel activity	2.08E-03
29	GO:0031072: heat shock protein binding	2.08E-03
30	GO:0016787: hydrolase activity	3.48E-03
31	GO:0047134: protein-disulfide reductase activity	4.04E-03
32	GO:0004791: thioredoxin-disulfide reductase activity	4.71E-03
33	GO:0048038: quinone binding	5.18E-03
34	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	5.66E-03
35	GO:0016168: chlorophyll binding	6.94E-03
36	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	8.03E-03
37	GO:0016491: oxidoreductase activity	8.35E-03
38	GO:0051539: 4 iron, 4 sulfur cluster binding	1.04E-02
39	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.26E-02
40	GO:0008234: cysteine-type peptidase activity	1.50E-02
41	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.61E-02
42	GO:0022857: transmembrane transporter activity	1.72E-02
43	GO:0051082: unfolded protein binding	1.79E-02
44	GO:0016746: transferase activity, transferring acyl groups	1.83E-02
45	GO:0015035: protein disulfide oxidoreductase activity	1.83E-02
46	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.14E-02
47	GO:0016829: lyase activity	2.23E-02
48	GO:0004252: serine-type endopeptidase activity	2.27E-02
49	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.14E-02
50	GO:0003824: catalytic activity	3.29E-02
51	GO:0005215: transporter activity	3.32E-02
52	GO:0000287: magnesium ion binding	3.56E-02
53	GO:0004601: peroxidase activity	3.61E-02
54	GO:0016788: hydrolase activity, acting on ester bonds	3.66E-02
55	GO:0008233: peptidase activity	4.16E-02
56	GO:0004497: monooxygenase activity	4.21E-02
57	GO:0052689: carboxylic ester hydrolase activity	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.06E-09
2	GO:0005747: mitochondrial respiratory chain complex I	1.22E-04
3	GO:0009517: PSII associated light-harvesting complex II	4.04E-04
4	GO:0009527: plastid outer membrane	4.04E-04
5	GO:0045273: respiratory chain complex II	1.01E-03
6	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	1.01E-03
7	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.28E-03
8	GO:0009570: chloroplast stroma	1.42E-03
9	GO:0005765: lysosomal membrane	1.75E-03
10	GO:0045271: respiratory chain complex I	3.01E-03
11	GO:0005744: mitochondrial inner membrane presequence translocase complex	3.82E-03
12	GO:0009523: photosystem II	4.94E-03
13	GO:0031969: chloroplast membrane	5.63E-03
14	GO:0031966: mitochondrial membrane	1.33E-02
15	GO:0005773: vacuole	1.37E-02
16	GO:0009535: chloroplast thylakoid membrane	1.64E-02
17	GO:0005759: mitochondrial matrix	2.47E-02
18	GO:0005840: ribosome	3.14E-02
19	GO:0009536: plastid	3.68E-02
20	GO:0005789: endoplasmic reticulum membrane	4.56E-02