co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G52190

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000025: maltose catabolic process	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0005980: glycogen catabolic process	0.00E+00
4	GO:0016553: base conversion or substitution editing	0.00E+00
5	GO:0090627: plant epidermal cell differentiation	0.00E+00
6	GO:0090279: regulation of calcium ion import	0.00E+00
7	GO:0007172: signal complex assembly	0.00E+00
8	GO:0015717: triose phosphate transport	0.00E+00
9	GO:1905177: tracheary element differentiation	0.00E+00
10	GO:0071474: cellular hyperosmotic response	0.00E+00
11	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
12	GO:0002184: cytoplasmic translational termination	0.00E+00
13	GO:0030155: regulation of cell adhesion	0.00E+00
14	GO:0032544: plastid translation	7.32E-08
15	GO:0015979: photosynthesis	1.00E-07
16	GO:0009773: photosynthetic electron transport in photosystem I	3.83E-07
17	GO:0009735: response to cytokinin	2.30E-06
18	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.80E-06
19	GO:0006412: translation	3.65E-06
20	GO:0009409: response to cold	4.07E-06
21	GO:0042254: ribosome biogenesis	5.32E-06
22	GO:0006000: fructose metabolic process	1.02E-05
23	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.31E-05
24	GO:0005983: starch catabolic process	2.81E-05
25	GO:0006094: gluconeogenesis	3.48E-05
26	GO:0010021: amylopectin biosynthetic process	4.19E-05
27	GO:0019464: glycine decarboxylation via glycine cleavage system	4.19E-05
28	GO:0006109: regulation of carbohydrate metabolic process	4.19E-05
29	GO:0009913: epidermal cell differentiation	9.77E-05
30	GO:0043489: RNA stabilization	2.46E-04
31	GO:1902025: nitrate import	2.46E-04
32	GO:0032958: inositol phosphate biosynthetic process	2.46E-04
33	GO:0010480: microsporocyte differentiation	2.46E-04
34	GO:0080093: regulation of photorespiration	2.46E-04
35	GO:0090548: response to nitrate starvation	2.46E-04
36	GO:0031998: regulation of fatty acid beta-oxidation	2.46E-04
37	GO:0010028: xanthophyll cycle	2.46E-04
38	GO:0000023: maltose metabolic process	2.46E-04
39	GO:0006002: fructose 6-phosphate metabolic process	2.78E-04
40	GO:0010027: thylakoid membrane organization	4.34E-04
41	GO:0015995: chlorophyll biosynthetic process	5.35E-04
42	GO:0043085: positive regulation of catalytic activity	5.39E-04
43	GO:0005976: polysaccharide metabolic process	5.44E-04
44	GO:0031648: protein destabilization	5.44E-04
45	GO:0016122: xanthophyll metabolic process	5.44E-04
46	GO:0051262: protein tetramerization	5.44E-04
47	GO:0009817: defense response to fungus, incompatible interaction	6.09E-04
48	GO:0005986: sucrose biosynthetic process	7.00E-04
49	GO:0009266: response to temperature stimulus	7.88E-04
50	GO:0009934: regulation of meristem structural organization	7.88E-04
51	GO:0034599: cellular response to oxidative stress	8.68E-04
52	GO:0006518: peptide metabolic process	8.83E-04
53	GO:0010623: programmed cell death involved in cell development	8.83E-04
54	GO:0035436: triose phosphate transmembrane transport	8.83E-04
55	GO:0016050: vesicle organization	8.83E-04
56	GO:0048281: inflorescence morphogenesis	8.83E-04
57	GO:0010731: protein glutathionylation	1.26E-03
58	GO:0010148: transpiration	1.26E-03
59	GO:0006020: inositol metabolic process	1.26E-03
60	GO:0010017: red or far-red light signaling pathway	1.42E-03
61	GO:0015994: chlorophyll metabolic process	1.68E-03
62	GO:2000122: negative regulation of stomatal complex development	1.68E-03
63	GO:0010600: regulation of auxin biosynthetic process	1.68E-03
64	GO:0006552: leucine catabolic process	1.68E-03
65	GO:0006546: glycine catabolic process	1.68E-03
66	GO:0010508: positive regulation of autophagy	1.68E-03
67	GO:0015713: phosphoglycerate transport	1.68E-03
68	GO:0010037: response to carbon dioxide	1.68E-03
69	GO:0006808: regulation of nitrogen utilization	1.68E-03
70	GO:0015976: carbon utilization	1.68E-03
71	GO:0010023: proanthocyanidin biosynthetic process	1.68E-03
72	GO:0051322: anaphase	1.68E-03
73	GO:0009765: photosynthesis, light harvesting	1.68E-03
74	GO:0009658: chloroplast organization	1.82E-03
75	GO:0006662: glycerol ether metabolic process	2.12E-03
76	GO:0006544: glycine metabolic process	2.15E-03
77	GO:0048497: maintenance of floral organ identity	2.15E-03
78	GO:0006097: glyoxylate cycle	2.15E-03
79	GO:0006461: protein complex assembly	2.15E-03
80	GO:0046686: response to cadmium ion	2.22E-03
81	GO:0048825: cotyledon development	2.44E-03
82	GO:0019252: starch biosynthetic process	2.44E-03
83	GO:0009643: photosynthetic acclimation	2.65E-03
84	GO:0006563: L-serine metabolic process	2.65E-03
85	GO:0042549: photosystem II stabilization	2.65E-03
86	GO:0000470: maturation of LSU-rRNA	2.65E-03
87	GO:0042742: defense response to bacterium	2.91E-03
88	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.18E-03
89	GO:1901259: chloroplast rRNA processing	3.18E-03
90	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	3.18E-03
91	GO:0009955: adaxial/abaxial pattern specification	3.18E-03
92	GO:0045454: cell redox homeostasis	3.32E-03
93	GO:0055114: oxidation-reduction process	3.47E-03
94	GO:0048437: floral organ development	3.75E-03
95	GO:0070370: cellular heat acclimation	3.75E-03
96	GO:0009645: response to low light intensity stimulus	3.75E-03
97	GO:0022904: respiratory electron transport chain	3.75E-03
98	GO:0010103: stomatal complex morphogenesis	3.75E-03
99	GO:0010161: red light signaling pathway	3.75E-03
100	GO:0010928: regulation of auxin mediated signaling pathway	4.35E-03
101	GO:0005978: glycogen biosynthetic process	4.35E-03
102	GO:0006353: DNA-templated transcription, termination	4.35E-03
103	GO:0009704: de-etiolation	4.35E-03
104	GO:0001558: regulation of cell growth	4.98E-03
105	GO:0009657: plastid organization	4.98E-03
106	GO:0007623: circadian rhythm	5.12E-03
107	GO:0051865: protein autoubiquitination	5.65E-03
108	GO:0006783: heme biosynthetic process	5.65E-03
109	GO:0035999: tetrahydrofolate interconversion	6.33E-03
110	GO:0042761: very long-chain fatty acid biosynthetic process	6.33E-03
111	GO:0005982: starch metabolic process	6.33E-03
112	GO:0006782: protoporphyrinogen IX biosynthetic process	7.06E-03
113	GO:0048829: root cap development	7.06E-03
114	GO:0006415: translational termination	7.80E-03
115	GO:0009750: response to fructose	7.80E-03
116	GO:0048229: gametophyte development	7.80E-03
117	GO:0010015: root morphogenesis	7.80E-03
118	GO:0010582: floral meristem determinacy	8.58E-03
119	GO:0009644: response to high light intensity	8.67E-03
120	GO:0010102: lateral root morphogenesis	9.38E-03
121	GO:0006108: malate metabolic process	9.38E-03
122	GO:0006006: glucose metabolic process	9.38E-03
123	GO:0009718: anthocyanin-containing compound biosynthetic process	9.38E-03
124	GO:0010075: regulation of meristem growth	9.38E-03
125	GO:0010143: cutin biosynthetic process	1.02E-02
126	GO:0010207: photosystem II assembly	1.02E-02
127	GO:0019253: reductive pentose-phosphate cycle	1.02E-02
128	GO:0005985: sucrose metabolic process	1.11E-02
129	GO:0010025: wax biosynthetic process	1.20E-02
130	GO:0043086: negative regulation of catalytic activity	1.28E-02
131	GO:0009944: polarity specification of adaxial/abaxial axis	1.29E-02
132	GO:0000027: ribosomal large subunit assembly	1.29E-02
133	GO:0006289: nucleotide-excision repair	1.29E-02
134	GO:0007017: microtubule-based process	1.38E-02
135	GO:0009768: photosynthesis, light harvesting in photosystem I	1.38E-02
136	GO:0051302: regulation of cell division	1.38E-02
137	GO:0061077: chaperone-mediated protein folding	1.47E-02
138	GO:0003333: amino acid transmembrane transport	1.47E-02
139	GO:0019915: lipid storage	1.47E-02
140	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.57E-02
141	GO:0035428: hexose transmembrane transport	1.57E-02
142	GO:0030245: cellulose catabolic process	1.57E-02
143	GO:0009686: gibberellin biosynthetic process	1.67E-02
144	GO:0001944: vasculature development	1.67E-02
145	GO:0010089: xylem development	1.77E-02
146	GO:0006810: transport	1.90E-02
147	GO:0042335: cuticle development	1.99E-02
148	GO:0000413: protein peptidyl-prolyl isomerization	1.99E-02
149	GO:0010051: xylem and phloem pattern formation	1.99E-02
150	GO:0048653: anther development	1.99E-02
151	GO:0005975: carbohydrate metabolic process	2.01E-02
152	GO:0046323: glucose import	2.09E-02
153	GO:0009845: seed germination	2.10E-02
154	GO:0009646: response to absence of light	2.21E-02
155	GO:0009790: embryo development	2.26E-02
156	GO:0006633: fatty acid biosynthetic process	2.43E-02
157	GO:0000302: response to reactive oxygen species	2.43E-02
158	GO:0071281: cellular response to iron ion	2.67E-02
159	GO:1901657: glycosyl compound metabolic process	2.67E-02
160	GO:0009414: response to water deprivation	3.02E-02
161	GO:0000910: cytokinesis	3.04E-02
162	GO:0009911: positive regulation of flower development	3.16E-02
163	GO:0009607: response to biotic stimulus	3.29E-02
164	GO:0009627: systemic acquired resistance	3.42E-02
165	GO:0030154: cell differentiation	3.54E-02
166	GO:0016311: dephosphorylation	3.69E-02
167	GO:0018298: protein-chromophore linkage	3.82E-02
168	GO:0000160: phosphorelay signal transduction system	3.96E-02
169	GO:0010218: response to far red light	4.10E-02
170	GO:0010119: regulation of stomatal movement	4.24E-02
171	GO:0009631: cold acclimation	4.24E-02
172	GO:0006865: amino acid transport	4.38E-02
173	GO:0006970: response to osmotic stress	4.44E-02
174	GO:0045087: innate immune response	4.52E-02
175	GO:0009637: response to blue light	4.52E-02
176	GO:0009853: photorespiration	4.52E-02
177	GO:0006099: tricarboxylic acid cycle	4.66E-02
178	GO:0009723: response to ethylene	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
3	GO:0004134: 4-alpha-glucanotransferase activity	0.00E+00
4	GO:0004645: phosphorylase activity	0.00E+00
5	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
6	GO:0017046: peptide hormone binding	0.00E+00
7	GO:0048039: ubiquinone binding	0.00E+00
8	GO:0009899: ent-kaurene synthase activity	0.00E+00
9	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
10	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
11	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
12	GO:0008184: glycogen phosphorylase activity	0.00E+00
13	GO:0019843: rRNA binding	7.86E-13
14	GO:0003735: structural constituent of ribosome	7.44E-08
15	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.80E-06
16	GO:0042277: peptide binding	4.19E-05
17	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.19E-05
18	GO:0000828: inositol hexakisphosphate kinase activity	2.46E-04
19	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.46E-04
20	GO:0004853: uroporphyrinogen decarboxylase activity	2.46E-04
21	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	2.46E-04
22	GO:0000829: inositol heptakisphosphate kinase activity	2.46E-04
23	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.46E-04
24	GO:0005227: calcium activated cation channel activity	2.46E-04
25	GO:0048038: quinone binding	2.66E-04
26	GO:0008047: enzyme activator activity	4.67E-04
27	GO:0018708: thiol S-methyltransferase activity	5.44E-04
28	GO:0003844: 1,4-alpha-glucan branching enzyme activity	5.44E-04
29	GO:0050736: O-malonyltransferase activity	5.44E-04
30	GO:0008967: phosphoglycolate phosphatase activity	5.44E-04
31	GO:0016868: intramolecular transferase activity, phosphotransferases	5.44E-04
32	GO:0010297: heteropolysaccharide binding	5.44E-04
33	GO:0033201: alpha-1,4-glucan synthase activity	5.44E-04
34	GO:0008266: poly(U) RNA binding	7.88E-04
35	GO:0043169: cation binding	8.83E-04
36	GO:0004373: glycogen (starch) synthase activity	8.83E-04
37	GO:0017150: tRNA dihydrouridine synthase activity	8.83E-04
38	GO:0050734: hydroxycinnamoyltransferase activity	8.83E-04
39	GO:0045174: glutathione dehydrogenase (ascorbate) activity	8.83E-04
40	GO:0071917: triose-phosphate transmembrane transporter activity	8.83E-04
41	GO:0004857: enzyme inhibitor activity	1.08E-03
42	GO:0016149: translation release factor activity, codon specific	1.26E-03
43	GO:0016851: magnesium chelatase activity	1.26E-03
44	GO:0043023: ribosomal large subunit binding	1.26E-03
45	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.26E-03
46	GO:0033612: receptor serine/threonine kinase binding	1.30E-03
47	GO:0010328: auxin influx transmembrane transporter activity	1.68E-03
48	GO:0009011: starch synthase activity	1.68E-03
49	GO:0019199: transmembrane receptor protein kinase activity	1.68E-03
50	GO:0015120: phosphoglycerate transmembrane transporter activity	1.68E-03
51	GO:0047134: protein-disulfide reductase activity	1.82E-03
52	GO:0004372: glycine hydroxymethyltransferase activity	2.15E-03
53	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	2.15E-03
54	GO:0004791: thioredoxin-disulfide reductase activity	2.27E-03
55	GO:0004130: cytochrome-c peroxidase activity	2.65E-03
56	GO:0016615: malate dehydrogenase activity	2.65E-03
57	GO:2001070: starch binding	2.65E-03
58	GO:0015035: protein disulfide oxidoreductase activity	2.65E-03
59	GO:0004332: fructose-bisphosphate aldolase activity	2.65E-03
60	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.97E-03
61	GO:0030060: L-malate dehydrogenase activity	3.18E-03
62	GO:0005261: cation channel activity	3.18E-03
63	GO:0004602: glutathione peroxidase activity	3.18E-03
64	GO:0051920: peroxiredoxin activity	3.18E-03
65	GO:0030170: pyridoxal phosphate binding	3.88E-03
66	GO:0005337: nucleoside transmembrane transporter activity	4.35E-03
67	GO:0016209: antioxidant activity	4.35E-03
68	GO:0009055: electron carrier activity	5.08E-03
69	GO:0003747: translation release factor activity	5.65E-03
70	GO:0044183: protein binding involved in protein folding	7.80E-03
71	GO:0047372: acylglycerol lipase activity	7.80E-03
72	GO:0043621: protein self-association	8.67E-03
73	GO:0051537: 2 iron, 2 sulfur cluster binding	8.67E-03
74	GO:0004565: beta-galactosidase activity	9.38E-03
75	GO:0004022: alcohol dehydrogenase (NAD) activity	9.38E-03
76	GO:0004089: carbonate dehydratase activity	9.38E-03
77	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.20E-02
78	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.20E-02
79	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.20E-02
80	GO:0031409: pigment binding	1.20E-02
81	GO:0030570: pectate lyase activity	1.67E-02
82	GO:0008810: cellulase activity	1.67E-02
83	GO:0022891: substrate-specific transmembrane transporter activity	1.67E-02
84	GO:0001085: RNA polymerase II transcription factor binding	2.09E-02
85	GO:0005355: glucose transmembrane transporter activity	2.21E-02
86	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.21E-02
87	GO:0000156: phosphorelay response regulator activity	2.67E-02
88	GO:0008289: lipid binding	2.91E-02
89	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.91E-02
90	GO:0005200: structural constituent of cytoskeleton	2.91E-02
91	GO:0016168: chlorophyll binding	3.29E-02
92	GO:0102483: scopolin beta-glucosidase activity	3.55E-02
93	GO:0008168: methyltransferase activity	3.98E-02
94	GO:0004222: metalloendopeptidase activity	4.10E-02
95	GO:0004601: peroxidase activity	4.13E-02
96	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.24E-02
97	GO:0016491: oxidoreductase activity	4.64E-02
98	GO:0008422: beta-glucosidase activity	4.81E-02
99	GO:0051539: 4 iron, 4 sulfur cluster binding	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0042579: microbody	0.00E+00
3	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
4	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
5	GO:0009507: chloroplast	4.71E-33
6	GO:0009570: chloroplast stroma	1.01E-28
7	GO:0009941: chloroplast envelope	1.38E-27
8	GO:0009534: chloroplast thylakoid	7.35E-23
9	GO:0009535: chloroplast thylakoid membrane	1.53E-22
10	GO:0009579: thylakoid	1.33E-13
11	GO:0005840: ribosome	1.45E-08
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.17E-07
13	GO:0010319: stromule	9.84E-07
14	GO:0009501: amyloplast	4.81E-06
15	GO:0009543: chloroplast thylakoid lumen	6.39E-06
16	GO:0031977: thylakoid lumen	8.01E-06
17	GO:0009295: nucleoid	2.62E-05
18	GO:0009508: plastid chromosome	3.48E-05
19	GO:0030095: chloroplast photosystem II	4.25E-05
20	GO:0016020: membrane	9.20E-05
21	GO:0009538: photosystem I reaction center	2.25E-04
22	GO:0030093: chloroplast photosystem I	5.44E-04
23	GO:0048046: apoplast	6.69E-04
24	GO:0010007: magnesium chelatase complex	8.83E-04
25	GO:0005960: glycine cleavage complex	1.26E-03
26	GO:0009523: photosystem II	2.44E-03
27	GO:0009706: chloroplast inner membrane	2.56E-03
28	GO:0010287: plastoglobule	3.17E-03
29	GO:0009533: chloroplast stromal thylakoid	3.75E-03
30	GO:0031305: integral component of mitochondrial inner membrane	4.35E-03
31	GO:0009536: plastid	4.36E-03
32	GO:0042644: chloroplast nucleoid	5.65E-03
33	GO:0045298: tubulin complex	5.65E-03
34	GO:0005763: mitochondrial small ribosomal subunit	5.65E-03
35	GO:0005740: mitochondrial envelope	7.06E-03
36	GO:0009574: preprophase band	9.38E-03
37	GO:0030076: light-harvesting complex	1.11E-02
38	GO:0022625: cytosolic large ribosomal subunit	1.25E-02
39	GO:0042651: thylakoid membrane	1.38E-02
40	GO:0009654: photosystem II oxygen evolving complex	1.38E-02
41	GO:0015935: small ribosomal subunit	1.47E-02
42	GO:0009522: photosystem I	2.21E-02
43	GO:0019898: extrinsic component of membrane	2.32E-02
44	GO:0030529: intracellular ribonucleoprotein complex	3.16E-02
45	GO:0005667: transcription factor complex	3.42E-02
46	GO:0022626: cytosolic ribosome	3.72E-02
47	GO:0000325: plant-type vacuole	4.24E-02
48	GO:0015934: large ribosomal subunit	4.24E-02
49	GO:0005874: microtubule	4.93E-02