co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G52510

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015717: triose phosphate transport	0.00E+00
2	GO:0000023: maltose metabolic process	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0019323: pentose catabolic process	0.00E+00
5	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
6	GO:0009877: nodulation	0.00E+00
7	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
8	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
9	GO:0016553: base conversion or substitution editing	0.00E+00
10	GO:0090627: plant epidermal cell differentiation	0.00E+00
11	GO:0009735: response to cytokinin	3.46E-12
12	GO:0032544: plastid translation	4.09E-10
13	GO:0006412: translation	1.44E-09
14	GO:0042254: ribosome biogenesis	1.72E-08
15	GO:0015979: photosynthesis	7.34E-08
16	GO:0010027: thylakoid membrane organization	1.12E-06
17	GO:0010025: wax biosynthetic process	1.42E-06
18	GO:0010206: photosystem II repair	8.65E-06
19	GO:0005983: starch catabolic process	2.51E-05
20	GO:0010021: amylopectin biosynthetic process	3.85E-05
21	GO:0010600: regulation of auxin biosynthetic process	3.85E-05
22	GO:0010304: PSII associated light-harvesting complex II catabolic process	9.03E-05
23	GO:0009409: response to cold	1.00E-04
24	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.24E-04
25	GO:0010196: nonphotochemical quenching	1.64E-04
26	GO:0010928: regulation of auxin mediated signaling pathway	2.09E-04
27	GO:0005978: glycogen biosynthetic process	2.09E-04
28	GO:0019252: starch biosynthetic process	2.20E-04
29	GO:0043489: RNA stabilization	2.34E-04
30	GO:0044262: cellular carbohydrate metabolic process	2.34E-04
31	GO:0000025: maltose catabolic process	2.34E-04
32	GO:0009658: chloroplast organization	3.11E-04
33	GO:0042761: very long-chain fatty acid biosynthetic process	3.73E-04
34	GO:0015995: chlorophyll biosynthetic process	4.90E-04
35	GO:0007154: cell communication	5.20E-04
36	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.20E-04
37	GO:0010270: photosystem II oxygen evolving complex assembly	5.20E-04
38	GO:0009629: response to gravity	5.20E-04
39	GO:0005976: polysaccharide metabolic process	5.20E-04
40	GO:0009817: defense response to fungus, incompatible interaction	5.57E-04
41	GO:0006518: peptide metabolic process	8.44E-04
42	GO:0035436: triose phosphate transmembrane transport	8.44E-04
43	GO:0006000: fructose metabolic process	8.44E-04
44	GO:0010731: protein glutathionylation	1.20E-03
45	GO:0006424: glutamyl-tRNA aminoacylation	1.20E-03
46	GO:1902358: sulfate transmembrane transport	1.20E-03
47	GO:0006241: CTP biosynthetic process	1.20E-03
48	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.20E-03
49	GO:0006165: nucleoside diphosphate phosphorylation	1.20E-03
50	GO:0006228: UTP biosynthetic process	1.20E-03
51	GO:0009585: red, far-red light phototransduction	1.49E-03
52	GO:0010037: response to carbon dioxide	1.61E-03
53	GO:0006808: regulation of nitrogen utilization	1.61E-03
54	GO:0015976: carbon utilization	1.61E-03
55	GO:0010023: proanthocyanidin biosynthetic process	1.61E-03
56	GO:0019464: glycine decarboxylation via glycine cleavage system	1.61E-03
57	GO:0009765: photosynthesis, light harvesting	1.61E-03
58	GO:0006183: GTP biosynthetic process	1.61E-03
59	GO:0045727: positive regulation of translation	1.61E-03
60	GO:0006536: glutamate metabolic process	1.61E-03
61	GO:2000122: negative regulation of stomatal complex development	1.61E-03
62	GO:0015713: phosphoglycerate transport	1.61E-03
63	GO:0042335: cuticle development	1.83E-03
64	GO:0046686: response to cadmium ion	1.90E-03
65	GO:0032543: mitochondrial translation	2.05E-03
66	GO:0006461: protein complex assembly	2.05E-03
67	GO:0006544: glycine metabolic process	2.05E-03
68	GO:0009643: photosynthetic acclimation	2.52E-03
69	GO:0006563: L-serine metabolic process	2.52E-03
70	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.52E-03
71	GO:0000470: maturation of LSU-rRNA	2.52E-03
72	GO:0009913: epidermal cell differentiation	2.52E-03
73	GO:0006828: manganese ion transport	2.52E-03
74	GO:0030163: protein catabolic process	2.77E-03
75	GO:1901259: chloroplast rRNA processing	3.03E-03
76	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.03E-03
77	GO:0009955: adaxial/abaxial pattern specification	3.03E-03
78	GO:0009645: response to low light intensity stimulus	3.58E-03
79	GO:0010161: red light signaling pathway	3.58E-03
80	GO:0008272: sulfate transport	3.58E-03
81	GO:0050829: defense response to Gram-negative bacterium	3.58E-03
82	GO:0009704: de-etiolation	4.15E-03
83	GO:0048564: photosystem I assembly	4.15E-03
84	GO:0030091: protein repair	4.15E-03
85	GO:0006002: fructose 6-phosphate metabolic process	4.74E-03
86	GO:0015996: chlorophyll catabolic process	4.74E-03
87	GO:0009657: plastid organization	4.74E-03
88	GO:0006783: heme biosynthetic process	5.37E-03
89	GO:0005982: starch metabolic process	6.03E-03
90	GO:0010205: photoinhibition	6.03E-03
91	GO:0035999: tetrahydrofolate interconversion	6.03E-03
92	GO:0006949: syncytium formation	6.71E-03
93	GO:0006782: protoporphyrinogen IX biosynthetic process	6.71E-03
94	GO:0006415: translational termination	7.43E-03
95	GO:0009750: response to fructose	7.43E-03
96	GO:0018119: peptidyl-cysteine S-nitrosylation	7.43E-03
97	GO:0016485: protein processing	7.43E-03
98	GO:0000038: very long-chain fatty acid metabolic process	7.43E-03
99	GO:0006816: calcium ion transport	7.43E-03
100	GO:0009773: photosynthetic electron transport in photosystem I	7.43E-03
101	GO:0072593: reactive oxygen species metabolic process	7.43E-03
102	GO:0010114: response to red light	7.46E-03
103	GO:0009644: response to high light intensity	8.08E-03
104	GO:0006508: proteolysis	8.27E-03
105	GO:0042742: defense response to bacterium	8.64E-03
106	GO:0006979: response to oxidative stress	8.76E-03
107	GO:0006807: nitrogen compound metabolic process	8.93E-03
108	GO:0009718: anthocyanin-containing compound biosynthetic process	8.93E-03
109	GO:0006094: gluconeogenesis	8.93E-03
110	GO:0009767: photosynthetic electron transport chain	8.93E-03
111	GO:0005986: sucrose biosynthetic process	8.93E-03
112	GO:0010102: lateral root morphogenesis	8.93E-03
113	GO:0019253: reductive pentose-phosphate cycle	9.72E-03
114	GO:0010020: chloroplast fission	9.72E-03
115	GO:0010207: photosystem II assembly	9.72E-03
116	GO:0009833: plant-type primary cell wall biogenesis	1.14E-02
117	GO:0006289: nucleotide-excision repair	1.22E-02
118	GO:0000027: ribosomal large subunit assembly	1.22E-02
119	GO:0009768: photosynthesis, light harvesting in photosystem I	1.31E-02
120	GO:0006418: tRNA aminoacylation for protein translation	1.31E-02
121	GO:0016114: terpenoid biosynthetic process	1.40E-02
122	GO:0009624: response to nematode	1.44E-02
123	GO:0030245: cellulose catabolic process	1.50E-02
124	GO:0010017: red or far-red light signaling pathway	1.50E-02
125	GO:0035428: hexose transmembrane transport	1.50E-02
126	GO:0009411: response to UV	1.59E-02
127	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.59E-02
128	GO:0009693: ethylene biosynthetic process	1.59E-02
129	GO:0009306: protein secretion	1.69E-02
130	GO:0006284: base-excision repair	1.69E-02
131	GO:0008152: metabolic process	1.99E-02
132	GO:0046323: glucose import	1.99E-02
133	GO:0015986: ATP synthesis coupled proton transport	2.10E-02
134	GO:0009790: embryo development	2.11E-02
135	GO:0048825: cotyledon development	2.20E-02
136	GO:0000302: response to reactive oxygen species	2.31E-02
137	GO:0007623: circadian rhythm	2.49E-02
138	GO:0009828: plant-type cell wall loosening	2.65E-02
139	GO:0006310: DNA recombination	2.65E-02
140	GO:0009739: response to gibberellin	2.79E-02
141	GO:0071555: cell wall organization	2.81E-02
142	GO:0016311: dephosphorylation	3.50E-02
143	GO:0030244: cellulose biosynthetic process	3.63E-02
144	GO:0018298: protein-chromophore linkage	3.63E-02
145	GO:0048481: plant ovule development	3.63E-02
146	GO:0009826: unidimensional cell growth	3.71E-02
147	GO:0009832: plant-type cell wall biogenesis	3.76E-02
148	GO:0010218: response to far red light	3.89E-02
149	GO:0009407: toxin catabolic process	3.89E-02
150	GO:0015031: protein transport	3.99E-02
151	GO:0010119: regulation of stomatal movement	4.03E-02
152	GO:0009631: cold acclimation	4.03E-02
153	GO:0055114: oxidation-reduction process	4.13E-02
154	GO:0009637: response to blue light	4.30E-02
155	GO:0009853: photorespiration	4.30E-02
156	GO:0045087: innate immune response	4.30E-02
157	GO:0034599: cellular response to oxidative stress	4.43E-02
158	GO:0080167: response to karrikin	4.76E-02
159	GO:0042542: response to hydrogen peroxide	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0051738: xanthophyll binding	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0005363: maltose transmembrane transporter activity	0.00E+00
5	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
6	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
7	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
8	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
9	GO:0019843: rRNA binding	3.66E-16
10	GO:0003735: structural constituent of ribosome	5.53E-12
11	GO:0008266: poly(U) RNA binding	8.35E-07
12	GO:0004222: metalloendopeptidase activity	5.87E-05
13	GO:0034256: chlorophyll(ide) b reductase activity	2.34E-04
14	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	2.34E-04
15	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.34E-04
16	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.34E-04
17	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.34E-04
18	GO:0004856: xylulokinase activity	2.34E-04
19	GO:0009496: plastoquinol--plastocyanin reductase activity	2.34E-04
20	GO:0004134: 4-alpha-glucanotransferase activity	2.34E-04
21	GO:0004853: uroporphyrinogen decarboxylase activity	2.34E-04
22	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	2.34E-04
23	GO:0008967: phosphoglycolate phosphatase activity	5.20E-04
24	GO:0004618: phosphoglycerate kinase activity	5.20E-04
25	GO:0010297: heteropolysaccharide binding	5.20E-04
26	GO:0033201: alpha-1,4-glucan synthase activity	5.20E-04
27	GO:0004750: ribulose-phosphate 3-epimerase activity	5.20E-04
28	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.20E-04
29	GO:0018708: thiol S-methyltransferase activity	5.20E-04
30	GO:0003844: 1,4-alpha-glucan branching enzyme activity	5.20E-04
31	GO:0017108: 5'-flap endonuclease activity	8.44E-04
32	GO:0045174: glutathione dehydrogenase (ascorbate) activity	8.44E-04
33	GO:0030267: glyoxylate reductase (NADP) activity	8.44E-04
34	GO:0071917: triose-phosphate transmembrane transporter activity	8.44E-04
35	GO:0004324: ferredoxin-NADP+ reductase activity	8.44E-04
36	GO:0043169: cation binding	8.44E-04
37	GO:0004373: glycogen (starch) synthase activity	8.44E-04
38	GO:0017150: tRNA dihydrouridine synthase activity	8.44E-04
39	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	8.44E-04
40	GO:0002161: aminoacyl-tRNA editing activity	8.44E-04
41	GO:0004148: dihydrolipoyl dehydrogenase activity	8.44E-04
42	GO:0005528: FK506 binding	1.01E-03
43	GO:0016851: magnesium chelatase activity	1.20E-03
44	GO:0016149: translation release factor activity, codon specific	1.20E-03
45	GO:0004550: nucleoside diphosphate kinase activity	1.20E-03
46	GO:0043023: ribosomal large subunit binding	1.20E-03
47	GO:0004351: glutamate decarboxylase activity	1.20E-03
48	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.25E-03
49	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.61E-03
50	GO:0015120: phosphoglycerate transmembrane transporter activity	1.61E-03
51	GO:0019104: DNA N-glycosylase activity	1.61E-03
52	GO:0009011: starch synthase activity	1.61E-03
53	GO:0004372: glycine hydroxymethyltransferase activity	2.05E-03
54	GO:0003959: NADPH dehydrogenase activity	2.05E-03
55	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.05E-03
56	GO:0050662: coenzyme binding	2.12E-03
57	GO:2001070: starch binding	2.52E-03
58	GO:0004130: cytochrome-c peroxidase activity	2.52E-03
59	GO:0004602: glutathione peroxidase activity	3.03E-03
60	GO:0051920: peroxiredoxin activity	3.03E-03
61	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.03E-03
62	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.03E-03
63	GO:0008237: metallopeptidase activity	3.12E-03
64	GO:0016168: chlorophyll binding	3.71E-03
65	GO:0016209: antioxidant activity	4.15E-03
66	GO:0008236: serine-type peptidase activity	4.35E-03
67	GO:0016491: oxidoreductase activity	4.36E-03
68	GO:0008271: secondary active sulfate transmembrane transporter activity	4.74E-03
69	GO:0015078: hydrogen ion transmembrane transporter activity	4.74E-03
70	GO:0003747: translation release factor activity	5.37E-03
71	GO:0005384: manganese ion transmembrane transporter activity	6.03E-03
72	GO:0004364: glutathione transferase activity	7.17E-03
73	GO:0015386: potassium:proton antiporter activity	7.43E-03
74	GO:0015116: sulfate transmembrane transporter activity	8.17E-03
75	GO:0000049: tRNA binding	8.17E-03
76	GO:0004022: alcohol dehydrogenase (NAD) activity	8.93E-03
77	GO:0004089: carbonate dehydratase activity	8.93E-03
78	GO:0015095: magnesium ion transmembrane transporter activity	8.93E-03
79	GO:0031072: heat shock protein binding	8.93E-03
80	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.14E-02
81	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.14E-02
82	GO:0031409: pigment binding	1.14E-02
83	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.14E-02
84	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.23E-02
85	GO:0015079: potassium ion transmembrane transporter activity	1.31E-02
86	GO:0004176: ATP-dependent peptidase activity	1.40E-02
87	GO:0016760: cellulose synthase (UDP-forming) activity	1.59E-02
88	GO:0022891: substrate-specific transmembrane transporter activity	1.59E-02
89	GO:0008810: cellulase activity	1.59E-02
90	GO:0004812: aminoacyl-tRNA ligase activity	1.79E-02
91	GO:0030170: pyridoxal phosphate binding	2.00E-02
92	GO:0004252: serine-type endopeptidase activity	2.00E-02
93	GO:0005355: glucose transmembrane transporter activity	2.10E-02
94	GO:0048038: quinone binding	2.31E-02
95	GO:0004518: nuclease activity	2.42E-02
96	GO:0016759: cellulose synthase activity	2.65E-02
97	GO:0003684: damaged DNA binding	2.65E-02
98	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.16E-02
99	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.63E-02
100	GO:0004601: peroxidase activity	3.85E-02
101	GO:0016788: hydrolase activity, acting on ester bonds	3.92E-02
102	GO:0016740: transferase activity	4.60E-02
103	GO:0008233: peptidase activity	4.68E-02
104	GO:0003729: mRNA binding	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0033557: Slx1-Slx4 complex	0.00E+00
3	GO:0009571: proplastid stroma	0.00E+00
4	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
5	GO:0009507: chloroplast	8.71E-57
6	GO:0009941: chloroplast envelope	3.61E-54
7	GO:0009570: chloroplast stroma	3.37E-46
8	GO:0009534: chloroplast thylakoid	6.18E-42
9	GO:0009579: thylakoid	7.57E-34
10	GO:0009535: chloroplast thylakoid membrane	1.56E-33
11	GO:0005840: ribosome	5.68E-12
12	GO:0031977: thylakoid lumen	2.33E-10
13	GO:0010287: plastoglobule	3.93E-10
14	GO:0009543: chloroplast thylakoid lumen	5.05E-10
15	GO:0009533: chloroplast stromal thylakoid	2.78E-06
16	GO:0016020: membrane	6.69E-06
17	GO:0010319: stromule	2.28E-05
18	GO:0009706: chloroplast inner membrane	3.98E-05
19	GO:0031969: chloroplast membrane	7.38E-05
20	GO:0009501: amyloplast	2.09E-04
21	GO:0009538: photosystem I reaction center	2.09E-04
22	GO:0009523: photosystem II	2.20E-04
23	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.34E-04
24	GO:0009295: nucleoid	3.40E-04
25	GO:0030093: chloroplast photosystem I	5.20E-04
26	GO:0000311: plastid large ribosomal subunit	5.76E-04
27	GO:0009508: plastid chromosome	6.54E-04
28	GO:0010007: magnesium chelatase complex	8.44E-04
29	GO:0009517: PSII associated light-harvesting complex II	1.61E-03
30	GO:0009512: cytochrome b6f complex	2.05E-03
31	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	2.52E-03
32	GO:0048046: apoplast	4.38E-03
33	GO:0005763: mitochondrial small ribosomal subunit	5.37E-03
34	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.37E-03
35	GO:0042644: chloroplast nucleoid	5.37E-03
36	GO:0000312: plastid small ribosomal subunit	9.72E-03
37	GO:0030095: chloroplast photosystem II	9.72E-03
38	GO:0030076: light-harvesting complex	1.05E-02
39	GO:0022625: cytosolic large ribosomal subunit	1.14E-02
40	GO:0009536: plastid	1.23E-02
41	GO:0015935: small ribosomal subunit	1.40E-02
42	GO:0009522: photosystem I	2.10E-02
43	GO:0005759: mitochondrial matrix	2.27E-02
44	GO:0071944: cell periphery	2.54E-02
45	GO:0030529: intracellular ribonucleoprotein complex	3.01E-02
46	GO:0022626: cytosolic ribosome	3.41E-02
47	GO:0015934: large ribosomal subunit	4.03E-02