GO Enrichment Analysis of Co-expressed Genes with
AT1G52420
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0023052: signaling | 0.00E+00 |
| 2 | GO:0030149: sphingolipid catabolic process | 0.00E+00 |
| 3 | GO:1990569: UDP-N-acetylglucosamine transmembrane transport | 0.00E+00 |
| 4 | GO:0015789: UDP-N-acetylgalactosamine transport | 0.00E+00 |
| 5 | GO:1901997: negative regulation of indoleacetic acid biosynthetic process via tryptophan | 0.00E+00 |
| 6 | GO:0001881: receptor recycling | 0.00E+00 |
| 7 | GO:0006592: ornithine biosynthetic process | 0.00E+00 |
| 8 | GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process | 0.00E+00 |
| 9 | GO:1903857: negative regulation of cytokinin dehydrogenase activity | 0.00E+00 |
| 10 | GO:0006511: ubiquitin-dependent protein catabolic process | 2.07E-13 |
| 11 | GO:0051603: proteolysis involved in cellular protein catabolic process | 3.15E-07 |
| 12 | GO:0046686: response to cadmium ion | 4.46E-05 |
| 13 | GO:0030163: protein catabolic process | 1.73E-04 |
| 14 | GO:0043687: post-translational protein modification | 1.80E-04 |
| 15 | GO:0044376: RNA polymerase II complex import to nucleus | 1.80E-04 |
| 16 | GO:0055071: manganese ion homeostasis | 1.80E-04 |
| 17 | GO:0010265: SCF complex assembly | 1.80E-04 |
| 18 | GO:0015798: myo-inositol transport | 1.80E-04 |
| 19 | GO:1990542: mitochondrial transmembrane transport | 1.80E-04 |
| 20 | GO:1990022: RNA polymerase III complex localization to nucleus | 1.80E-04 |
| 21 | GO:0051788: response to misfolded protein | 4.05E-04 |
| 22 | GO:0006101: citrate metabolic process | 4.05E-04 |
| 23 | GO:0019752: carboxylic acid metabolic process | 4.05E-04 |
| 24 | GO:0034976: response to endoplasmic reticulum stress | 6.38E-04 |
| 25 | GO:0008333: endosome to lysosome transport | 6.61E-04 |
| 26 | GO:0046417: chorismate metabolic process | 6.61E-04 |
| 27 | GO:0045793: positive regulation of cell size | 6.61E-04 |
| 28 | GO:0010366: negative regulation of ethylene biosynthetic process | 6.61E-04 |
| 29 | GO:0046168: glycerol-3-phosphate catabolic process | 6.61E-04 |
| 30 | GO:0009647: skotomorphogenesis | 9.45E-04 |
| 31 | GO:0006168: adenine salvage | 9.45E-04 |
| 32 | GO:0071786: endoplasmic reticulum tubular network organization | 9.45E-04 |
| 33 | GO:0006882: cellular zinc ion homeostasis | 9.45E-04 |
| 34 | GO:0001676: long-chain fatty acid metabolic process | 9.45E-04 |
| 35 | GO:0046513: ceramide biosynthetic process | 9.45E-04 |
| 36 | GO:0032877: positive regulation of DNA endoreduplication | 9.45E-04 |
| 37 | GO:0051259: protein oligomerization | 9.45E-04 |
| 38 | GO:0006166: purine ribonucleoside salvage | 9.45E-04 |
| 39 | GO:0006072: glycerol-3-phosphate metabolic process | 9.45E-04 |
| 40 | GO:0042147: retrograde transport, endosome to Golgi | 1.18E-03 |
| 41 | GO:0051781: positive regulation of cell division | 1.25E-03 |
| 42 | GO:0010363: regulation of plant-type hypersensitive response | 1.25E-03 |
| 43 | GO:0006623: protein targeting to vacuole | 1.57E-03 |
| 44 | GO:0036065: fucosylation | 1.59E-03 |
| 45 | GO:2000762: regulation of phenylpropanoid metabolic process | 1.59E-03 |
| 46 | GO:0018279: protein N-linked glycosylation via asparagine | 1.59E-03 |
| 47 | GO:0006564: L-serine biosynthetic process | 1.59E-03 |
| 48 | GO:0006097: glyoxylate cycle | 1.59E-03 |
| 49 | GO:1902183: regulation of shoot apical meristem development | 1.59E-03 |
| 50 | GO:0044209: AMP salvage | 1.59E-03 |
| 51 | GO:0045116: protein neddylation | 1.59E-03 |
| 52 | GO:0045454: cell redox homeostasis | 1.67E-03 |
| 53 | GO:0006828: manganese ion transport | 1.96E-03 |
| 54 | GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 1.96E-03 |
| 55 | GO:0043248: proteasome assembly | 1.96E-03 |
| 56 | GO:0042176: regulation of protein catabolic process | 1.96E-03 |
| 57 | GO:0006457: protein folding | 2.03E-03 |
| 58 | GO:0009612: response to mechanical stimulus | 2.35E-03 |
| 59 | GO:0006694: steroid biosynthetic process | 2.35E-03 |
| 60 | GO:1901001: negative regulation of response to salt stress | 2.35E-03 |
| 61 | GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c | 2.77E-03 |
| 62 | GO:0015937: coenzyme A biosynthetic process | 2.77E-03 |
| 63 | GO:0010044: response to aluminum ion | 2.77E-03 |
| 64 | GO:0048528: post-embryonic root development | 2.77E-03 |
| 65 | GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline | 3.21E-03 |
| 66 | GO:0009690: cytokinin metabolic process | 3.21E-03 |
| 67 | GO:0050821: protein stabilization | 3.21E-03 |
| 68 | GO:0031540: regulation of anthocyanin biosynthetic process | 3.21E-03 |
| 69 | GO:0006102: isocitrate metabolic process | 3.21E-03 |
| 70 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 3.34E-03 |
| 71 | GO:0010043: response to zinc ion | 3.63E-03 |
| 72 | GO:0006526: arginine biosynthetic process | 3.67E-03 |
| 73 | GO:0006002: fructose 6-phosphate metabolic process | 3.67E-03 |
| 74 | GO:0045087: innate immune response | 3.98E-03 |
| 75 | GO:0009060: aerobic respiration | 4.15E-03 |
| 76 | GO:0015780: nucleotide-sugar transport | 4.15E-03 |
| 77 | GO:0098656: anion transmembrane transport | 4.15E-03 |
| 78 | GO:0046685: response to arsenic-containing substance | 4.15E-03 |
| 79 | GO:0042761: very long-chain fatty acid biosynthetic process | 4.65E-03 |
| 80 | GO:0071577: zinc II ion transmembrane transport | 4.65E-03 |
| 81 | GO:0006631: fatty acid metabolic process | 4.72E-03 |
| 82 | GO:0043069: negative regulation of programmed cell death | 5.18E-03 |
| 83 | GO:0009641: shade avoidance | 5.18E-03 |
| 84 | GO:0010072: primary shoot apical meristem specification | 5.72E-03 |
| 85 | GO:0072593: reactive oxygen species metabolic process | 5.72E-03 |
| 86 | GO:0009073: aromatic amino acid family biosynthetic process | 5.72E-03 |
| 87 | GO:0016485: protein processing | 5.72E-03 |
| 88 | GO:0006816: calcium ion transport | 5.72E-03 |
| 89 | GO:0009698: phenylpropanoid metabolic process | 5.72E-03 |
| 90 | GO:0006820: anion transport | 6.28E-03 |
| 91 | GO:0007034: vacuolar transport | 7.46E-03 |
| 92 | GO:0090351: seedling development | 8.08E-03 |
| 93 | GO:0010053: root epidermal cell differentiation | 8.08E-03 |
| 94 | GO:0009969: xyloglucan biosynthetic process | 8.08E-03 |
| 95 | GO:0006886: intracellular protein transport | 8.67E-03 |
| 96 | GO:0006289: nucleotide-excision repair | 9.37E-03 |
| 97 | GO:0006487: protein N-linked glycosylation | 9.37E-03 |
| 98 | GO:0009116: nucleoside metabolic process | 9.37E-03 |
| 99 | GO:0009695: jasmonic acid biosynthetic process | 1.00E-02 |
| 100 | GO:0031408: oxylipin biosynthetic process | 1.07E-02 |
| 101 | GO:0035428: hexose transmembrane transport | 1.14E-02 |
| 102 | GO:0030433: ubiquitin-dependent ERAD pathway | 1.14E-02 |
| 103 | GO:0010584: pollen exine formation | 1.29E-02 |
| 104 | GO:0000413: protein peptidyl-prolyl isomerization | 1.44E-02 |
| 105 | GO:0010051: xylem and phloem pattern formation | 1.44E-02 |
| 106 | GO:0008360: regulation of cell shape | 1.52E-02 |
| 107 | GO:0006520: cellular amino acid metabolic process | 1.52E-02 |
| 108 | GO:0048868: pollen tube development | 1.52E-02 |
| 109 | GO:0046323: glucose import | 1.52E-02 |
| 110 | GO:0015986: ATP synthesis coupled proton transport | 1.60E-02 |
| 111 | GO:0048825: cotyledon development | 1.68E-02 |
| 112 | GO:0009851: auxin biosynthetic process | 1.68E-02 |
| 113 | GO:0010183: pollen tube guidance | 1.68E-02 |
| 114 | GO:0010193: response to ozone | 1.77E-02 |
| 115 | GO:0080156: mitochondrial mRNA modification | 1.77E-02 |
| 116 | GO:0006914: autophagy | 2.03E-02 |
| 117 | GO:0009567: double fertilization forming a zygote and endosperm | 2.03E-02 |
| 118 | GO:0010286: heat acclimation | 2.11E-02 |
| 119 | GO:0016579: protein deubiquitination | 2.20E-02 |
| 120 | GO:0000910: cytokinesis | 2.20E-02 |
| 121 | GO:0015031: protein transport | 2.29E-02 |
| 122 | GO:0016126: sterol biosynthetic process | 2.30E-02 |
| 123 | GO:0009627: systemic acquired resistance | 2.48E-02 |
| 124 | GO:0006888: ER to Golgi vesicle-mediated transport | 2.58E-02 |
| 125 | GO:0006950: response to stress | 2.58E-02 |
| 126 | GO:0009817: defense response to fungus, incompatible interaction | 2.77E-02 |
| 127 | GO:0009832: plant-type cell wall biogenesis | 2.87E-02 |
| 128 | GO:0048767: root hair elongation | 2.87E-02 |
| 129 | GO:0009407: toxin catabolic process | 2.97E-02 |
| 130 | GO:0009853: photorespiration | 3.28E-02 |
| 131 | GO:0006099: tricarboxylic acid cycle | 3.39E-02 |
| 132 | GO:0009651: response to salt stress | 3.55E-02 |
| 133 | GO:0030001: metal ion transport | 3.60E-02 |
| 134 | GO:0009926: auxin polar transport | 3.93E-02 |
| 135 | GO:0051707: response to other organism | 3.93E-02 |
| 136 | GO:0008643: carbohydrate transport | 4.16E-02 |
| 137 | GO:0009636: response to toxic substance | 4.27E-02 |
| 138 | GO:0009846: pollen germination | 4.62E-02 |
| 139 | GO:0009751: response to salicylic acid | 4.74E-02 |
| 140 | GO:0009408: response to heat | 4.81E-02 |
| 141 | GO:0006486: protein glycosylation | 4.86E-02 |
| 142 | GO:0009736: cytokinin-activated signaling pathway | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008777: acetylornithine deacetylase activity | 0.00E+00 |
| 2 | GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity | 0.00E+00 |
| 3 | GO:0015410: manganese-transporting ATPase activity | 0.00E+00 |
| 4 | GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity | 0.00E+00 |
| 5 | GO:0016881: acid-amino acid ligase activity | 0.00E+00 |
| 6 | GO:0008117: sphinganine-1-phosphate aldolase activity | 0.00E+00 |
| 7 | GO:0004298: threonine-type endopeptidase activity | 5.98E-19 |
| 8 | GO:0008233: peptidase activity | 5.21E-13 |
| 9 | GO:0004576: oligosaccharyl transferase activity | 1.12E-07 |
| 10 | GO:0031593: polyubiquitin binding | 5.00E-07 |
| 11 | GO:0043130: ubiquitin binding | 3.60E-05 |
| 12 | GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 3.97E-05 |
| 13 | GO:0030544: Hsp70 protein binding | 1.80E-04 |
| 14 | GO:0047326: inositol tetrakisphosphate 5-kinase activity | 1.80E-04 |
| 15 | GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity | 1.80E-04 |
| 16 | GO:0004321: fatty-acyl-CoA synthase activity | 1.80E-04 |
| 17 | GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity | 1.80E-04 |
| 18 | GO:0000824: inositol tetrakisphosphate 3-kinase activity | 1.80E-04 |
| 19 | GO:0010326: methionine-oxo-acid transaminase activity | 4.05E-04 |
| 20 | GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity | 4.05E-04 |
| 21 | GO:0004106: chorismate mutase activity | 4.05E-04 |
| 22 | GO:0005366: myo-inositol:proton symporter activity | 4.05E-04 |
| 23 | GO:0050291: sphingosine N-acyltransferase activity | 4.05E-04 |
| 24 | GO:0004594: pantothenate kinase activity | 4.05E-04 |
| 25 | GO:0019781: NEDD8 activating enzyme activity | 4.05E-04 |
| 26 | GO:0004617: phosphoglycerate dehydrogenase activity | 4.05E-04 |
| 27 | GO:0003994: aconitate hydratase activity | 4.05E-04 |
| 28 | GO:0008805: carbon-monoxide oxygenase activity | 4.05E-04 |
| 29 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 6.61E-04 |
| 30 | GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity | 6.61E-04 |
| 31 | GO:0003999: adenine phosphoribosyltransferase activity | 9.45E-04 |
| 32 | GO:0017077: oxidative phosphorylation uncoupler activity | 9.45E-04 |
| 33 | GO:0003756: protein disulfide isomerase activity | 1.09E-03 |
| 34 | GO:0070628: proteasome binding | 1.25E-03 |
| 35 | GO:0010011: auxin binding | 1.25E-03 |
| 36 | GO:0016853: isomerase activity | 1.47E-03 |
| 37 | GO:0004040: amidase activity | 1.59E-03 |
| 38 | GO:0008641: small protein activating enzyme activity | 1.59E-03 |
| 39 | GO:0036402: proteasome-activating ATPase activity | 1.96E-03 |
| 40 | GO:0008237: metallopeptidase activity | 2.16E-03 |
| 41 | GO:0102391: decanoate--CoA ligase activity | 2.35E-03 |
| 42 | GO:0004656: procollagen-proline 4-dioxygenase activity | 2.35E-03 |
| 43 | GO:0003872: 6-phosphofructokinase activity | 2.77E-03 |
| 44 | GO:0004467: long-chain fatty acid-CoA ligase activity | 2.77E-03 |
| 45 | GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity | 2.77E-03 |
| 46 | GO:0016831: carboxy-lyase activity | 2.77E-03 |
| 47 | GO:0005338: nucleotide-sugar transmembrane transporter activity | 2.77E-03 |
| 48 | GO:0015288: porin activity | 3.21E-03 |
| 49 | GO:0005524: ATP binding | 3.36E-03 |
| 50 | GO:0008308: voltage-gated anion channel activity | 3.67E-03 |
| 51 | GO:0000989: transcription factor activity, transcription factor binding | 4.15E-03 |
| 52 | GO:0008417: fucosyltransferase activity | 4.15E-03 |
| 53 | GO:0016207: 4-coumarate-CoA ligase activity | 4.15E-03 |
| 54 | GO:0003993: acid phosphatase activity | 4.16E-03 |
| 55 | GO:0016887: ATPase activity | 4.49E-03 |
| 56 | GO:0030234: enzyme regulator activity | 5.18E-03 |
| 57 | GO:0008794: arsenate reductase (glutaredoxin) activity | 5.72E-03 |
| 58 | GO:0051287: NAD binding | 6.20E-03 |
| 59 | GO:0031072: heat shock protein binding | 6.86E-03 |
| 60 | GO:0005388: calcium-transporting ATPase activity | 6.86E-03 |
| 61 | GO:0008266: poly(U) RNA binding | 7.46E-03 |
| 62 | GO:0017025: TBP-class protein binding | 8.08E-03 |
| 63 | GO:0004190: aspartic-type endopeptidase activity | 8.08E-03 |
| 64 | GO:0031418: L-ascorbic acid binding | 9.37E-03 |
| 65 | GO:0004722: protein serine/threonine phosphatase activity | 9.37E-03 |
| 66 | GO:0005385: zinc ion transmembrane transporter activity | 9.37E-03 |
| 67 | GO:0030170: pyridoxal phosphate binding | 1.37E-02 |
| 68 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.52E-02 |
| 69 | GO:0046873: metal ion transmembrane transporter activity | 1.52E-02 |
| 70 | GO:0001085: RNA polymerase II transcription factor binding | 1.52E-02 |
| 71 | GO:0005355: glucose transmembrane transporter activity | 1.60E-02 |
| 72 | GO:0005351: sugar:proton symporter activity | 1.67E-02 |
| 73 | GO:0004872: receptor activity | 1.68E-02 |
| 74 | GO:0004843: thiol-dependent ubiquitin-specific protease activity | 1.77E-02 |
| 75 | GO:0005515: protein binding | 1.93E-02 |
| 76 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.94E-02 |
| 77 | GO:0003684: damaged DNA binding | 2.03E-02 |
| 78 | GO:0008483: transaminase activity | 2.11E-02 |
| 79 | GO:0016597: amino acid binding | 2.20E-02 |
| 80 | GO:0003729: mRNA binding | 2.89E-02 |
| 81 | GO:0004222: metalloendopeptidase activity | 2.97E-02 |
| 82 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 3.08E-02 |
| 83 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 3.28E-02 |
| 84 | GO:0003746: translation elongation factor activity | 3.28E-02 |
| 85 | GO:0003697: single-stranded DNA binding | 3.28E-02 |
| 86 | GO:0005507: copper ion binding | 3.49E-02 |
| 87 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.60E-02 |
| 88 | GO:0004364: glutathione transferase activity | 3.82E-02 |
| 89 | GO:0043621: protein self-association | 4.16E-02 |
| 90 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.39E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000502: proteasome complex | 1.07E-26 |
| 2 | GO:0005839: proteasome core complex | 5.98E-19 |
| 3 | GO:0005829: cytosol | 7.10E-15 |
| 4 | GO:0005774: vacuolar membrane | 2.00E-11 |
| 5 | GO:0005783: endoplasmic reticulum | 6.23E-10 |
| 6 | GO:0019773: proteasome core complex, alpha-subunit complex | 2.64E-08 |
| 7 | GO:0008250: oligosaccharyltransferase complex | 3.97E-05 |
| 8 | GO:0005794: Golgi apparatus | 5.76E-05 |
| 9 | GO:0030904: retromer complex | 5.89E-05 |
| 10 | GO:0031595: nuclear proteasome complex | 1.09E-04 |
| 11 | GO:0009510: plasmodesmatal desmotubule | 1.80E-04 |
| 12 | GO:0008540: proteasome regulatory particle, base subcomplex | 2.55E-04 |
| 13 | GO:0005788: endoplasmic reticulum lumen | 2.60E-04 |
| 14 | GO:0008541: proteasome regulatory particle, lid subcomplex | 3.48E-04 |
| 15 | GO:0005773: vacuole | 5.34E-04 |
| 16 | GO:0031902: late endosome membrane | 5.83E-04 |
| 17 | GO:0030124: AP-4 adaptor complex | 6.61E-04 |
| 18 | GO:0046861: glyoxysomal membrane | 6.61E-04 |
| 19 | GO:0005802: trans-Golgi network | 7.53E-04 |
| 20 | GO:0005741: mitochondrial outer membrane | 8.51E-04 |
| 21 | GO:0009331: glycerol-3-phosphate dehydrogenase complex | 9.45E-04 |
| 22 | GO:0071782: endoplasmic reticulum tubular network | 9.45E-04 |
| 23 | GO:0022626: cytosolic ribosome | 1.20E-03 |
| 24 | GO:0005776: autophagosome | 1.25E-03 |
| 25 | GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) | 1.25E-03 |
| 26 | GO:0005945: 6-phosphofructokinase complex | 1.59E-03 |
| 27 | GO:0005771: multivesicular body | 1.96E-03 |
| 28 | GO:0031597: cytosolic proteasome complex | 2.35E-03 |
| 29 | GO:0009506: plasmodesma | 2.71E-03 |
| 30 | GO:0005789: endoplasmic reticulum membrane | 2.75E-03 |
| 31 | GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane | 3.21E-03 |
| 32 | GO:0030131: clathrin adaptor complex | 3.21E-03 |
| 33 | GO:0046930: pore complex | 3.67E-03 |
| 34 | GO:0009514: glyoxysome | 3.67E-03 |
| 35 | GO:0005768: endosome | 3.71E-03 |
| 36 | GO:0031090: organelle membrane | 4.15E-03 |
| 37 | GO:0005737: cytoplasm | 4.69E-03 |
| 38 | GO:0090406: pollen tube | 5.12E-03 |
| 39 | GO:0017119: Golgi transport complex | 5.18E-03 |
| 40 | GO:0030125: clathrin vesicle coat | 5.18E-03 |
| 41 | GO:0005750: mitochondrial respiratory chain complex III | 7.46E-03 |
| 42 | GO:0005753: mitochondrial proton-transporting ATP synthase complex | 8.08E-03 |
| 43 | GO:0016021: integral component of membrane | 8.20E-03 |
| 44 | GO:0005758: mitochondrial intermembrane space | 9.37E-03 |
| 45 | GO:0005905: clathrin-coated pit | 1.07E-02 |
| 46 | GO:0005886: plasma membrane | 1.07E-02 |
| 47 | GO:0031410: cytoplasmic vesicle | 1.14E-02 |
| 48 | GO:0009504: cell plate | 1.68E-02 |
| 49 | GO:0032580: Golgi cisterna membrane | 2.03E-02 |
| 50 | GO:0005667: transcription factor complex | 2.48E-02 |
| 51 | GO:0005777: peroxisome | 2.67E-02 |
| 52 | GO:0000325: plant-type vacuole | 3.08E-02 |
| 53 | GO:0015934: large ribosomal subunit | 3.08E-02 |
| 54 | GO:0005819: spindle | 3.50E-02 |
| 55 | GO:0016020: membrane | 3.52E-02 |
| 56 | GO:0005743: mitochondrial inner membrane | 4.48E-02 |
| 57 | GO:0005618: cell wall | 4.65E-02 |