Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G52240

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
2GO:0042820: vitamin B6 catabolic process0.00E+00
3GO:0042493: response to drug0.00E+00
4GO:0070125: mitochondrial translational elongation0.00E+00
5GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
6GO:1901918: negative regulation of exoribonuclease activity0.00E+00
7GO:0009715: chalcone biosynthetic process0.00E+00
8GO:0042821: pyridoxal biosynthetic process0.00E+00
9GO:0015882: L-ascorbic acid transport0.00E+00
10GO:0015979: photosynthesis5.15E-09
11GO:0018298: protein-chromophore linkage7.94E-08
12GO:0000256: allantoin catabolic process2.65E-06
13GO:0010136: ureide catabolic process9.64E-06
14GO:0005977: glycogen metabolic process9.64E-06
15GO:0090391: granum assembly9.64E-06
16GO:0006145: purine nucleobase catabolic process2.19E-05
17GO:0006021: inositol biosynthetic process3.99E-05
18GO:0010021: amylopectin biosynthetic process3.99E-05
19GO:0009765: photosynthesis, light harvesting3.99E-05
20GO:0015995: chlorophyll biosynthetic process4.21E-05
21GO:0016123: xanthophyll biosynthetic process6.36E-05
22GO:0009768: photosynthesis, light harvesting in photosystem I7.83E-05
23GO:0046855: inositol phosphate dephosphorylation9.33E-05
24GO:0009645: response to low light intensity stimulus1.69E-04
25GO:0048564: photosystem I assembly2.16E-04
26GO:0031426: polycistronic mRNA processing2.39E-04
27GO:0071277: cellular response to calcium ion2.39E-04
28GO:1904966: positive regulation of vitamin E biosynthetic process2.39E-04
29GO:1904964: positive regulation of phytol biosynthetic process2.39E-04
30GO:0042371: vitamin K biosynthetic process2.39E-04
31GO:0010028: xanthophyll cycle2.39E-04
32GO:0006419: alanyl-tRNA aminoacylation2.39E-04
33GO:0010362: negative regulation of anion channel activity by blue light2.39E-04
34GO:0009443: pyridoxal 5'-phosphate salvage2.39E-04
35GO:0009657: plastid organization2.67E-04
36GO:0000373: Group II intron splicing3.23E-04
37GO:0009658: chloroplast organization3.28E-04
38GO:0009638: phototropism3.83E-04
39GO:0080167: response to karrikin4.87E-04
40GO:0009793: embryo development ending in seed dormancy5.22E-04
41GO:0006435: threonyl-tRNA aminoacylation5.29E-04
42GO:0030187: melatonin biosynthetic process5.29E-04
43GO:0042853: L-alanine catabolic process5.29E-04
44GO:1902326: positive regulation of chlorophyll biosynthetic process5.29E-04
45GO:0009629: response to gravity5.29E-04
46GO:0080005: photosystem stoichiometry adjustment5.29E-04
47GO:0006790: sulfur compound metabolic process5.92E-04
48GO:0055114: oxidation-reduction process6.59E-04
49GO:0006006: glucose metabolic process6.71E-04
50GO:0019253: reductive pentose-phosphate cycle7.56E-04
51GO:0009637: response to blue light7.79E-04
52GO:0046854: phosphatidylinositol phosphorylation8.45E-04
53GO:0009405: pathogenesis8.60E-04
54GO:0006013: mannose metabolic process8.60E-04
55GO:0010114: response to red light1.07E-03
56GO:0009644: response to high light intensity1.17E-03
57GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center1.23E-03
58GO:0046739: transport of virus in multicellular host1.23E-03
59GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.23E-03
60GO:0009067: aspartate family amino acid biosynthetic process1.23E-03
61GO:0006020: inositol metabolic process1.23E-03
62GO:0010239: chloroplast mRNA processing1.23E-03
63GO:0090307: mitotic spindle assembly1.23E-03
64GO:0009052: pentose-phosphate shunt, non-oxidative branch1.23E-03
65GO:0009650: UV protection1.23E-03
66GO:0009902: chloroplast relocation1.64E-03
67GO:0031122: cytoplasmic microtubule organization1.64E-03
68GO:0006096: glycolytic process1.91E-03
69GO:0016558: protein import into peroxisome matrix2.09E-03
70GO:0016120: carotene biosynthetic process2.09E-03
71GO:0009735: response to cytokinin2.26E-03
72GO:0019252: starch biosynthetic process2.34E-03
73GO:0009791: post-embryonic development2.34E-03
74GO:0000741: karyogamy2.57E-03
75GO:0009643: photosynthetic acclimation2.57E-03
76GO:0009416: response to light stimulus2.65E-03
77GO:0010189: vitamin E biosynthetic process3.09E-03
78GO:0009088: threonine biosynthetic process3.09E-03
79GO:0071470: cellular response to osmotic stress3.09E-03
80GO:0006400: tRNA modification3.64E-03
81GO:0009772: photosynthetic electron transport in photosystem II3.64E-03
82GO:1900056: negative regulation of leaf senescence3.64E-03
83GO:0010196: nonphotochemical quenching3.64E-03
84GO:0009769: photosynthesis, light harvesting in photosystem II3.64E-03
85GO:0009704: de-etiolation4.23E-03
86GO:0031540: regulation of anthocyanin biosynthetic process4.23E-03
87GO:0016559: peroxisome fission4.23E-03
88GO:0009642: response to light intensity4.23E-03
89GO:0017004: cytochrome complex assembly4.84E-03
90GO:0007623: circadian rhythm4.85E-03
91GO:0009409: response to cold4.87E-03
92GO:0009451: RNA modification4.99E-03
93GO:0010218: response to far red light5.18E-03
94GO:0090333: regulation of stomatal closure5.48E-03
95GO:0006754: ATP biosynthetic process5.48E-03
96GO:0098656: anion transmembrane transport5.48E-03
97GO:0006098: pentose-phosphate shunt5.48E-03
98GO:0009821: alkaloid biosynthetic process5.48E-03
99GO:0048507: meristem development5.48E-03
100GO:0009853: photorespiration5.96E-03
101GO:0010380: regulation of chlorophyll biosynthetic process6.15E-03
102GO:0009641: shade avoidance6.85E-03
103GO:0006949: syncytium formation6.85E-03
104GO:0006259: DNA metabolic process6.85E-03
105GO:0006415: translational termination7.58E-03
106GO:0018119: peptidyl-cysteine S-nitrosylation7.58E-03
107GO:0009773: photosynthetic electron transport in photosystem I7.58E-03
108GO:0006265: DNA topological change7.58E-03
109GO:0009089: lysine biosynthetic process via diaminopimelate7.58E-03
110GO:0009744: response to sucrose7.68E-03
111GO:0009725: response to hormone9.11E-03
112GO:0006094: gluconeogenesis9.11E-03
113GO:0009767: photosynthetic electron transport chain9.11E-03
114GO:0010223: secondary shoot formation9.92E-03
115GO:0010020: chloroplast fission9.92E-03
116GO:0009585: red, far-red light phototransduction1.04E-02
117GO:0010224: response to UV-B1.07E-02
118GO:0019853: L-ascorbic acid biosynthetic process1.07E-02
119GO:0006863: purine nucleobase transport1.16E-02
120GO:0006833: water transport1.16E-02
121GO:0009863: salicylic acid mediated signaling pathway1.25E-02
122GO:0045893: positive regulation of transcription, DNA-templated1.26E-02
123GO:0009269: response to desiccation1.43E-02
124GO:0055085: transmembrane transport1.47E-02
125GO:0006396: RNA processing1.52E-02
126GO:0080092: regulation of pollen tube growth1.53E-02
127GO:0019748: secondary metabolic process1.53E-02
128GO:0009411: response to UV1.62E-02
129GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.62E-02
130GO:0016117: carotenoid biosynthetic process1.82E-02
131GO:0034220: ion transmembrane transport1.93E-02
132GO:0010118: stomatal movement1.93E-02
133GO:0006606: protein import into nucleus1.93E-02
134GO:0046686: response to cadmium ion1.95E-02
135GO:0009058: biosynthetic process1.96E-02
136GO:0010197: polar nucleus fusion2.03E-02
137GO:0048868: pollen tube development2.03E-02
138GO:0015986: ATP synthesis coupled proton transport2.14E-02
139GO:0007059: chromosome segregation2.14E-02
140GO:0008654: phospholipid biosynthetic process2.25E-02
141GO:0010193: response to ozone2.36E-02
142GO:0006635: fatty acid beta-oxidation2.36E-02
143GO:0016032: viral process2.47E-02
144GO:0009828: plant-type cell wall loosening2.71E-02
145GO:0010468: regulation of gene expression3.06E-02
146GO:0001666: response to hypoxia3.07E-02
147GO:0010027: thylakoid membrane organization3.07E-02
148GO:0010411: xyloglucan metabolic process3.45E-02
149GO:0009817: defense response to fungus, incompatible interaction3.71E-02
150GO:0000160: phosphorelay signal transduction system3.84E-02
151GO:0009813: flavonoid biosynthetic process3.84E-02
152GO:0006811: ion transport3.97E-02
153GO:0007568: aging4.11E-02
154GO:0009910: negative regulation of flower development4.11E-02
155GO:0034599: cellular response to oxidative stress4.53E-02
RankGO TermAdjusted P value
1GO:0010276: phytol kinase activity0.00E+00
2GO:0015229: L-ascorbic acid transporter activity0.00E+00
3GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
4GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
5GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
6GO:0050281: serine-glyoxylate transaminase activity0.00E+00
7GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
8GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
9GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
10GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
11GO:0045435: lycopene epsilon cyclase activity0.00E+00
12GO:0016210: naringenin-chalcone synthase activity0.00E+00
13GO:0004760: serine-pyruvate transaminase activity0.00E+00
14GO:0042623: ATPase activity, coupled0.00E+00
15GO:0016168: chlorophyll binding1.41E-06
16GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity2.65E-06
17GO:0019156: isoamylase activity2.65E-06
18GO:0052832: inositol monophosphate 3-phosphatase activity2.65E-06
19GO:0008934: inositol monophosphate 1-phosphatase activity2.65E-06
20GO:0052833: inositol monophosphate 4-phosphatase activity2.65E-06
21GO:0008453: alanine-glyoxylate transaminase activity3.99E-05
22GO:0031409: pigment binding5.69E-05
23GO:0004556: alpha-amylase activity9.33E-05
24GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.29E-04
25GO:0010347: L-galactose-1-phosphate phosphatase activity2.39E-04
26GO:0035671: enone reductase activity2.39E-04
27GO:0004451: isocitrate lyase activity2.39E-04
28GO:0047958: glycine:2-oxoglutarate aminotransferase activity2.39E-04
29GO:0004813: alanine-tRNA ligase activity2.39E-04
30GO:0004829: threonine-tRNA ligase activity5.29E-04
31GO:0004751: ribose-5-phosphate isomerase activity8.60E-04
32GO:0070402: NADPH binding8.60E-04
33GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor8.60E-04
34GO:0010277: chlorophyllide a oxygenase [overall] activity8.60E-04
35GO:0004848: ureidoglycolate hydrolase activity8.60E-04
36GO:0004148: dihydrolipoyl dehydrogenase activity8.60E-04
37GO:0016851: magnesium chelatase activity1.23E-03
38GO:0016149: translation release factor activity, codon specific1.23E-03
39GO:0009882: blue light photoreceptor activity1.23E-03
40GO:0004072: aspartate kinase activity1.23E-03
41GO:0048027: mRNA 5'-UTR binding1.23E-03
42GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.23E-03
43GO:0022891: substrate-specific transmembrane transporter activity1.48E-03
44GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.64E-03
45GO:0043015: gamma-tubulin binding1.64E-03
46GO:0043495: protein anchor1.64E-03
47GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.09E-03
48GO:0051011: microtubule minus-end binding2.09E-03
49GO:0004462: lactoylglutathione lyase activity2.57E-03
50GO:0004605: phosphatidate cytidylyltransferase activity2.57E-03
51GO:0004332: fructose-bisphosphate aldolase activity2.57E-03
52GO:0000293: ferric-chelate reductase activity2.57E-03
53GO:0004559: alpha-mannosidase activity3.09E-03
54GO:0008195: phosphatidate phosphatase activity3.09E-03
55GO:0015631: tubulin binding3.09E-03
56GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.33E-03
57GO:0016597: amino acid binding3.41E-03
58GO:0019899: enzyme binding3.64E-03
59GO:0004033: aldo-keto reductase (NADP) activity4.23E-03
60GO:0016491: oxidoreductase activity4.61E-03
61GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity4.84E-03
62GO:0008135: translation factor activity, RNA binding4.84E-03
63GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism5.48E-03
64GO:0003747: translation release factor activity5.48E-03
65GO:0003746: translation elongation factor activity5.96E-03
66GO:0016844: strictosidine synthase activity6.15E-03
67GO:0042802: identical protein binding6.58E-03
68GO:0005089: Rho guanyl-nucleotide exchange factor activity7.58E-03
69GO:0051537: 2 iron, 2 sulfur cluster binding8.31E-03
70GO:0000049: tRNA binding8.33E-03
71GO:0008081: phosphoric diester hydrolase activity9.11E-03
72GO:0005315: inorganic phosphate transmembrane transporter activity9.11E-03
73GO:0000155: phosphorelay sensor kinase activity9.11E-03
74GO:0042973: glucan endo-1,3-beta-D-glucosidase activity9.92E-03
75GO:0005345: purine nucleobase transmembrane transporter activity1.34E-02
76GO:0003727: single-stranded RNA binding1.72E-02
77GO:0008514: organic anion transmembrane transporter activity1.72E-02
78GO:0003924: GTPase activity1.82E-02
79GO:0009055: electron carrier activity1.99E-02
80GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.03E-02
81GO:0004519: endonuclease activity2.03E-02
82GO:0008080: N-acetyltransferase activity2.03E-02
83GO:0046872: metal ion binding2.13E-02
84GO:0010181: FMN binding2.14E-02
85GO:0004872: receptor activity2.25E-02
86GO:0016762: xyloglucan:xyloglucosyl transferase activity2.36E-02
87GO:0048038: quinone binding2.36E-02
88GO:0008237: metallopeptidase activity2.83E-02
89GO:0005200: structural constituent of cytoskeleton2.83E-02
90GO:0008483: transaminase activity2.83E-02
91GO:0015250: water channel activity3.07E-02
92GO:0016887: ATPase activity3.16E-02
93GO:0016798: hydrolase activity, acting on glycosyl bonds3.45E-02
94GO:0016788: hydrolase activity, acting on ester bonds4.03E-02
95GO:0050897: cobalt ion binding4.11E-02
96GO:0003993: acid phosphatase activity4.53E-02
97GO:0050661: NADP binding4.81E-02
RankGO TermAdjusted P value
1GO:0010368: chloroplast isoamylase complex0.00E+00
2GO:0009507: chloroplast5.02E-33
3GO:0009535: chloroplast thylakoid membrane8.56E-23
4GO:0009570: chloroplast stroma3.22E-11
5GO:0009534: chloroplast thylakoid3.83E-10
6GO:0009941: chloroplast envelope8.02E-10
7GO:0009579: thylakoid4.75E-09
8GO:0010287: plastoglobule4.83E-06
9GO:0009543: chloroplast thylakoid lumen5.66E-06
10GO:0009523: photosystem II1.23E-05
11GO:0009538: photosystem I reaction center2.16E-04
12GO:0009515: granal stacked thylakoid2.39E-04
13GO:0009782: photosystem I antenna complex2.39E-04
14GO:0010319: stromule3.53E-04
15GO:0031969: chloroplast membrane4.87E-04
16GO:0008274: gamma-tubulin ring complex5.29E-04
17GO:0030095: chloroplast photosystem II7.56E-04
18GO:0030076: light-harvesting complex8.45E-04
19GO:0010007: magnesium chelatase complex8.60E-04
20GO:0031977: thylakoid lumen9.64E-04
21GO:0009654: photosystem II oxygen evolving complex1.14E-03
22GO:0042651: thylakoid membrane1.14E-03
23GO:0000923: equatorial microtubule organizing center1.23E-03
24GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)1.64E-03
25GO:0009517: PSII associated light-harvesting complex II1.64E-03
26GO:0009522: photosystem I2.18E-03
27GO:0019898: extrinsic component of membrane2.34E-03
28GO:0009706: chloroplast inner membrane2.42E-03
29GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.57E-03
30GO:0016020: membrane3.09E-03
31GO:0009295: nucleoid3.21E-03
32GO:0048046: apoplast4.69E-03
33GO:0000922: spindle pole5.48E-03
34GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.48E-03
35GO:0042644: chloroplast nucleoid5.48E-03
36GO:0016324: apical plasma membrane6.85E-03
37GO:0009508: plastid chromosome9.11E-03
38GO:0005777: peroxisome1.26E-02
39GO:0009505: plant-type cell wall1.34E-02
40GO:0005759: mitochondrial matrix2.33E-02
41GO:0005778: peroxisomal membrane2.83E-02
42GO:0009707: chloroplast outer membrane3.71E-02
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Gene type



Gene DE type