Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G52300

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090239: regulation of histone H4 acetylation0.00E+00
2GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
3GO:0044843: cell cycle G1/S phase transition0.00E+00
4GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
5GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
6GO:0046487: glyoxylate metabolic process0.00E+00
7GO:0007530: sex determination0.00E+00
8GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
9GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
10GO:0006412: translation1.78E-172
11GO:0042254: ribosome biogenesis3.55E-63
12GO:0000027: ribosomal large subunit assembly3.61E-13
13GO:0006626: protein targeting to mitochondrion1.22E-08
14GO:0000028: ribosomal small subunit assembly1.67E-08
15GO:0009735: response to cytokinin5.07E-06
16GO:0006414: translational elongation1.04E-05
17GO:0009955: adaxial/abaxial pattern specification2.58E-05
18GO:1902626: assembly of large subunit precursor of preribosome6.44E-05
19GO:0002181: cytoplasmic translation6.44E-05
20GO:0000387: spliceosomal snRNP assembly1.40E-04
21GO:0000398: mRNA splicing, via spliceosome2.56E-04
22GO:0006820: anion transport2.65E-04
23GO:0043248: proteasome assembly4.78E-04
24GO:0045040: protein import into mitochondrial outer membrane4.78E-04
25GO:0051603: proteolysis involved in cellular protein catabolic process5.24E-04
26GO:0015801: aromatic amino acid transport6.78E-04
27GO:0017198: N-terminal peptidyl-serine acetylation6.78E-04
28GO:0030490: maturation of SSU-rRNA6.78E-04
29GO:2001006: regulation of cellulose biosynthetic process6.78E-04
30GO:0006434: seryl-tRNA aminoacylation6.78E-04
31GO:0000494: box C/D snoRNA 3'-end processing6.78E-04
32GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.78E-04
33GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.78E-04
34GO:0018002: N-terminal peptidyl-glutamic acid acetylation6.78E-04
35GO:0032365: intracellular lipid transport6.78E-04
36GO:0006407: rRNA export from nucleus6.78E-04
37GO:1990258: histone glutamine methylation6.78E-04
38GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process6.78E-04
39GO:0006475: internal protein amino acid acetylation6.78E-04
40GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c8.07E-04
41GO:0006511: ubiquitin-dependent protein catabolic process1.28E-03
42GO:0045905: positive regulation of translational termination1.46E-03
43GO:0071668: plant-type cell wall assembly1.46E-03
44GO:0045901: positive regulation of translational elongation1.46E-03
45GO:0045041: protein import into mitochondrial intermembrane space1.46E-03
46GO:0098656: anion transmembrane transport1.46E-03
47GO:0048569: post-embryonic animal organ development1.46E-03
48GO:0043981: histone H4-K5 acetylation1.46E-03
49GO:0006452: translational frameshifting1.46E-03
50GO:0009245: lipid A biosynthetic process1.46E-03
51GO:0051788: response to misfolded protein1.46E-03
52GO:0015786: UDP-glucose transport1.46E-03
53GO:0009651: response to salt stress1.61E-03
54GO:0046686: response to cadmium ion1.85E-03
55GO:0045793: positive regulation of cell size2.41E-03
56GO:0015783: GDP-fucose transport2.41E-03
57GO:0034227: tRNA thio-modification2.41E-03
58GO:0042256: mature ribosome assembly2.41E-03
59GO:0090506: axillary shoot meristem initiation2.41E-03
60GO:0009150: purine ribonucleotide metabolic process2.41E-03
61GO:0009793: embryo development ending in seed dormancy2.53E-03
62GO:0006446: regulation of translational initiation3.46E-03
63GO:0046513: ceramide biosynthetic process3.51E-03
64GO:0032877: positive regulation of DNA endoreduplication3.51E-03
65GO:0046836: glycolipid transport3.51E-03
66GO:0006166: purine ribonucleoside salvage3.51E-03
67GO:0070301: cellular response to hydrogen peroxide3.51E-03
68GO:0006241: CTP biosynthetic process3.51E-03
69GO:0072334: UDP-galactose transmembrane transport3.51E-03
70GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.51E-03
71GO:0009647: skotomorphogenesis3.51E-03
72GO:0006165: nucleoside diphosphate phosphorylation3.51E-03
73GO:0006228: UTP biosynthetic process3.51E-03
74GO:0006164: purine nucleotide biosynthetic process3.51E-03
75GO:0006168: adenine salvage3.51E-03
76GO:0051781: positive regulation of cell division4.74E-03
77GO:0042274: ribosomal small subunit biogenesis4.74E-03
78GO:0006183: GTP biosynthetic process4.74E-03
79GO:0010363: regulation of plant-type hypersensitive response4.74E-03
80GO:2000032: regulation of secondary shoot formation4.74E-03
81GO:0030150: protein import into mitochondrial matrix4.81E-03
82GO:0006289: nucleotide-excision repair4.81E-03
83GO:0061077: chaperone-mediated protein folding5.85E-03
84GO:1902183: regulation of shoot apical meristem development6.09E-03
85GO:0044209: AMP salvage6.09E-03
86GO:0071493: cellular response to UV-B6.09E-03
87GO:0031167: rRNA methylation6.09E-03
88GO:0019408: dolichol biosynthetic process6.09E-03
89GO:0007005: mitochondrion organization6.41E-03
90GO:0001731: formation of translation preinitiation complex7.56E-03
91GO:0000470: maturation of LSU-rRNA7.56E-03
92GO:0006413: translational initiation8.59E-03
93GO:0000413: protein peptidyl-prolyl isomerization8.95E-03
94GO:0009965: leaf morphogenesis9.00E-03
95GO:1901001: negative regulation of response to salt stress9.15E-03
96GO:0000911: cytokinesis by cell plate formation9.15E-03
97GO:0042026: protein refolding9.15E-03
98GO:0006458: 'de novo' protein folding9.15E-03
99GO:0098655: cation transmembrane transport9.15E-03
100GO:0032880: regulation of protein localization1.09E-02
101GO:0048528: post-embryonic root development1.09E-02
102GO:0009645: response to low light intensity stimulus1.09E-02
103GO:0010183: pollen tube guidance1.12E-02
104GO:0006364: rRNA processing1.14E-02
105GO:0031540: regulation of anthocyanin biosynthetic process1.27E-02
106GO:0009690: cytokinin metabolic process1.27E-02
107GO:0030968: endoplasmic reticulum unfolded protein response1.46E-02
108GO:0009808: lignin metabolic process1.46E-02
109GO:0022900: electron transport chain1.46E-02
110GO:0001558: regulation of cell growth1.46E-02
111GO:0001510: RNA methylation1.46E-02
112GO:0015031: protein transport1.61E-02
113GO:0006189: 'de novo' IMP biosynthetic process1.66E-02
114GO:0048589: developmental growth1.66E-02
115GO:0009060: aerobic respiration1.66E-02
116GO:0015780: nucleotide-sugar transport1.66E-02
117GO:0042761: very long-chain fatty acid biosynthetic process1.86E-02
118GO:0010015: root morphogenesis2.31E-02
119GO:0006913: nucleocytoplasmic transport2.31E-02
120GO:0015770: sucrose transport2.31E-02
121GO:0016925: protein sumoylation2.54E-02
122GO:0006790: sulfur compound metabolic process2.54E-02
123GO:0010043: response to zinc ion2.64E-02
124GO:2000028: regulation of photoperiodism, flowering2.79E-02
125GO:0010102: lateral root morphogenesis2.79E-02
126GO:0010628: positive regulation of gene expression2.79E-02
127GO:0048467: gynoecium development3.04E-02
128GO:0008283: cell proliferation3.72E-02
129GO:0006487: protein N-linked glycosylation3.83E-02
130GO:0009116: nucleoside metabolic process3.83E-02
131GO:0006406: mRNA export from nucleus3.83E-02
132GO:0009644: response to high light intensity4.02E-02
133GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process4.07E-02
134GO:0051302: regulation of cell division4.11E-02
135GO:0009409: response to cold4.26E-02
136GO:0015992: proton transport4.40E-02
137GO:0051260: protein homooligomerization4.40E-02
138GO:0010431: seed maturation4.40E-02
139GO:0003333: amino acid transmembrane transport4.40E-02
140GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process4.50E-02
141GO:0040007: growth4.98E-02
RankGO TermAdjusted P value
1GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
2GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
3GO:0003735: structural constituent of ribosome7.82E-218
4GO:0003729: mRNA binding2.67E-42
5GO:0019843: rRNA binding2.33E-14
6GO:0003746: translation elongation factor activity1.29E-06
7GO:0015288: porin activity1.34E-06
8GO:0004298: threonine-type endopeptidase activity3.70E-06
9GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity9.09E-06
10GO:0008308: voltage-gated anion channel activity8.05E-05
11GO:0008097: 5S rRNA binding1.34E-04
12GO:0003723: RNA binding4.27E-04
13GO:0031177: phosphopantetheine binding4.78E-04
14GO:0008233: peptidase activity5.96E-04
15GO:0000035: acyl binding6.32E-04
16GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity6.78E-04
17GO:1990259: histone-glutamine methyltransferase activity6.78E-04
18GO:0035614: snRNA stem-loop binding6.78E-04
19GO:0000824: inositol tetrakisphosphate 3-kinase activity6.78E-04
20GO:1990189: peptide-serine-N-acetyltransferase activity6.78E-04
21GO:0004828: serine-tRNA ligase activity6.78E-04
22GO:0047326: inositol tetrakisphosphate 5-kinase activity6.78E-04
23GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity6.78E-04
24GO:1990190: peptide-glutamate-N-acetyltransferase activity6.78E-04
25GO:0005080: protein kinase C binding6.78E-04
26GO:0008121: ubiquinol-cytochrome-c reductase activity8.07E-04
27GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.00E-03
28GO:0043022: ribosome binding1.00E-03
29GO:0030619: U1 snRNA binding1.46E-03
30GO:0050291: sphingosine N-acyltransferase activity1.46E-03
31GO:0015173: aromatic amino acid transmembrane transporter activity1.46E-03
32GO:0032934: sterol binding1.46E-03
33GO:0001055: RNA polymerase II activity1.73E-03
34GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.93E-03
35GO:0001054: RNA polymerase I activity2.35E-03
36GO:0044183: protein binding involved in protein folding2.35E-03
37GO:0005457: GDP-fucose transmembrane transporter activity2.41E-03
38GO:0070180: large ribosomal subunit rRNA binding2.41E-03
39GO:0070181: small ribosomal subunit rRNA binding2.41E-03
40GO:0008649: rRNA methyltransferase activity2.41E-03
41GO:0001056: RNA polymerase III activity2.69E-03
42GO:0015266: protein channel activity3.06E-03
43GO:0004550: nucleoside diphosphate kinase activity3.51E-03
44GO:0047627: adenylylsulfatase activity3.51E-03
45GO:0017089: glycolipid transporter activity3.51E-03
46GO:0003999: adenine phosphoribosyltransferase activity3.51E-03
47GO:0022890: inorganic cation transmembrane transporter activity3.51E-03
48GO:0005460: UDP-glucose transmembrane transporter activity3.51E-03
49GO:0010011: auxin binding4.74E-03
50GO:0051861: glycolipid binding4.74E-03
51GO:0070628: proteasome binding4.74E-03
52GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances4.74E-03
53GO:0016004: phospholipase activator activity4.74E-03
54GO:0031386: protein tag6.09E-03
55GO:0005459: UDP-galactose transmembrane transporter activity6.09E-03
56GO:0045547: dehydrodolichyl diphosphate synthase activity6.09E-03
57GO:0005275: amine transmembrane transporter activity6.09E-03
58GO:0031593: polyubiquitin binding7.56E-03
59GO:0051920: peroxiredoxin activity9.15E-03
60GO:0005338: nucleotide-sugar transmembrane transporter activity1.09E-02
61GO:0008235: metalloexopeptidase activity1.09E-02
62GO:0042162: telomeric DNA binding1.09E-02
63GO:0030515: snoRNA binding1.09E-02
64GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.14E-02
65GO:0003743: translation initiation factor activity1.21E-02
66GO:0016209: antioxidant activity1.27E-02
67GO:0008515: sucrose transmembrane transporter activity2.31E-02
68GO:0008794: arsenate reductase (glutaredoxin) activity2.31E-02
69GO:0046961: proton-transporting ATPase activity, rotational mechanism2.31E-02
70GO:0050897: cobalt ion binding2.64E-02
71GO:0003993: acid phosphatase activity3.02E-02
72GO:0051119: sugar transmembrane transporter activity3.29E-02
73GO:0051536: iron-sulfur cluster binding3.83E-02
74GO:0043130: ubiquitin binding3.83E-02
75GO:0005528: FK506 binding3.83E-02
76GO:0005216: ion channel activity4.11E-02
RankGO TermAdjusted P value
1GO:0043186: P granule0.00E+00
2GO:0005675: holo TFIIH complex0.00E+00
3GO:0005840: ribosome1.47E-146
4GO:0022626: cytosolic ribosome6.61E-138
5GO:0022625: cytosolic large ribosomal subunit9.64E-130
6GO:0022627: cytosolic small ribosomal subunit2.64E-96
7GO:0005829: cytosol8.39E-48
8GO:0005730: nucleolus1.77E-43
9GO:0005737: cytoplasm6.63E-42
10GO:0009506: plasmodesma2.33E-29
11GO:0015934: large ribosomal subunit7.48E-24
12GO:0005774: vacuolar membrane1.52E-18
13GO:0016020: membrane1.48E-14
14GO:0015935: small ribosomal subunit1.54E-14
15GO:0005773: vacuole2.24E-13
16GO:0005618: cell wall1.19E-09
17GO:0005742: mitochondrial outer membrane translocase complex3.28E-08
18GO:0000502: proteasome complex4.30E-08
19GO:0009507: chloroplast2.05E-07
20GO:0005853: eukaryotic translation elongation factor 1 complex2.86E-07
21GO:0046930: pore complex2.22E-06
22GO:0005839: proteasome core complex3.70E-06
23GO:0005732: small nucleolar ribonucleoprotein complex3.70E-06
24GO:0005886: plasma membrane4.57E-06
25GO:0019013: viral nucleocapsid1.91E-05
26GO:0005741: mitochondrial outer membrane7.17E-05
27GO:0005665: DNA-directed RNA polymerase II, core complex2.65E-04
28GO:0005758: mitochondrial intermembrane space5.77E-04
29GO:0005681: spliceosomal complex6.66E-04
30GO:0072546: ER membrane protein complex6.78E-04
31GO:0030686: 90S preribosome6.78E-04
32GO:0005736: DNA-directed RNA polymerase I complex1.46E-03
33GO:0035145: exon-exon junction complex1.46E-03
34GO:0005685: U1 snRNP1.46E-03
35GO:0031415: NatA complex1.46E-03
36GO:0005697: telomerase holoenzyme complex1.46E-03
37GO:0005666: DNA-directed RNA polymerase III complex1.73E-03
38GO:0071011: precatalytic spliceosome1.73E-03
39GO:0015030: Cajal body1.73E-03
40GO:0000418: DNA-directed RNA polymerase IV complex2.03E-03
41GO:0008541: proteasome regulatory particle, lid subcomplex2.35E-03
42GO:0071013: catalytic step 2 spliceosome2.35E-03
43GO:0000439: core TFIIH complex2.41E-03
44GO:0034719: SMN-Sm protein complex2.41E-03
45GO:0005750: mitochondrial respiratory chain complex III3.46E-03
46GO:0033180: proton-transporting V-type ATPase, V1 domain3.51E-03
47GO:1990726: Lsm1-7-Pat1 complex3.51E-03
48GO:0000419: DNA-directed RNA polymerase V complex4.33E-03
49GO:0016471: vacuolar proton-transporting V-type ATPase complex4.74E-03
50GO:0005682: U5 snRNP4.74E-03
51GO:0070469: respiratory chain5.32E-03
52GO:0005687: U4 snRNP6.09E-03
53GO:0097526: spliceosomal tri-snRNP complex6.09E-03
54GO:0016282: eukaryotic 43S preinitiation complex7.56E-03
55GO:0031428: box C/D snoRNP complex7.56E-03
56GO:0016272: prefoldin complex9.15E-03
57GO:0005762: mitochondrial large ribosomal subunit9.15E-03
58GO:0033290: eukaryotic 48S preinitiation complex9.15E-03
59GO:0005689: U12-type spliceosomal complex9.15E-03
60GO:0005783: endoplasmic reticulum9.45E-03
61GO:0031359: integral component of chloroplast outer membrane1.09E-02
62GO:0071004: U2-type prespliceosome1.27E-02
63GO:0045273: respiratory chain complex II1.27E-02
64GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)1.27E-02
65GO:0005688: U6 snRNP1.27E-02
66GO:0005743: mitochondrial inner membrane1.34E-02
67GO:0046540: U4/U6 x U5 tri-snRNP complex1.46E-02
68GO:0031901: early endosome membrane1.66E-02
69GO:0030529: intracellular ribonucleoprotein complex1.74E-02
70GO:0005622: intracellular1.76E-02
71GO:0005788: endoplasmic reticulum lumen1.84E-02
72GO:0005740: mitochondrial envelope2.08E-02
73GO:0005686: U2 snRNP2.08E-02
74GO:0005852: eukaryotic translation initiation factor 3 complex2.31E-02
75GO:0048471: perinuclear region of cytoplasm2.31E-02
76GO:0032040: small-subunit processome2.54E-02
77GO:0031307: integral component of mitochondrial outer membrane2.54E-02
78GO:0009508: plastid chromosome2.79E-02
79GO:0005769: early endosome3.56E-02
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Gene type



Gene DE type